Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             <-------GAMYB                                          --------->MYB111(2)                                          --------->MYB55(2)                                          <---------MYB46(3)                                        <---------ANAC58                                        <---------ANAC58                                       <---------MYB46(3)                                   --------->ATHB12                                   <---------AHL20(2)                                  <---------AHL20(2)                                 <---------WOX13(1)                                 <----------DOF2                                                <----                <---------YAB1------>ZmHOX2a(1)                                                ------ -------->MYB46(3) <----------DOF2--------->AHL20(2)      <-----------GT1        <---------TOE2(2) -->YAB1<---------AHL20(1)  ----------->RAV1(2)        <---------AHL20(2)        <---------TOE1(2) ---ICU4<---------ARR11(3)<-----------GT1 --------->MYB111(1)          <----------DOF2         <-----   caccctccaatatatgttattctttttttctcctgatttattggttgttagatgtaatttatactatttcagtcttttcatcgtatgtttcacatatttt  8681800                                    <-----------GT1                        --------->YAB1                                               <----------DOF2                        <---------ICU4                                               <---------DAG2                       --------->ICU4                                             <-----------GT1                       <---------ATHB12                  ---------->DOF2<---------ARR11(3) -----YAB1 --------->YAB1      --------->ICU4           --------->AtMYB61  <---------YAB1           < --->AHL20(2)        --------->WOX13(1)    <---------TOE2(3)   <---------ANAC46<---------ZAT6       - ----AHL20(2)       --------->MYB46(3)--------->ZAT6   --------->ANAC46 --------->ARR11(3)<-------GAMYB   tatacttaaacaaaaatcactaacaatcatgaaatgtttatctctatggttttctccaccaaagttcgggtatagatattagtgttacttttcgttgtag  8681900                                                                       --------->ARR14(2)                                                                      <---------CCA1(2)                                                           <---------ARR11(1)                                                           --------->ARR14(2)                                                          <---------CCA1(2)                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                            ----------->GT1<---------ARR14(2)       ----------->GT1                 --------->DOF5.7(2)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <---------REM1(1)               <---------MYB46(3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------ZAT14           <---------YAB1                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    --------->ZAT14    <---------WOX13(1)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->YAB1<-----------GT1 <---------AHL20(2)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------ARR11(1) --------->AHL20(2)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<---------ARR14(2) ---------AHL20(2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    xxxxxxxxxxxxxxxx>smallRNA(i)------ -------->AHL20(2) <---------DOF5.7(2) <---------YAB1     <---------ARR14(1)    xxxxxxxxxxxxxxxxxxxxx   aatttaattggttatagttgttaacgagtgatttataggttgtgaatggtgactaaaaccgtatccaaaaccgtatcgtaacagtgttgtaacaatatca  8682000                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                               --------->ANAC58xxxxxxxxxxxxxxxxxxxxxx                                                              <---------LBD16<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                          <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                         <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                         <---------DAG2  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                         <----------DOF2 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                     --------->ZAT14  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                     <---------ZAT18 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                 <---------ALFIN1    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                --------->ZAT14--------->ANAC46xxxxxxxxxxxxxxxxxxxxxx                                                --------->ZAT18--------->ANAC58xxxxxxxxxxxxxxxxxxxxxx                                                <---------ZAT14<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                               xxxxxxxxxxxxxxxx>smallRNA(s)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                               <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                               --------->DEAR3(1)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                              <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                              --------->MYB46(3)--------->LBD16<xxxxxxxxxxxxxxxxxxxxx                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         xxxxxxxxx                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          ------>NtERF2                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxsmallRNA(i)                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(i)                                            <-----------GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxx                                      <---------AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <xxx                                     <---------YAB1  <---------ZAT14<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                     xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                     --------->ICU4--------->ANAC46xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <---------AHL20(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <-----------GT1        ------->TEIL xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <---------ICU4         --------->ANAC55(2)xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --->YAB1 --------->AHL20(2)      <---------YAB1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <xxxxxxxxxxx xx>smallRNA(i2)   ------->TEIL  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   aaatttttacatatatatatgtatttatgtatttttgttattatttgaaccgcactgcacttttcccgcatcgcaaaacacagtcaccattcggagccat  8682100           <---------YAB1      ----------->GT1   <-----------RAV1(1)  <---------TOE2(3) >smallRNA(fl3)                        --------->DAG2 >smallRNA(le3)                   --------->AHL20(2) >smallRNA(se3)            ----------->GT1     <-----------TBP <---------MYB52(1) xsmallRNA(fl3) <---------At5g28300  ---------->DOF2         <---------MYB46(3) xxxxxxxxxxxxx>smallRNA(si3) ------------>CBF  --------->CCA1(2) >smallRNA(si3)<-----------GT1    --------->YAB1          <-----------RAV1(1)                      -- xxxxxxxxxxxxxsmallRNA(i) --------->DAG2      <---------ARR11(3)              --------->YAB1  <------MYB46(1) xxxxxsmallRNA(i)        ---------->DOF2      --------->ARR11(3) --------->MYB52(2)           <------MYB83   agtttatgttgttatatttaccctagaaaaagtcaataaaaaaggtgagatatatagtttgtgttgttagttttaaaaaatcagaaaaacaaaatttggt  8682200                      *TSS                    <------MYB46(1)                                                   --------->HSFB2a(1)                    <------MYB83                                                     --------->ARR11(3)                <------MYB46(1)                                                      <---------ARR11(3)                <------MYB83              --------->ANAC58                           <---------ARR11(1)               --------->MYB59            --------->ANAC58                           --------->ARR14(2)              --------->ZAT14        --------->ANAC58                                <---------ARR14(2)             <---------MYB52(1)      --------->ANAC58           --------->YAB1       <-----------ARR10   <---------ALFIN1 <---------DEAR3(2)  ---------->DOF2 ----------->RAV1(1)         <---------CCA1(2) ------->At4g35610 <---------MYB46(3)--------->ANAC46  --------->MYB46(3)----------->RAV1(1)        -   ttgctccacttctcagttcggtcggtctcgcacactgagacgcaaagcaagaacacaacaacacaacaatactgccaacaaaatccaaatcttccccatt  8682300                                                                               ------->TEIL                                                                              <---------ALFIN1                                                                            --------->ANAC58                                                                            --------->ANAC58                                                                            --------->ANAC46                                                                           <------NtERF2                                                                          <---------ATERF1(1)                --------->TOE1(3)                                         ------>NtERF2          ------->GAMYB                                                  --------->DEAR3(1)          --------->AtMYB61                                             --------->DEAR3(2)   ------>ZmHOX2a(1)         --------->MYB46(3)  ------>ZmHOX2a(1)                      ---------->DOF2     ------>ZmHOX2a(1) --------->ID1  --------->TOE2(3)                             <---------ARR11(3) <---------DAG2<-----   ttgtcttctcaaccaaaaccctaaaactctccttccttcttctccctagagatgtcttcaacaatatccctaaagccgacgcaccttatcctctcctctt  8682400                            <---------ALFIN1                            --------->ATERF1(1)                           --------->At4g35610                           <---------At4g35610                           ------>NtERF2                           <---------ATERF1(1)           <---------DEAR3(1)                           --------->ABI4(1)            <------NtERF2                          <---------ATERF1(1)      <---------DEAR3(1)                          --------->DEAR3(1)    --------->DEAR3(1)                          <---------ALFIN1   --------->ANAC46                         --------->RAP2.3(1) <---------ALFIN1                        <---------At4g35610 --------->MYB46(3)                    --------->ARR14(2)      <---------MYB55(2)        ---------->DOF2 --------->LBD16    <---------ALFIN1     --------->ANAC58   ------>NtERF2      --------->ANAC58                        --------->At4g35610     --------->ANAC58  --------->ANAC46    --------->ANAC58<------NtERF2           <---------At4g35610     --------->ANAC46 <---------LBD16    ----------->RAV1(1)         <---------DOF5.7(2)        <---- <---------ALFIN1   <---------ARR14(2)--------->ANAC46<---------DEAR3(1)         <---------CCA1(2) -----DOF2     ------>ZmHOX2a(1)   <-----------HVH21 <------NtERF2 --------->DOF5.7(2)         <-----   tctccacaggcaaagtcctccaattccgccgctcccgtttcagccacacaccgtcgtcgtcgtcgtctcgttatcggactctcgtagctcaactcgggtt  8682500                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                   <-                                                                    <---------MYB52(1)             --                                                                 <------NtERF2                     --                                                      =============================HOX2a_HOX2a    <--                                                     <------ZmHOX2a(2)                            <--                                               <---------ZAT14 --------->DEAR3(1)                 ---                                          --------->At4g35610 <---------RAP2.6(2)                 ---                                      --------->GLK1(2)   --------->At4g35610                    ----                                      <---------ARR14(2)  <---------At4g35610                    <---                                      --------->ARR14(2) ----------->HVH21  --------->At4g35610  <---                                      <-----------ARR10<---------At4g35610  ------>ZmHOX2a(1)   <----                                     <---------GLK1(2)------>ZmHOX2a(2)<---------ANAC58      <-------      --------->GLK1(2)           ------>NtERF2<---------REM1(2)------>NtERF2 ----------->HVH21 <----     <---------ARR14(2)           --------->LBD16    ==============================HOX2a_HOX2a<------     --------->ARR14(2)  <------ZmHOX2a(1)<---------At4g35610 --------->ATERF1(1)    ----------------     <---------GLK1(2)   ===================================HOX2a_HOX2a<---------ANAC58   ------->TEIL ---TEIL <----------DOF2 ====================================HOX2a_HOX2a    <---------At4g35610 ----- ------HVH21<---------YAB1    --------->AtLEC2 --------->ZAT14--------->RAP2.3(1)   --------->TOE2(3)   cagaccagattcttttgatttcatcaaggaccatgccgagaatctgctgtacacgatcgctgatgccgccgtttcgtcctctgaaacctttgaatctgtc  8682600 <------NtERF2 ---------ATERF1(1) ----->NtERF2 -------->LBD16 ------->RAP2.6(2) ------->ATERF1(2) --------DEAR3(1) --------ATERF1(2) ------->ANAC46                   <---------MYB46(3) ------->DEAR3(1)                 <------MYB83 -------LBD16                     <------MYB46(1) ----NtERF2                     <---------WOX13(1) ------>ATERF1(1)             <--------ATHB1 ------>RAP2.3(1)             -------->ATHB1 -->NtERF2                    --------->YAB1 ------ATERF1(1)              --------->ATHB12 ------RAP2.3(1)              <------------ATHB5 -----DEAR3(1)                <---------ICU4 ----RAV1(1)                 <---------ATHB12                                               <-------- -----ETT(2)                 --------->ICU4                                               ---------->ID1 -----HVH21                  <---------YAB1                                      ---------->DOF2 ----->WRI1--------->AtMYB61 <---------ATHB51         <---------AHL20(2)        <---------AHL20(2) ---->ETT(2)          --------->LBD16              <---------ICU4          <---------ARR11(3)   gccggcactactaccaaaacgacccagagcaatgattggttctctggtattgctaattacatggaaactattctcaaggtattaaaagttttgtcttttt  8682700  Previous    Next  AGI:  At1g24485.1    Description:  similar to protein kinase-related [Arabidopsis thaliana] (TAIR:AT3G46280.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21739.1) Range:  from: 8678846    to: 8681716    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g24490.1    Description:  ALB4 (ALBINA 4). similar to ALB3 (ALBINO 3), P-P-bond-hydrolysis-driven protein transmembrane transporter [Arabidopsis thaliana] (TAIR:AT2G28800.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42463.1); contains InterPro domain 60 kDa inner membrane insertion protein; (InterPro:IPR001708) Range:  from: 8682222    to: 8685262    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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