Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        --------->ARR11(3)                                            --------->REM1(1)         <-------GAMYB   <---------AHL20(1)                                  ---------->ID1  <---------ANAC58   <-----------RAV1(1)                              <----------DOF2     <---------ANAC46   <---------MYB46(3)                           <---------ARR11(3)     <---------ANAC58------------>MYB.PH3(2)         <--                       <---------ANAC58    <-------TEIL <----------DOF2               <---------ARR11(3)                       <---------ANAC58 <---------STY1(2)      ------>ZmHOX2a(2)      --------->AHL20(1)   --------->GLK1(2)--------->TOE1(2)   --------->STY1(2)  <---------YAB1 <---------AtLEC2    <------ >WOX13(1)       ---------->DOF2<-----------RAV1(1) <---------CCA1(2)--------->MYB52(2)     ---------   gatagaatccaaagtatatgaaagtgcgagttctttgtcgctagctacatttgcgtctcttttgatcgagtttgttgcaaggctccaaaatattgttaac  8950800                                                               --------->DAG2                      --                                                              ---------->DOF2                      --                                                       --------->CCA1(2)                           <-                                                      --------->ARR14(2)                           <-       <-----------ARR10                              <---------ARR14(2)                       <-----      <------ZmHOX2a(1)                            --------->ANAC58                          -------- -------ANAC55(2)                                  --------->ANAC58                       --------->At4g35610 ---DOF5.7(2)                 ---------->DOF2      <---------ANAC55(2)                    <---------At4g35610 >DOF5.7(2)       ---------->DOF2                 <---------LBD16               <xxxxxxxxxxxxxxxxsmallRNA(i)   gcgtatgaggaactaagcactaaagccgatttcaaagaacaagttagcgagacacggatatagaaaaagctggactctggaccagactcagtagctgctt  8950900                                                <----------DOF2                                               <---------ANAC58         --------->CCA1(2)                     <---------ANAC58    --------->LBD16                       <---------ICU4   <-----------RAV1(2)                    --------->ATHB51 ------->At4g35610                        --------->ATHB12 ------->ZAT2                         <-------TEIL                                    <---------DAG2 --------ZAT2                        <-----------GT1                                  <----------DOF2 --------At4g35610               --------->AHL20(2)             <---------ANAC46<---------ICU4 ------HVH21                     <---------AHL20(2)        <---------At4g35610 ------>ZmHOX2a(1) ->At4g35610              ----------->GT1<---------YAB1    --------->At4g35610<---------MYB59   cagctccagggatatagttgattttgtatagaaaattatatacattattgctttgtttgtttgctgtcttgaaataagttcctaattcctttttgttttg  8951000                                                                                    <---------AHL20(2)                                                                                    --------->AHL20(2)                                                                            ---------->DOF2                                                                       <---------AHL20(2)                                                                       --------->AHL20(2)           -              <-----------------AG                                 --------->AHL20(2)        --------    ---------->DOF2                    <----------DOF2             <---------AHL20(2)    --------->ATHB12   ttttggcaaagtcataaactcaattggaaagttttgtttttctttcattgtatcaattgaatcaactgtttaattttttaaagcaaaaaattgattaaag  8951100               ------>ZmHOX2a(1)              --------->TOE2(2)                                         --------->YAB1              --------->TOE1(2)                             <---------ARR11(3)              --------->TOE2(3)                             --------->ARR11(3)             --------->YAB1                                <---------CCA1(2)       ----------->GT1           --------->ARR14(2)                           <---------AHL20(2) <---------AHL20(2)  --------->YAB1                                       --------->AHL20(2)  <---------ICU4  --------->AHL20(2) ---------->RAV1(1)---------->DOF2            <----------DOF2  <----------DOF2   ------>ZmHOX2a(1) -->DOF2------------>CBF          ------------>CBF<-----------TGA1   <----------DOF2     *TSS   cccaacataacccaatcctaagaaagcccaaaatggcccaattagacactttcgtcattttatatctttccctttaataaatccttcgtaaaaaaaaatc  8951200                                                              --------->At4g35610                                                             <---------ARR14(2)      ----------->RAV1(2)                                                             --------->GLK1(2)      ------>NtERF2                                                             --------->ARR14(2)    --------->DEAR3(1)                                                        ------>ZmHOX2a(1)          --------->ANAC58                                                        --------->HSFB2a(2)        --------->ANAC58                                                        <---------HSFB2a(2)      ------>NtERF2 <-----                                                        --------->LBD16          <---------ATERF1(1)                                                       --------->TOE1(2)        --------->ANAC46                                            <----------DOF2 <---------GLK1(1)   --------->DEAR3(1)               <-----------GT1             <---------DAG2--------->LBD16<---------ARR14(2)     <-----            <---------YAB1              <-----------GT1<---------LBD16  --------->ARR14(2)    <------           <---------AHL20(1)      <----------DOF2    <---------ZAT2    <-----------ARR10   ------>ZmHOX2a(2)           <---------AHL20(2)    ------>ZmHOX2a(1)    --------->ZAT2    --------->ARR11(3)<---------ARR14(2)         <---------YAB1     --------->GLK1(1)         ----------->RAV1(2)       ----------->HVH21         <---------AHL20(2) <---------ARR14(2)  <-----------GT1         <---------ARR11(3)--------->ARR14(2)   aaacgcagaatattatttttctcgctcgcgaattcctctttctcaccttttctcgctcctgggaatctgaagcagttcttctccgacgcctggatcggta  8951300                                  ------>ZmHOX2a(2)                                 <------ZmHOX2a(2)                                <---------AGP1                                                 ------                                <-----------ARR10                                              ------   --------->GLK1(1)            <---------ARR11(3)                                             ------   <---------GLK1(1)      --------->YAB1       --------->TOE1(3)                               <----- ---P     <---------GLK1(2)     --------->ARR11(3)            <-----------GT1              --------->At5g28300 ----MYB52(1)            <---------ATHB12      --------->TOE2(3)                          --------->LBD16 ---MYB52(1)       --------->MYB52(1) <---------CCA1(2)<-----------GT1 <----------DOF2    -----------   agttgatttccagtttcttcttaacgaatcataagatctcatctctaaaccttcattttccgattcacattccctttaatccaacttcgaaccggtgaat  8951400                                                               --------->TOE2(3)                                                     <---------ZAT14                                                     --------->ZAT14                                                 --------->GLK1(2)                                                 --------->ARR11(3)                                                 --------->ARR14(2) ------->TEIL                          <-------TEIL  --------->At4g35610 --->ARR14(2)                        --------->ARR14(2)       <---------ZAT6 --->GLK1(2)                         <---------GLK1(2)    --------->ZAT14 ->TEIL  <-----------GT1             <---------ARR14(2)   <---------ZAT14                        ---- ----ARR14(2)                --------->YAB1      <---------ARR11(3)                  ----------->GT1 >GT1 <---------CCA1(2) <---------AHL20(2)       <---------ARR14(2)     <---------MYB52(1)      <----   ctgaacccatttctcgcttcttctgttttattcatacccgattcgtttcaaaatctgcagtatagtcttaatctgtttgtgcaagtagagaaaaatcaat  8951500                                                                                             --------                                                     --------->ATHB12                       ---------                                             ------>ZmHOX2a(2)                             ------>ZmHOX2a(2)                                            <------ZmHOX2a(2)                             <------ZmHOX2a(2)                                           <---------ARR14(2)                             --------->CCA1(2)                                           <---------ARR11(3)                            --------->ARR14(2)                                           --------->ARR14(2)                            <---------ARR11(3)                                           --------->ARR11(3)                --------->AHL20(1)                                           <---------AGP1                    <---------AHL20(1)                                           --------->GLK1(2)         <-----------GT1     --------->AGP1                                          <---------GLK1(2)       <---------AHL20(2)     <---------ARR14(2)                                        <---------TOE1(2)         <---------ICU4--------->AHL20(2) --                                      <---------LBD16<---------ICU4 <---------YAB1      <---------GLK1(1)                          --------->YAB1--------->LBD16          --------->AHL20(2)   <---------HSFB2a(2)           --------->ZAT6--------->ICU4 <---------TOE2(2)        --------->ICU4 <---------AHL20(2) <- ------>DOF2             <---------YAB1<---------LBD16 <---------GLK1(1)     --------->AHL20(2)   --- -----ATHB12 <<<<<<<<<TAC1--------->ATHB51<------ZmHOX2a(1)---------->ID1   <---------AHL20(2)    ---   aaagccgaagataacactcgagtggctataattgttttttcccaggatctgtaaatgatttctcgtatttattactaaatattttattcgagatccgaaa  8951600            ---------->ID1                <---------YAB1            <---------CCA1(2)           --------->AHL20(2) ->LBD16  <---------ANAC58              --------->ATHB51                                            - -->GT1   <---------ANAC58              <---------AHL20(2)                                     ------ ------->ARR11(3)                      --------->ICU4                                          <----- --------ARR11(3)                   <------ZmHOX2a(1)     --------->ATHB12                   <------- ------>RVE1(1)             <---------At4g35610  <---------REM1(1)                        <---------TOE2(3) ------>CCA1(1)             --------->At4g35610  <-----------RAV1(1)    <----------DOF2   <---------YAB1   atatctattgtttcgtctcttatagcaatgagctcataggaattatttttggtgttgcagtgatttgattcgaactttcacataagatggctatggtaga  8951700  Previous    Next  AGI:  At1g25480.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G17470.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G68600.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42118.1); contains InterPro domain Protein of unknown function UPF0005 (InterPro:IPR006214) Range:  from: 8948452    to: 8950863    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g25490.1    Description:  RCN1 (ROOTS CURL IN NPA); protein phosphatase type 2A regulator. Identical to Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform (PP2AA1) [Arabidopsis Thaliana] (GB:Q38845;GB:Q38855;GB:Q38952;GB:Q56WI3;GB:Q570B7); similar to PDF1 (65 KDA REGULATORY SUBUNIT OF PROTEIN PHOSPHATASE 2A), protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT3G25800.1); similar to PDF1 (65 KDA REGULATORY SUBUNIT OF PROTEIN PHOSPHATASE 2A), protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT3G25800.2); similar to PP2AA3/PR65 (PROTEIN PHOSPHATASE 2A SUBUNIT A3), protein phosphatase type 2A regulator [A Range:  from: 8951189    to: 8955094    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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