Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                    <                                                                                                    -                                                                                                   --                                                                                                  ---                            <----------DOF2                                                       <--                          <---------At4g35610                                                    <---                     <------ZmHOX2a(2)                                                           ----                    <-----------ARR10                           <---------DEAR3(2)              <----             --------->ARR14(2)                              ------>NtERF2                      <----             <---------ARR14(2)                          <---------DEAR3(1)                     <----            --------->GLK1(1)                          --------->ARR14(2)                       -----      ======================HOX2a_HOX2a               --------->ARR14(2)                        <----      ------>ZmHOX2a(1)   --------->At4g35610         <---------GLK1(2)                        ------      =======================HOX2a_HOX2a              <---------ARR14(2)                     --------     --------->TOE2(3)------>ZmHOX2a(2)        ---------->DOF2<------NtERF2                  --------  --------->ARR14(2)--------->ARR11(3)      --------->ANAC58<---------DEAR3(1)             --------->MYB52(2)  <---------ARR14(2)<---------ARR11(3)      --------->ANAC58--------->DEAR3(1)    --------->CCA1(2)<-   tgtgtttcctcaacatatccacgatctcagctttagaatgagcgtcaagaaaagccgattcggcgtcgtttccatcaacttgagatttgaagttagtgac  8982600             <---------ARR14(2)             <---------GLK1(2)          <------NtERF2         <---------LBD16         <------NtERF2         --------->LBD16         --------->At4g35610         <---------At4g35610        <---------ATERF1(1)        --------->DEAR3(1)       <---------DEAR3(1)       --------->ATERF1(1)      <------NtERF2      <---------DREB2C(1)      --------->ATERF1(1)      <---------ATERF1(1)      --------->DREB2C(1)      ------>NtERF2     <---------ATERF1(1)     --------->DEAR3(1)    <---------RAP2.6(2)    <------NtERF2    --------->ATERF1(1)   <---------ATERF1(1)  --------->DEAR3(1) --------->ATERF1(1) <------NtERF2 ---------ATERF1(1) -----------HVH21                             --------->HSFB2a(1) ----->NtERF2--------->ARR14(2)               <---------HSFC1(2) ------->DEAR3(1)                             <---------At4g35610 ------>ATERF1(1)                             --------->HSFC1(2) ----NtERF2--------->LBD16                    <---------ZAT2 ------RAP2.3(1)                 <---------SPL7 -->NtERF2--------->ANAC58      <---------ANAC58 -----DEAR3(1)                  <---------ANAC46 -----RAP2.6(2)      --------->MYB52(1)       --------->At4g35610 -----RAP2.3(3)     ------>ZmHOX2a(1)         --------->ZAT2                                        < ---->bZIP60(1)<---------HSFB2a(1)           ------->TEIL                                          <- -----bZIP60(1)--------->HSFB2a(1)        --------->ANAC58                                     ------ --->RAP2.6(3)--------->ARR14(2)----------->GT1<---------GLK1(2)                              ------- --->HVH21--------->ANAC58      <---------ANAC58    <<<<<<<<<TBF1<---------------AtSPL8       <------ --->TGA1------>NtERF2 --------->ANAC46   --------->ANAC58      ---------->DOF2           <---------ANAC58 --------DEAR3(1)   ----------->HVH21     --------->ANAC46------>ZmHOX2a(1)               <---------ANAC58   ggcgtcgcggccgcggaatctcctcacggcgatgtcgtaagaagacgcagcttcttcttcctcgttgaaagtaccgagccaaactcgctgatgcttctcg  8982700                                                                    ----------->HVH21                                                                  <---------ANAC55(1)                                                                  --------->O2                                                                  <---------ANAC46                                                                  --------->ANAC55(2)                                                                  <---------O2<---------HSFB2a(2)                                                                  --------->bZIP60(1)                                                                  <---------ANAC58                                                                  --------->TGA1a      --------->GLK1(1)                                           <---------ANAC55(2)      --------->At4g35610                                         <---------ANAC58      --------->ZAT2                                              <---------TGA1a      <---------At4g35610                                    --------->HSFB2a(1)      <---------ZAT2                                         <---------HSFC1(2)        <---------MYB52(1) ---------ARR14(2)                       ===================================bZIP_DOF<------NtERF2 --------CCA1(2)     <<<<<<<<<MYB98  --------->ANAC58        --------->HSFC1(2)    ------>NtERF2 ----->GT1  <---------ALFIN1         --------->ANAC58        <---------HSFB2a(1)  <---------DEAR3(1) -->HSFB2a(2)        <---------MYB52(1)  <----------DOF2     --------->At4g35610  --------->ANAC46 ---HSFB2a(2)       <-------GAMYB  <---------ALFIN1          <---------At4g35610  --------->DEAR3(1)   taaatctgagctccccatcttccgttaggctgaggcacaacgcctttatatttcgacgaaggaagcttacgtgactcggtctcgacgccgttctctgaat  8982800                                                         <------NtERF2                                                        --------->LBD16                                                       <---------ANAC46                                                       <---------DEAR3(1)                                                      --------->ATERF1(1)                                                     ------>NtERF2                                                     <---------ORA47(2)                                                     --------->LBD16                                                     <---------ATERF1(1)                                                     <---------ERF1                                                    <---------RAP2.3(2)                                                    --------->ATERF1(2)                                                    --------->DEAR3(1)                                                    <---------ATERF1(2)                                                    <---------DEAR3(1)                                                   <---------LBD16                                                   <------NtERF2                                                   --------->ATERF1(1)                                                   --------->RAP2.3(1)                                                  <---------RAP2.3(1)                                                  ------>NtERF2                                                  <---------ATERF1(1)                                                 <---------DEAR3(1)                   <---------At4g35610           --------->DEAR3(1)                   ------>NtERF2                --------->ATERF1(1)                   --------->At4g35610         <-----------HVH21                   <---------ATERF1(1)         <---------ATERF1(1)                  --------->DEAR3(1)          --------->bZIP60(2)                  --------->RAP2.3(2)         --------->TGA1a                 --------->RAP2.3(1)          <---------TGA1a                               <--------                ------>NtERF2                 <---------O2                                <------NtERF2                <---------At4g35610           --------->ANAC46                          <---------DEAR3(1)                --------->LBD16               --------->O2                              --------->ETT(1)               --------->ANAC46               --------->bZIP60(1)                       <---------RAP2.6(2)          --------->ZAT2                      =============================================MYC_MYB          --------->At4g35610                 <---------DEAR3(1)                   <-------GAMYB          <---------At4g35610            ------->TEIL<---------RAP2.3(1)         <------NtERF2       <---------At4g35610            --------->ANAC58<---------LBD16          <---------DEAR3(1)      <---------DEAR3(1)              --------->ANAC58<------NtERF2 <-----------ARR10  --------->RAP2.6(3)   ccaaaacgacgctgcttccgccgcttcccattctgtagagacgcatcgacgtcgccggcggagaagagagtttcttctccgtcgtcgttgtcggctttgg  8982900                                                <---------ZAT2                                                <---------At4g35610                                                --------->ZAT2                                                --------->At4g35610                                            <---------ALFIN1                        <---------bZIP60(2) --------->ANAC46                       <---------TOE2(3)   <---------REM1(2)                     ----------->HVH21     <---------ZAT14                     ----------->TGA1      --------->ZAT14          <---------YAB1               >>>>                  --------->GLK1(2)   <---------ANAC46              <---------ANAC46      ---------->DOF2                 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <-----------RAV1(1) ------------------ --DOF2          <---------GLK1(2) <-----------RAV1(1)      --------->ARR14(2) <---------------------WRI1   agtagtagagatggagagagattctgacgttgtactactgtcgtctacacagctgtattccatatttgttgtgtttgtgagagagaaacaaaaaaagaag  8983000                                                              --------->ANAC58                      --------------->AGL15                   --------->ANAC58                      <---------------AGL15                   --------->ANAC46                      <---------DAG2                <---------AHL20(2)                      <----------DOF2               <-----------TBP                     <---------ANAC58           --------->AHL20(2)         <-------TEIL                     <---------ANAC58           <-----------TBP        <---------------AtSPL8 --------->CCA1(2)---------->ID1  --------->ALFIN1  --------->AHL20(2)<---------AtLEC2 >>>>>TBF1<---------TOE2(3) *TSS--------->CCA1(2) <-----------TBP    <-------TEIL      <---------AHL20(2) ------>ANAC81  <-----------RAV1(1)    --------->ALFIN1   --------->ANAC46 ------->TEIL<---------YAB1   aagaaatgggttaagtttttgttgctttatgaagagatggggtttggagtttatatatatacacaaggaagtgcatgtacgttgttgatattatttgttt  8983100                                                                                  <---------AHL20(2)                                                                         ----------->GT1                  <------ZmHOX2a(1)                                     --------->DAG2  ---------->DOF2                 ----------->GT1                                      ---------->DOF2  --------->AHL20(2)           --------->AHL20(2)                                   <---------YAB1    --------->AHL20(1)         <------------CBF         ----------->GT1    ------->TEIL ---------->DOF2 --------->AHL20(2)       --------->ICU4--------->YAB1        --------->ALFIN1  --------->ICU4----------->GT1    -------   tgttttgtcaaaattgaataggataataagagataaatgtaaaatgtgggtaatgtatgtgtatttatgaaagaaaggtgaaaataaaataaaagagaaa  8983200                                                                            --------->HSFB2a(1)                                                                            <---------HSFB2a(1)                                                                            <---------HSFC1(2)                                                                     <---------LBD16                                   --------->MYB46(3)               <---------ANAC58                                   <---------MYB52(2)               <---------ANAC58              <------ZmHOX2a(1)  --------------->AGL15              <---------ANAC46        <---------ZAT14          ----------->RAV1(1)            --------->HSFC1(2)        <-------TEIL  --------->WRKY18(1)                       --------->HSFB2a(1)        --------->ZAT14          <---------------AGL15          <---------HSFC1(2)       --------->ALFIN1         <-----------------AGL1          <---------HSFB2a(1)    --------->ALFIN1 <-----------HVH21  ----------->GT1      <------ZmHOX2a(1)              --------- --->DOF2  <---------At4g35610--------->AtLEC2        <---------ANAC46      --------->HSFC1(2)     <-   ggagaagaggtgcagaggagtagggtcaagtcttgcaacaaatggcaaaatgtgttttgtagaggaagtttcgtgggaagagtccaaaaatatgtgtgct  8983300                                                                                       --------->ATHB51                                                                                       <--------HAHB4                                                                                       <---------ICU4                                   <---------------AGL15                              --------->ICU4                                   --------------->AGL15                              <---------YAB1                                   --------->ICU4                                   --------------->AGL15                                  ==================================================================MADS_MADS                                  ===================================================================MADS_MADS                                  ----------------->AGL3                           <-----------------AGL3                                  ----------------->AGL2                           ==================                             <-------TEIL           --------->ATHB12               ----------------->AGL2                             --------------->AtSPL3<---------YAB1                  <-----------------AGL2                        <-----------GT1         <----------DOF2                    ----------------->AGL3                     <---------AHL20(2)        <---------DAG2          --------->ARR11(3) <---------ICU4                     <---------ICU4==================================================================                --------->AHL20(2)<-----------------AGL3              --------->YAB1<---------------AGL15      --------->DAG2--------->AHL20(2)   --------------->AtSPL8    --------->YAB1  ----------------->AGL1     ---------->DOF2<---------AHL20(2)   --------->MYB59     <----------DOF2  <---------MYB46(3) ---- >ZAT18         <---------AHL20(1)<-----------------AGL1     ------>ZmHOX2a(1)<---------REM1(1) <---- --------ZAT6   <---------AHL20(2)<-----------------AGL2  ---------->ID1      <-----------RAV1(1)<---   agtgtcataaagttttattttatttattacattcgtactaattttggtaccttttgattagtcctttttttataatcttgttgttgccataattagtccc  8983400                           <---------ANAC46                           <---------ANAC58                           <---------ANAC58                           <---------ANAC55(1)                     --------->AHL20(1)                     --------->ARR11(3)                     <---------AHL20(2)                     <---------ARR11(3)                     --------->AHL20(2)         <---------AHL20(2)               --------->YAB1         <---------ANAC46          --------->AHL20(2)          <---------ANAC58    ----------->GT1  <---------AHL20(1)      --------->YAB1 ============MADS_MADS     <---------ANAC55(2)  <---------AHL20(1) ============MADS_MADS     --------->ANAC55(2)  --------->AHL20(2) ----------->AGL15--------->YAB1   --------->TOE2(2)                                       <---------TOE2(3) -------------AGL3--------->AHL20(2)  <---------ANAC58                           ------->TEIL     --- ------------AGL15<---------AHL20(2) <-------TEIL                    --------->TOE2(3) --------->TOE2(3)   ttcatatggtaataaactaataatatattacgtgtaacatgcgtctataaaaaatttacagagaacgtgaacatcaatagatgaatttttcttaatgttt  8983500  Previous    Next  AGI:  At1g25560.1    Description:  AP2 domain-containing transcription factor, putative. Identical to RAV1-like ethylene-responsive transcription factor At1g25560 [Arabidopsis Thaliana] (GB:Q9C6M5); similar to RAV2 (REGULATOR OF THE ATPASE OF THE VACUOLAR MEMBRANE), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G68840.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68564.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain DNA-binding, integrase-type; (InterPro:IPR016177); contains InterPro domain Pathogenesis-related transcriptional factor and ERF, DNA-binding; (InterPro:IPR001471) Range:  from: 8981664    to: 8983028    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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