Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100    <---------ANAC58                                                                       ------>ZmHOX2a(1)  <---------ANAC58                               --------->ANAC58                       --------->TOE2(3) ----HAHB4                                  --------->ANAC46                   <---------ARR11(3) ---->ATHB12                            <-----------GT1                        --------->ARR11(3)  <- -----ICU4                     --------->ANAC58  --------->ANAC58              --------->ARR14(2)  <- ----YAB1                      --------->ANAC58  --------->ANAC46             --------->RVE1(1)   <-- --->ICU4                    <---------ALFIN1 ------->GAMYB                   --------->CCA1(1)   --- ->YAB1               <---------ZAT18<---------ICU4                         --------->YAB1    ------- -YAB1       <-----------------AGL1 --------->AHL20(2)                   --------->HSFB2a(2)  -------   atttacgtccaagtttcccacttatgcactcacacccatttattacaactcacaccactattcaagaaaatgcttctataatatcttcttcctaaacctt  8692800    ----------->GT1    --------->YAB1                           <---------ANAC58 ------>MYB46(1)                             <---------ANAC46 ------>MYB83                                <---------ANAC58 --------MYB59                             <---------AHL20(2)                                     --- --------MYB46(2)                       --------->ATHB51                                          --- -------ANAC55(2)                       <---------ICU4                                            --- ------>ANAC55(2)                      <---------YAB1                                          ------ -->TOE1(3)           --------->AHL20(2)<--------HAHB4                                        ------>MYB83 -->TOE2(3)        --------->YAB1      --------->ICU4         <----------DOF2                 ------>MYB46(1)   acctaatcgtaatttaggcattgataatatacaatcggctcataattacttgggttctactcttctttccttcacccatactgccaattcactaccatcc  8692900                                                 --------->ATHB12                                             --------->ATHB12                                            <---------YAB1                                          <----------DOF2                                      <---------MYB52(1) --->MYB46(1)                        <----------DOF2     <-----------GT1      <---------ZAT14 ----->P                            --------->TOE2(3)  <----------DOF2        --------->ZAT14 --->MYB83      --------->ANAC58   <------------------------ANAC81          --------->ANAC46 --->MYB46(3)   --------->ANAC58<----------DOF2<---------WOX13(1)         <-----------GT1   aacctcttcaatgctgtaacgcaaaacccaatctctttcctttactttgattgatttctttacttcttgtttctttctactacacaaattggggtatttc  8693000                                    <---------MYB52(1)             <------ZmHOX2a(2)                                    <----------DOF2               --------->ARR11(3)                             --------->YAB1                       <---------ARR11(3)                          --------->YAB1                      <-----------GT1                        <---------At5g28300                <---------------AtSPL8               <----------DOF2 <-----------GT1             <---------------AtSPL3           ---------->ID1 --------->TOE2(3) <---------------------WRI1   <----------DOF2       ------    <-----------GT1    <-----------GT1<---------AtMYB61    --------------->AtSPL8             -------   agtatttgacttcttcgctttcaatttaccataataccctttggtcgtctataagtacaaaattgtacgatctatctttttagttcaagaaaacacccag  8693100                                     <---------ANAC58                                     <---------ANAC46                                     --------->ANAC55(2)                                  --------->ALFIN1                                 ------->MYC4                                 ------->PIF5                                 ------->MYC2                                 <-------MYC2                                 <-------MYC4                                 ------->MYC3                                 <-------MYC3                                 <-------PIF5                                <---------bZIP60(2)                                =======================================bZIP_DOF                                --------->bZIP60(2)                                <---------TGA1a                                <---------O2                                --------->TGA1a                                <---------PIF3(3)                                <<<<<<<<<<HY5                                ==========================================bZIP_DOF                                --------->O2                                ===============================================bZIP_DOF                                >>>>>>>>>>HY5                            <-----------HVH21                           --------->ANAC46                     --------->ANAC58<---------bZIP60(1)                     <---------ANAC58<---------ANAC58                     --------->ANAC55(2)<---------ARR14(2)                     <---------ANAC58<---------ANAC55(2)                     --------->ANAC58--------->bZIP60(1)                    --------------->AtSPL8                    ------->TEIL--------->PIF3(3)                    --------------->AtSPL3                     <----------DOF2               --------------------->WRI1               ------>NtERF2                             ---             <---------ZAT14------>MYB83--------->ARR14(2)  <----------DOF2            ----------->RAV1(1)            --------->DEAR3(1)<---------ALFIN1      --------->ANAC58                   ------>NtERF2        --------->MYB46(3)<---------MYB111(1)       --------->ANAC46                  --------->ANAC46        <---------ABI4(2)----------->RAV1(2)        --------->ANAC58                  ----------->HVH21       --------->ANAC58 ------->TEIL<------NtERF2 <---------AtLEC2           <-------TEIL         ---       --------->ANAC58 --------->ARR14(2)       <---------ZAT14            <-----------GT1     <---- --->LBD16  <---------ALFIN1------>MYB46(1)      --------->ZAT14    <----------DOF2   <---------ETT(1) -->HSFB2a(2)--------->ZAT14<----------------PIF3(2)----------->HVH21     ----------->TBP       -----   aaatttagtaagcaccgctctgtacgtacctgccacgtggcgtaatctctctgcacgacgcgcttcttttctttctatatacatctctccgacacaaacc  8693200                                                        xxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <---------At4g35610                              <---------ATHB12       --------->At4g35610                 <----------DOF2       --------->MYB46(3) --->MYB46(1)                <---------ATHB12        <---------MYB46(2) --->MYB83                 --------->WOX13(1)        <---------MYB59 -----MYB59      <----------DOF2       --------->ANAC58------>MYB83              --------->TOE2(3)  - ---->AtMYB61 *TSS       <---------YAB1--------->ANAC58------>MYB46(1)      <-------GAMYB          <-   taacccttcttctgaatcactttagttatcaatcgatagaaacgcctttcaattaccaaacatcgaaaccaccatgagggttatctcaaaactgttcgat  8693300                                                            <---------At4g35610                                                            --------->At4g35610                                                        <-----------HVH21                                                       --------->TGA1a              --------->MYB52(1)                                                       ====================================MYC_MYB                                                       <---------O2               --------->MYB46(3)                                                       <---------bZIP60(1)        <---------MYB55(2)                                                       --------->bZIP60(1)      --------->ARR14(2)                                                       --------->ANAC58      --------->bZIP60(1)                                                       <---------TGA1a       --------->TGA1a                                                       --------->O2          --------->bZIP60(2)                                                       ===========================MYC_MYB                                                       --------->ANAC58      <---------bZIP60(1)                                                       --------->ANAC46      <---------O2                                                       --------->bZIP60(2)   --------->ANAC58                                                      <-----------STF1       --------->O2                                                      <-----------bZIP910(1) <---------ANAC55(2)                                                      ------>NtERF2          --------->ANAC58                                                     <---------ALFIN1  ---------->CDC5--------->DEAR3(1)                                                  --------->ANAC46     ================MYC_MYB                                              ===================bZIP_DOF<---------At4g35610 --------            <---------ARR14(2)                ---------->DOF2     ------>ZmHOX2a(1)------->GAMYB            --------->ARR14(2)            ------>NtERF2<---------ANAC55(2)   --------->ANAC55(2)    --------->At4g35610                   --------->LBD16--------->TGA2(2)   ==============MYC_MYB    <---------At4g35610                  <---------LBD16<-----------TGA1 --------->At4g35610 -------- ---------->RAV1(1)      --------->DEAR3(1)   =========================================bZIP_DOF --------ETT(1)     --------->ARR14(2)  <---------LBD16--------->ANAC55(2)--------->DEAR3(1) --------   tccgacagaagacgaatacccaaatcgccgaagcatttggattccggcgaaagcgccacgtcatcttcctcactcagcgacgtaaccaccggctcaagca  8693400                                                                         --------->DEAR3(1)                                                                    <-----------TGA1                                                                    <-----------HVH21                                                                   --------->DREB2C(2)                                                                   --------->ANAC46                                                                   --------->DEAR3(1)                                                                --------->AtMYB61                                                                --------->DEAR3(1)                                                                <---------ALFIN1                                                               <---------MYB55(2)              ------                                                               --------->MYB46(3)      <---------MYB52(1) ->ANAC58                            <---------ZAT18         --------->ANAC46          --------->DOF5.7(2) ->ANAC46                          <---------At4g35610      --------->MYB46(3)        <-------GAMYB ->ANAC58                          --------->At4g35610      <---------MYB55(2)        <-----------HVH21   gccttcatagcagtctctctctccaaacgcttccttcagttccctctcttcagaaaatcccatccaccaccgtcaccgtctctcactccgttacctcctc  8693500                                                  <-------GAMYB                                          <---------WRKY12                                        <-----------HVH21                  --------->HSFB2a(1)   ------>NtERF2                      --------->ANAC58           <---------DOF5.7(2)          <---------RAP2.6(3)       <---------ARR14(2)          --------->REM1(2)            --------->RAP2.3(3)        --------->ARR14(2)   --------->TOE1(2)         --------->DOF5.7(2)           --------->DEAR3(1)      <---------ANAC58      --------->ARR14(2)         ----------->HVH21   <---------ANAC58    --------->MYB55(2)        --------->ANAC58   ------>ZmHOX2a(2)        --------->LBD16      <---------ANAC58    <---------MYB46(3)        --------->ANAC46  <------ZmHOX2a(2)       <---------ANAC46 ------>ZmHOX2a(1)<------NtERF2         <---------ANAC58      --------->ARR11(3) >ZmHOX2a(1)      <---------HSFB2a(1) --------->RAP2.3(1)      <---------ANAC46      <---------ARR14(2)   gtttaaactccgtgaacggagtcttcctgtaacttgtctcgccgtcaatggtggttacctcttcgccgtgtctggacacgaagtaagtatctacgatcgc  8693600                                               --------->ARR14(2)                                      <----------DOF2                                      ------>ZmHOX2a(1)                                    ------>ZmHOX2a(2)                                    =================HOX2a_HOX2a                                   ==================HOX2a_HOX2a                                   <------ZmHOX2a(2)                                  --------->ARR14(3)              <----------DOF2<---------ARR11(3)                                  <---------ARR14(3)            <---------At4g35610         ------>NtERF2                                  <---------GLK1(2)             <------NtERF2    --------->ARR14(2)                                  --------->ARR11(3)           <---------DEAR3(2)--------->ARR11(3)                                  --------->ARR14(2)          <---------DEAR3(1) <---------ARR14(2)                                  <---------ARR14(2) --------->ZAT14             --------->GLK1(2)                                  <---------ARR11(3) --------->REM1(2)  --------->LBD16 --------->ANAC46      <---------At4g35610       ----------->ARR10   <---------MYB52(1)<---------LBD16  <---------LBD16    --------->ZAT18        ------->GAMYB       <---------ARR14(2)<---------GLK1(2)   <---------REM1(2)    <---------ZAT18       --------->MYB46(3)  <------ZmHOX2a(1)------>NtERF2     --------->ARR14(3)  ------->MYC3           <---------At4g35610<---------TOE1(2)<---------MYB52(1)  <-----------ARR10  <-------MYC3          --------->MYB52(1) <---------LBD16  <-----------HVH21    <---------ARR14(3) -   gacatgtgtgctcatctcgacacattcaacggccaagatcctttctcaggaaccgtgaagtccgtcggcttctccggtgagaaaatcttcacggcgcatc  8693700  Previous    Next  AGI:  At1g24530.1    Description:  transducin family protein / WD-40 repeat family protein. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT1G24130.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42478.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 8693214    to: 8694692    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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