Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               --------->At4g35610             <---------ZAT2                                                                         -             --------->ZAT2                                                                         -             <---------At4g35610                       --------->LBD16                     --------->HSFB2a(2)   ------>NtERF2                                --------->WOX13(1)                         <---------HSFB2a(2)   ----------->RAV1(1)                --------->WRKY38(1)   ---------->DOF2               <---------LBD16  --------->ANAC46                    --------->WRKY45--------->HSFB2a(2)                ------>ZmHOX2a(1) ------->TOE1(2)                      --------->WRKY12<---------HSFB2a(2)                ============ ------->TOE2(2)           ----------->GT1    <---------ATHB12             <---------ARR11(3)     --- -------->RAV1(2) --------->LBD16  --------->TOE2(3) <---------LBD16 --------->YAB1  --------->ARR14(2)   acctgcgccagtttcagctccagagtcagaagtaaaacctttgactaaatcaatctccagaagaaagacaatgacaagaccattcagtttcctctggaag  8634800               -------->ATHB1               <---------ICU4               --------->ATHB12              <---------YAB1            --------->WOX13(1)                      <---------ANAC58           ------------>ATHB5          <---------ANAC58                             ----------->GT1          <------ZmHOX2a(2)            <---------ANAC46  ------>ZmHOX2a(1)    --------->LBD16<-------          ========================HOX2a_HOX2a       <---------ETT(2)        <---------LBD16  -------- -------->ANAC58           ------>ZmHOX2a(1)        --------->ETT(2)  --------->ANAC58       -------- -------->ANAC58     --------->ZAT6    <---------ANAC58 --------->TOE2(3)  --------->At4g35610   <--- ================HOX2a_HOX2a<---------TOE1(2)       <---------ANAC58  --------->ANAC58       <------- ------->DOF2 <---------ATHB12  ---------->DOF2  <-----------RAV1(1)  --------->ANAC46    --------->AHL20(2)   aaaagccactcgatccatcattgacactcctatgtaaagttgcgttttcttctgtcgtccttaacttcttacaagtcatccgcatagagaaaaaaaatat  8634900     <-----------HVH21    --------->ANAC46                                                                   ----------->GT1    --------->bZIP60(2)                    ------>ZmHOX2a(1)                         <-----------RAV1(2) --AHL20(1)                        <---------TOE2(3)                     --------->ZAT14 ->AHL20(1)         --------->ANAC46   ------->TEIL                      --------->ZAT18 ->ARR11(3)         --------->ANAC58   <---------ARR14(2)                <---------ZAT14 ------------AtSPL8 --------->ANAC58   --------->ARR14(2)      --------->AtLEC2    ------->TEIL --ARR11(3)   <---------YAB1      --------->MYB52(1)     --------->GLK1(1) <---------At4g35610<------   ttgtacaggtcacattgtgatcacaccattttttgctaacgaatcctctctcgcgagaggtatccatgtagatagtctactgatgtatcaggttatatat  8635000             --------------->AtSPL8         <----------DOF2         <---------DAG2    --------->TOE2(3)                                           <---------AHL20(2)     --------->ALFIN1 <-----------GT1              <---------ETT(2)            <---------At4g35610      <-----------RAV1(2) ---AHL20(2) --------------->AtSPL3                  ----------->HVH21       <---------DEAR3(2)   atgaaacctcacttttcagtacaaaaacagagtcgacaattcttgaaaactctgtttgacatctgtttattttgacggtcgattcacaggtggaccaatt  8635100                                                                                                  ---                                                                                                  *TSS                                                                                           --------->ZAT2                                                                   --------->YAB1       ----------->RAV1(2)                              --------->AHL20(2)                  <---------YAB1        <---------At4g35610                          <---------YAB1                         --------->AHL20(2)   <---------ALFIN1                   --------->ANAC58              <---------ANAC55(2)     ---------->DOF2--------->At4g35610                   --------->bZIP60(2)       -------->HAHB4     --------->CCA1(2)  --------->AtMYB61                   --------->ANAC46         <---------YAB1     --------->ARR11(3) --------->MYB46(3)                   --------->ANAC55(2)    --------->YAB1<----------ID1--------->YAB1<-----------HVH21                   <---------O2          <---------AHL20(2)    <---------ARR11(3)------>NtERF2  <----                   --------->O2<---------ICU4--------->YAB1  --------->ANAC58   <---------ALFIN1<----  ----------->GT1  --------->ANAC58     --------->AHL20(2)   --------->ANAC58--------->PCF2--------->At4g35610   ctagtggataaaactagtgccacgtagtatgaataaatactatataataatacttaaaatgacaagatataataacaaagccccaccatcacctgctgtc  8635200                                                                                   <---------ALFIN1                                                                                   --------->ATERF1(1)                                                                                  --------->At4g35610                                                                                  --------->LBD16                                                                                  ------>NtERF2                                                                                  <---------At4g35610                                                                              <-----------RAV1(1)                                                                          <------NtERF2                                                                          <---------MYB52(1)                                                                         <-----------TGA1                                   <-----------TGA1                      <-----------HVH21                              <---------GLK1(1)                          <---------RAP2.6(3)                              --------->At4g35610                        ------>NtERF2                              --------->GLK1(1)                         --------->O2--------->DEAR3(1)        --------->ARR14(2)    <---------At4g35610                       --------->RRTF1(3)        <---------ARR14(2)   <-----------ARR10                          --------->RAP2.3(2)       <------NtERF2        <---------ALFIN1                            --------->bZIP60(1)       --------->ATERF1(1) ------>NtERF2                                --------->RRTF1(2)      ------>NtERF2        --------->LBD16                              --------->ANAC46      <---------ATERF1(1)  <------NtERF2                                --------->DEAR3(1)     <---------ANAC58     --------->RAP2.6(2)                           --------->RAP2.6(2)     <---------ANAC58     --------->DEAR3(1)                            --------->ATERF1(2)     <---------ANAC46    --------->RAP2.3(1)                            <---------ATERF1(2)     --------->DEAR3(1)  --------->ATERF1(1)                            --------->RAP2.3(3)     <---------DEAR3(1)  <------NtERF2                                 --------->RAP2.3(1)    ------>NtERF2        <---------LBD16                               --------->RRTF1(1)    <------NtERF2       <---------RAP2.3(1)                            --------->ERF1    --------->RAP2.3(1) ------>NtERF2                                 --------->LBD16    --------->ATERF1(1) <---------ATERF1(1)                           ------>NtERF2<------NtERF2   <---------ATERF1(1) <---------ETT(2) <---------ICU4                <---------ATERF1(1)  <---------DEAR3(1)   <---------DEAR3(1)                            --------->ANAC46------>NtERF2<-- <---------LBD16     <-----------HVH21 --------->ICU4                --------->DEAR3(1)        <----- --->ZmHOX2a(1)     <-----------RAV1(1)<---------YAB1               <---------LBD16--------->RAP2.3(1) -----ANAC58 <---------MYB52(1)   --------->ANAC46              <-----------HVH21 <---------ATERF1(1) -----ANAC58<-----------HVH21------->TEIL            --------->LBD16--------->ATERF1(1)  xxxxxxxxxxxx   ctgcgcggcgtctccgtcgtctctgtcgccgcatctccgtcatcattttcgctaccgcataatctctgtctccgccgtcactgccgcagcctagaatatg  8635300                                                              ------>MYB46(1)                                                              ------>MYB83                                                           <---------HSFC1(2)                                                           --------->HSFC1(2)                                                           --------->HSFB2a(1)                                                          --------->ARR11(3)                                                         <------ZmHOX2a(1)                                                       --------->ANAC58                         ----------->GT1               --------->ANAC58                        <-----                        --------->DAG2             --------->ANAC58                            ------         --------->HSFB2a(2)                       --------->ANAC58                        <---------GLK1(2) -------GLK1(1)         <---------TOE2(3)  <---------ATHB12<---------HSFB2a(1)     <---------TOE2(3) ----YAB1<---------HSFB2a(2)  ---------->DOF2    ---------->DOF2       <----------DOF2    <---------At4g35610 xxxxxxxx>smallRNA(fl3) <---------TOE1(3)--------->GLK1(1)<---------ARR11(3)       <---------TOE1(3)   atttctcgtttctgaaacccttgtataaggtagaaagagagagaaatcatccaaagcaaggaccttccagcgactttcagggtttaaggtttagcttctc  8635400                                                                            --------------->AtSPL3                                                                            <---------------AtSPL8                                           --------->At5g28300              --------------->AtSPL8                                          --------->TOE1(3)                 <---------------AtSPL3                                        <---------At5g28300                 --------->MYB59                                       <-----------GT1               <-----------------AGL1                                       --------->MYB52(1)           ------->TEIL<-------TEIL                                     <---------KAN4(2)            <---------ZAT14                                  --------->ANAC58                <---------ZAT18                            <-------GAMYB ------->GAMYB           --------->ZAT18                 <--        --------->GLK1(2)  ----------->GT1--------->TOE2(3)       --------->ZAT14             <------ZmHOX2a(1) ----HSFB2a(2)  <---------ANAC58  --------->ANAC58               --------->ALFIN1     ---------->DOF2 --->HSFB2a(2)  <---------ANAC58  --------->ANAC46        <-----------HVH21<---------------------WRI1   gactatggcgattctagggcttatcaagagggttacacgaataaccgtaaacaattcgagggtcagagtgtacccagtgaggtacttccaaaggaaggac  8635500                                                                     <---------MYB52(1)                                                                <---------WRKY18(1)                                                             --------->ATERF1(1)                                                            ------>NtERF2                                                           <---------DEAR3(1)                                                          --------->ATERF1(1)                                                          <------NtERF2                                                         <---------RAP2.3(1)                                                         <---------DEAR3(2)                                                         <---------ORA47(2)                                                         <---------ERF1                                                         <---------RRTF1(1)                                                        <---------At1g77200                                                        <---------RAP2.3(3)                                                        <---------RAP2.3(2)                                            ------>ZmHOX2a(1)<------NtERF2                          -                                            ================HOX2a_HOX2a                             -                                      <---------HSFC1(2)<---------DEAR3(1)                        <--                                      --------->HSFC1(2)<---------DREB2C(2)                       <--          <-----------ARR10           <---------At4g35610------>NtERF2                           ----   --------->ANAC58              <---------At4g35610  <-----------HVH21  <---------PCF2          ----   --------->ANAC58              --------->At4g35610 ------>ZmHOX2a(2)--------->ALFIN1           <--- ---------->DOF2            --------->ARR11(3)   <---------YAB1----------->HVH21           ------>ZmHOX2a(1) --------DOF2        --------->YAB1   --------->At4g35610<---------ATERF1(1)       <-----------GT1<--   ctttcaagcacaaatctattcaatggtgaagatgctgctaagcttcctgttctgatcgtcggcgctggaccggtgggactcgttttatccatccttctca  8635600        <-------TEIL                                                                         ------>ZmHOX2a(2)    --------->MYB59                                                                          ========    --------------->AtSPL8                                                             -------------- ----->MYB46(1)                                                                        <----------DOF2 ----->MYB83                                                                       --------->TGA1a -------------AGL15                                                                <---------O2 -------MYB111(2)     <---------ICU4                                               --------->ANAC46 ----->ANAC46         --------->ATHB51                                             --------->O2 ------------->AGL1  <---------YAB1    <---------At4g35610                         ===============bZIP_DOF --------------AGL1  --------->ICU4    --------->At4g35610 <---------At4g35610     --------->ANAC55(2) -------MYB46(2)   --------->YAB1      ----------->RAV1(2) --------->At4g35610   <---------DOF5.7(2)   ccaaactaggtacaatttttctcataatttctctaattttcatctgaagttttgagttttgagcttacattatcaagttaagttcacgtctttgatcgaa  8635700  Previous    Next  AGI:  At1g24330.1    Description:  armadillo/beta-catenin repeat family protein / U-box domain-containing family protein. similar to armadillo/beta-catenin repeat family protein / U-box domain-containing family protein [Arabidopsis thaliana] (TAIR:AT1G67530.1); similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G27910.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46633.1); similar to B1065G12.5 [Oryza sativa (japonica cultivar-group)] (GB:BAB90523.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79836.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain Zinc finger, RING/FYVE/PHD-ty Range:  from: 8631768    to: 8634824    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g24340.1    Description:  EMB2421 (EMBRYO DEFECTIVE 2421); monooxygenase. similar to unnamed protein product [Vitis vinifera] (GB:CAO46668.1); contains InterPro domain Aromatic-ring hydroxylase; (InterPro:IPR003042); contains InterPro domain Monooxygenase, FAD-binding; (InterPro:IPR002938) Range:  from: 8635198    to: 8638975    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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