Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     --------->ARR11(3)                   <---------ARR11(3)                                   --------->At4g35610                  <---------CCA1(2)                                     <---------At4g35610                 <---------AHL20(1)                                    ------->GAMYB                 --------->AHL20(1)                                 --------->MYB52(1)--------->ANAC58                 --------->ARR11(3)                            <---------ATHB12     --------->ANAC46    <---------ANAC58                                        --------->MYB46(3)    --------->ANAC46    <---------ANAC58  ----------->HVH21                    --------->ANAC58    --------->ARR14(2)   ---------->ID1<---------ARR11(3)    <---------WOX13(1)  --------->ANAC58    <---------ARR14(2)  <- -LBD16   --------->YAB1              <---------GLK1(2)------>ZmHOX2a(2)--------->ZAT2--------->ANAC58   attttggcttaattagaaatatatctcaccgagtataacagattgccagtatttcgatcgcacccatcagtaacagcagcctatacacaagacaaaacat  8893800                                                                   <---------ARR11(3)                                                            --------->ARR14(2)                                                       --------->MYB52(1)                                                    --------->ANAC58            --------->AHL20(2)                --------->YAB1<---------ARR14(2)      ---------->DOF2             --------->YAB1    --------->AtLEC2  ---------->DOF2                 <---------ICU4    --------->ANAC58             <---------ICU4    <- --------YAB1 --------->YAB1     <---------ATHB12   --------->ANAC46 --------->YAB1          <-------   catgaaaagaaagttttaataatccaattgatcaaatcatgaacagaatcatacatgcaacggattcaaaatcatcaaactaaacatttcgaattgagat  8893900                                   --------->ANAC58                                             <----                                   --------->ANAC58                                           -------                                 ---------->DOF2                              <---------CCA1(2)------   --------->AHL20(2)     <---------WOX13(1)     ---------->DOF2       <---------ZAT18        <------ --------ANAC55(2)   <---------At4g35610   <---------DAG2             ---------->ID1         -------- --TOE2(3)         <---------WRKY38(1)     <----------DOF2----------->GT1------>ZmHOX2a(1)<---------At4g35610   tacataaaaattggatttaagtcaacagattgatagaaagcaaaactttttcaaaggaaaatgaaaaacttagtcctcttgtatccaatttcatcagata  8894000                                                                                      --------->WRKY38(1)                                                                                      --------->WRKY12                                                                                     <------NtERF2                                                                                     --------->At5g28300                                                                                   <---------DEAR3(1)                                                                                   <---------DREB2C(2)                                                                         --------->At5g28300                                                                        <---------MYB46(3)        ---                                                                        <---------DEAR3(2)        ---                                                                       <---------ANAC46          ----     --------->GLK1(2)                                                 <---------DEAR3(1)        <--- --------->YAB1                 --------->ALFIN1                      <---------ABI4(1)   ----------- ---TEIL                <------ZmHOX2a(1)                         --------->MYB52(1)<---------MYB46(3) -->ARR14(2)       --------->ANAC46                               <---------DOF5.7(2)--------->ATERF1(1) --->CCA1(2)      ------->GAMYB<------ZmHOX2a(1)           <---------ANAC46 ----------->ARR10 <------ ---ARR14(2)     <---------ALFIN1    <------ZmHOX2a(1) --------->ARR11(3)<------NtERF2----------->HVH21 ->At4g35610   ----------->RAV1(1)<------ZmHOX2a(1) <------ZmHOX2a(1)------->GAMYB <---------ANAC46   caataagaatcgatagccaacacacaggaagaaggaggaggaagaagagagagaggagacctcgtggataacggcggtgagattggcggtgaccttgtta  8894100                                                                                              ------- ------>ATHB51                                                                                ------- ------>ATHB12                                                 --------->HSFB2a(2)           <------NtERF2 ----->ICU4 <---------ANAC58                     --------->At4g35610                         <------- ------YAB1 <---------ANAC58               <---------ATHB12    <---------HSFB2a(2)         <--------- ---------->WRI1                          <---------TOE2(3)    <---------LBD16  --------->HSFB2a(2) ---YAB1  <-----------GT1             --------->YAB1       <---------GLK1(1) <----------DOF2------>NtERF2   ttattgatggtattacgagctgttttctcgtccaaaccaatactaatgaagagctcaatagatttctcggagttatcgtctttgagaaccatggcgacga  8894200                                                            --------->ANAC58                                                            --------->ANAC58                                                       ----------->HVH21                                                      <------ZmHOX2a(1)                                                 --------->ALFIN1              <---------REM1(1)                                               <---------ANAC46               <-----------ARR10    ---------->DOF2             <---------DAG2 <---------ANAC58         <-----------GT1 -->ANAC58       --------->ANAC58              <---------ANAC58      <----------DOF2 -->ANAC58       --------->ANAC58              --------->ALFIN1      --------->TOE2(3)         <----- --------------WRI1---------->DOF2   ----------->GT1<---------ANAC46 --------->TOE1(3)        <------ -ID1    --------->MYB52(1)  <---------ALFIN1*TSS<---------AtMYB61<-----------GT1          <---------   aactgacaaagtaacagaaacgaaagtgagaccaccttagggtttaatggtgtggaggagacacggttttactttaaccagatgtaacccaagtattggg  8894300                                                                          --------->ZAT18                                                                          --------->ZAT14                                                                          <---------ZAT18                          <------MYB46(1)                             <-----------RAV1(1)                          <------MYB83                              <------------CBF                          ----------->GT1                         --------->ARR11(3)               --      <---------AHL20(2)<---------WOX13(1)                        --------->AHL20(1)               --  --------->ICU4       <------------CBF                           <---------AHL20(1)               --  --------->AHL20(2)  --------->ATHB12                           --------->CCA1(2)              ----- ----ANAC46        <------------CBF                             <---------ARR11(3)              ----- ---LBD16   --------->LBD16       <---------AHL20(2)      ---------->DOF2 <---------ZAT14     <------ ---CBF   <---------LBD16 <---------MYB46(3)  ----------->GT1   --------->ARR11(3)           --------   ggaaatatttaaaccggagtttattgattggttaatttaaaccgaagatggctaatatagaaaagagatatattggtgcagtttgaaaatttcgaaccga  8894400                                                                <---------GLK1(1)                                                                <---------HSFB2a(1)                                                               <---------ARR11(1)                                                               <-----------ARR10                                                               ------->TEIL                                                               ---------->TaMYB80                                                               <---------ARR14(2)                                                              <---------GLK1(2)                                                           <------NtERF2                                                           ------>NtERF2                                                           --------->LBD16                                                         <---------LBD16                                                        ------>NtERF2                                                       --------->ANAC58                                                       --------->ANAC58                                                       --------->ANAC46                                                  ------->GAMYB--------->ARR14(2)                                                  --------->ANAC46   ------>NtERF2            <------                                                 <------------AtMYB77--------->LBD16        ------->TEIL                                                ------>MYB83  <---------CCA1(2)        ------>NtERF2                                     --------->ANAC46 --------->SPL7--------->DEAR3(1)----------->HVH21 ------->TOE2(3)           <---------ARR11(3)   ------>MYB46(1)--------->GLK1(2)  ------>NtERF2 ------->YAB1              --------->ARR11(3)   -------->P--------->DEAR3(1)<---------MYB52(1)------- ------->TOE1(3)     --------->ARR14(2)        ------>NtERF2  <---------ARR14(1)<---------RAP2.6(2) < ->MYB46(1)          <---------ARR14(2)        --------->MYB55(1)   --------->ANAC46  --------->DEAR3(1) ->MYB83             --------->GLK1(2)        --------->DEAR3(1)--------->HSFB2a(1)  --------->DEAR3(2) ---MYB59           <---------ARR14(1)        --------->MYB46(3)--------->GLK1(1) --------->At4g35610 ->DEAR3(2)       ------->GAMYB <-----------HVH21--------->MYB46(3)<---------LBD16<---------At4g35610   accataaacatgaaatgcaaccgaatccagaccttgtccgagccatcgccaaccgctacgccgcgaatctccgcctctgtttgccgctccgacgaacatc  8894500                                                     ------->MYC4                                                     ------->PIF5                                                     ------->MYC3                                                     <-------MYC3                                                     <-------PIF4                                                     <-------MYC4                                                     ------->PIF4                                                     <-------MYC2                                                     <-------PIF5                                                     ------->MYC2                                                    <---------O2 ------>ZmHOX2a(1)                                                    <---------TGA1a                                                    --------->TGA1a                                                    <---------ANAC55(2)                <---------RAP2.6(3)                 --------->PIF3(3)                --------->ORA47(1)                  --------->bZIP60(2)               --------->RAP2.6(2)     <---------ANAC46      <---------ARR14(2)         --------->LBD16               <---------ANAC58      --------->ARR14(2)       <---------LBD16        --------->YAB1        <---------PIF3(3)   --------->ZAT2             <---------ICU4        --------->ANAC55(2)    --------->ATHB12   <---------ZAT2            <---------YAB1       <---------ALFIN1  ------->TEIL<---------TOE2(3)   --------->At4g35610      <---------ARR11(3)    <------------OsbHLH66   <---------YAB1   <---------At4g35610      --------->ARR11(3) --------->ANAC46----------->RAV1(2)      ----------->GT1 ---ARR11(3)   --------->DEAR3(1)   <----------DOF2 --------->O2--------->TOE1(3)   <---------YAB1 -->ARR11(3)  --------->DEAR3(2)    ==========================bZIP_DOF  <---------MYB52(1)      <---- ---------At4g35610  --------->AtLEC2  <---------ANAC58     <---------CCA1(2)<---------WOX13(1) <----   tctgcagctcgcgcgagccgtccatggaaatatcattactttcgggtttcagccacgtgcccatatcctgaaccgtttgattgatgtttattgtaaatcg  8894600                                                                                                  <--                                                                                               <-----                                                                                               ------                                                             --------->MYB46(3)                <-----                   ------>NtERF2                        --------->HSFB2a(2)                    ------               --------->ANAC58                         <---------HSFB2a(2)               --------->LBD16               --------->ANAC58                 --------->AHL20(2)                      <---------LBD16 -------TGA1   --------->ANAC46             ----------->GT1<<<<<<<ZML2               <---------ANAC58 -------HVH21 ------->TEIL      <---------GLK1(1)<---------AHL20(2)                  <---------ANAC58   tcagagctaaattatgcacgccaactgttcgatgaaatctctgaaccagataaaattgctagaaccaccatggtctctggctattgtgcttccggtgata  8894700  Previous    Next  AGI:  At1g25350.1    Description:  OVA9 (OVULE ABORTION 9); glutamine-tRNA ligase. similar to tRNA synthetase class I (E and Q) family protein [Arabidopsis thaliana] (TAIR:AT5G19720.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ74681.1); similar to Glutaminyl-tRNA synthetase (Glutamine--tRNA ligase) (GlnRS) (GB:P52780); similar to hypothetical protein OsI_000666 [Oryza sativa (indica cultivar-group)] (GB:EAY72819.1); contains InterPro domain Glutaminyl-tRNA synthetase, class Ic; (InterPro:IPR004514); contains InterPro domain Aminoacyl-tRNA synthetase, class I, conserved site; (InterPro:IPR001412); contains InterPro domain Glutamyl/glutaminyl-tRN Range:  from: 8889097    to: 8894245    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g25360.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G22070.1); similar to pentatricopeptide (PPR) repeat-containing protein-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC83258.1); similar to hypothetical protein OsJ_023963 [Oryza sativa (japonica cultivar-group)] (GB:EAZ40480.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61016.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 8894415    to: 8896787    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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