Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      <---------AHL20(2)   --------->AHL20(2)   <---------AHL20(2)  <---------YAB1 ------->ATHB1 --------HAHB4 ---------ICU4                           <---------YAB1        --------->ANAC58 -------->ATHB51              <---------TOE2(3)                --------->ANAC46 ------->ICU4                ---------->DOF2                   --------->ANAC58 --------YAB1               --------->AHL20(2)      --------->ANAC58                             <--- -->YAB1                    <---------AHL20(2)      --------->ANAC58                             <---   aattattaaatataaaacaaattagcaaaattaaagaaacaatatgaaaatagtaggcaaaacataagcaaaacaaattttggtcaaaaatagaaattta  8673600                                                                            <---------ICU4                                                                           --------->AHL20(1)                                                             --------->ANAC55(2)                                                             --------->ANAC55(1)                                                             --------->ANAC58                         --------->ATHB12                    <---------ANAC55(2)                        --------->ICU4                       --------->ANAC58                        <---------YAB1                      ------->TEIL   <---------ARR11(3)                      <---------ICU4                    --------------->AtSPL8                      -------->HAHB4                    <---------------AtSPL8                      --------->YAB1                    <---------------AtSPL3                     --------->ICU4                --------->ANAC46        <---------AHL20(1)                     <---------ATHB12            --------->ANAC46  -------->HAHB4                <---          <---------TOE2(3)    xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->AHL20(2)   ----- <-------TEIL     <---------AHL20(2)             --------->ANAC58  --------->YAB1               ----- ------TOE1(3)   --------->AHL20(2)              --------->ANAC58 --------->ICU4                <---- ------TOE2(3)   <---------AHL20(2)           --------->ZAT14--------->ANAC46         xxxxxxxxxxxxxxx   aggttcaaagttgagataaataaatgattattgatatagaaactaaactacacacaaaactgtacgtaataatacaaaatattacaaaaacattcaaatt  8673700                                                                                 ------>MYB83                                                                                 --------->MYB52(1)                                                                                 -------->P                                                                                 ------>MYB46(1)                                                                               <---------MYB46(2)                                                                               <---------MYB111(1)                                                                               xxxxxxxxxxxxxxxxxxxxxx                                                                               <---------MYB59                                                                               --------->AtMYB61                                                                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                              --------->MYB46(3)                                                                             ------>MYB83                                                                             ------>MYB46(1)                                                                          --------->MYB46(3)                                                                          <---------MYB59                                                                         --------->ANAC58                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                         --------->ANAC58                                                           ------>ZmHOX2a(1)------>MYB83                                                          --------->TOE1(3) ------>MYB46(1)                                                          --------->TOE2(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             --                                                --------->YAB1           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          --------------->AtSPL3               <------ZmHOX2a(2)     <-----------HVH21            <-- ----------->GT1                               ===================HOX2a_HOX2a-------->P          <--- ------AHL20(2)                               <---------ARR11(3)   <------NtERF2--------->MYB55(1)=== ---->AHL20(2)                                --------->ARR11(3) <---------DEAR3(1)              ---- ---->AHL20(1)                        --------->ICU4  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  -------- -----AHL20(2)                        <---------YAB1<---------ARR11(3)--------->DOF5.7(2)<xxxxxxxxxxx xxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   taatggtatatagccgtattacttagatggcaattgtgtaatgaatgagatcataatcttccttaagacggcgttacccaacctaccagtctccctaaag  8673800                                                                        --------->AHL20(1)                                                                        --------->AHL20(2)                                                                        <---------ARR11(3)                                                               --------->ANAC58                                                               --------->ANAC58                                                         <---------ANAC58                                                         <---------ANAC46          ================HOX2a_HOX2a                <----------DOF2    <---------AHL20(1)          ------>ZmHOX2a(1)                         <---------DAG2      <---------AHL20(2)         --------->TOE2(3)                         ----------------->AGL1   <---------ARR11(3)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) x>smallRNA(si3)                 <---------------AtSPL8  <---------ANAC58 <------------CBF ------->YAB1         --------->ANAC55(2)         ---------->ID1        --------->ARR11(3) ----ZmHOX2a(2)       <---------ANAC55(2)   --------->ATHB12xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------ARR11(3)    <------ZmHOX2a(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)----------->GT1 ================HOX2a_HOX2a ------>ZmHOX2a(1)   <-----------GT1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ----->ARR11(3)    =================HOX2a_HOX2a<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             ---- -->DOF2 --------->TOE1(3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->AHL20(2)        ------ xxxxxxxxxxxxsmallRNA(si3) --------------->AGL15----------->HVH21    --------->YAB1       -----------   atcataatcttccttaagacgatcacttatcctatatagtacatgttgatttgaccttttcttgtaagctataatatattgtaaaacacattttgtataa  8673900                                                                 --------->MYB59                                                                 --------->MYB52(2)                 ----------->GT1                              ------------>MYB.PH3(2)        <------------CBF                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <-      <---------YAB1                                <---------------AGL15                         --- xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              ================================================= ------->GT1    --------->ANAC58                    ------>ZmHOX2a(1)                             --- ---->DOF2      --------->ANAC58               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          -------- >GT1 <---------TOE2(3)                 --------->ZAT6   ---------->DOF2         <-----------HVH21<--   agaaaattaagattgagcaaggaaaataatctctctctctcaactctagttttcctacttaaagagttagttccaaaccaaaatgtcatgacaaataatc  8674000                                                                                       <---------ANAC58                ---------->DOF2                                                        <---------ANAC58     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    --------->LBD16           <---------ANAC46    <---------------AGL15                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   --------------->AGL15                                 <xxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------------AGL15                                <---------GLK1(1)        xxxxxxxxxxxxxxxx>smallRNA(i) --------->MYB52(1)                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------MYB52(2)                                       <---------At4g35610    xxxxxxxxxxxxxxxx>smallRNA(i) ------>At4g35610       ---------->DOF2                ------->TEIL <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ==================MADS_MADS     --------->At4g35610--------->ANAC58xxxxxxxxxxxxxxxxxx>smallRNA(fl3) ------>ZAT2<------ZmHOX2a(1)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ->YAB1   ----------->GT1     ---------->DOF2       --------->ANAC58<xxxxxxxxxxxxxxxxsmallRNA(i) <xxx -------At4g35610   ---------->DOF2      --------->AtLEC2<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <xxxx   agctaacaaatataggaaaaaagaaagaaagagaaagcagaacatgcagggagcatgcatctccgagagtcagccatggtatctccatttcgtatgcttc  8674100                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                            ---------                                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                        --------->ANAC58    ---------                                                                        --------->ANAC46    xxxxxxxxx                                                                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                        --------->ANAC58   --------->SPL7                                                                       <xxxxxxxxxxxxxxxxsmallRNA(i) x                     --------->ZAT18                                  <---------ALFIN1     --------->RAP2.6(3)                ------>ZmHOX2a(1)                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               --------->TOE2(3)                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxx             <---------------AGL15                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     --------->SPL1(2)             --------------->AGL15       xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                xxxxxxxxxx             ==========================================MADS_MADS    <---------ALFIN1      <---------ARR14(2)         <----------DOF2     <---------ICU4      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      --------->ARR14(2)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxx>smallRNA(i)               <---------SPL7    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)------>ZmHOX2a(1)  <---------GLK1(2)    --------->At4g35610xx   <----------DOF2   <---------ZAT18   --------------->AGL15        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<-----------------AGL3        xxxxxxxxxxxxxxxx>smallRNA(i)<xxxx <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<-----------------AGL1       ------>ZmHOX2a(1)   <------------- xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    ----------------->AGL3    ------>ZmHOX2a(1)    xxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  ------>ZmHOX2a(1)      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxx   ataggctttctctttctccttagagtactattcattcctctcctaaaatggttcaccacaagattcctcctcacacccaagcggctcaagcggtacggct  8674200                      --------->DEAR3(1)                     <------NtERF2                   --------->DEAR3(1)    <----------DOF2                  --------->ATERF1(1)   <----------DOF2                  --------->MYB46(3)   <------NtERF2                  <---------ABI4(2)   ------>NtERF2                 <---------ATERF1(1) --------->ANAC58   xxxxxxxxxxxxxxxx>smallRNA(i) <---------SPL7 xxxxxxxxxxxxx>smallRNA(fl3)    ----------->HVH21 xxxxxxxxxxxxx>smallRNA(si3)  --------->At4g35610 >ANAC58    <xxxxxxxxxxxxxxxxsmallRNA(i)<---------DAG2 >ANAC58<-----------HVH21     <---------At4g35610 xxxxxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->ANAC58           --------->ANAC58 xxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->ATERF1(1)         --------->ANAC46       --------->At4g35610 xxxxxxxxxxxxx>smallRNA(si3) <---------ARR14(2)     --------->At4g35610                <---------ZAT2 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------ATERF1(1)          --------->ANAC58 ------>ZmHOX2a(1) xxxxxxxxxxxxxxxxxsmallRNA(si3)------>ZmHOX2a(2)    --------->ZAT2   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --AtSPL3<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------At4g35610   --------->TOE2(3)    <----- xxxxx>smallRNA(si3)------>NtERF2 --------->SPL7    <---------ZAT2   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxsmallRNA(fl3)--------->ARR14(2)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------At4g35610   catgggctatggtcactggagccaccgaggggatcggacgcgcctttgctcacgagctggccaaacacggccttaacctcatcctagtcagcagaaacct  8674300                        <---------GLK1(1)                    --------->KAN4(2)                        --------->GLK1(1)                   <---------KAN4(1)                      <---------ICU4                        --------->KAN4(1)                 <------                      --------->ATHB12                     <------ZmHOX2a(2)                  <------         --------->GLK1(2)                                 <---------YAB1                    --------         ------->TEIL<---------YAB1                  <------ZmHOX2a(2)                     --------->YAB1         <---------ARR11(1)                          =================================HOX2a_HOX2a         --------->ARR14(2)                         <---------ARR11(3)                    <---------ATHB51        <---------CCA1(2)                           --------->ARR11(3)<-----------GT1   --------->YAB1   --------->ZAT2  <---------At4g35610     <---------ALFIN1===========================HOX2a_HOX2a   <---------ZAT2  --------->YAB1     <---------ARR14(2)  <---------ARR11(3)      ----------->GT1 ----DAG2<---------ARR14(2)           --------->ARR14(2)  --------->ARR11(3)   ------>ZmHOX2a(1)   ttcgaagctcgaatctgtctctgatgatttccaacaagagtttccccacatcaagatcaagatcattccatttgacttctcctctggtaacaataataaa  8674400                                                                                                  ---                                                                                              <------                       ------>ZmHOX2a(1)                 <---------ANAC46                     -------  <----------DOF2 --------->WOX13(1)                     <---------YAB1                       <------ ---AHL20(2)    --------->WRKY18(1)                      <---------ANAC55(1)                  ------- ---ICU4  <----------DOF2                             --------->ICU4                   --------->ZAT6 ->AHL20(2)  --------->MYB59                     --------->ETT(2)                    --------->YAB1   tacactttcttactttaggtcaatcctatagaactagtctatacatagttatcgacattatgtgtgtgtgtgtgtgtgtgtgtgtattaatactagtaca  8674500  Previous    Next  AGI:  At1g24470.1    Description:  short-chain dehydrogenase/reductase (SDR) family protein. similar to YBR159, ketoreductase/ oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G67730.1); similar to 3-ketoacyl-CoA reductase 2 [Gossypium hirsutum] (GB:AAY23355.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 8674044    to: 8676396    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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