Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   <---                                                                                                 ----                                                                                        --------->ATHB12                                                                                       <---------YAB1                 --------->ARR11(3)                                             <---------GLK1(2)----                 <---------ARR11(3)                                           <---------YAB1     <---       ----------->GT1                     <----------DOF2                    <---------ATHB12  -----   <------ZmHOX2a(1)                     <---------YAB1    --------->TOE2(3) <---------TOE1(2)  ----- ------>DOF2    --------->YAB1      --------->YAB1         --------->TOE1(3)------>ZmHOX2a(1)  <----- -ZmHOX2a(1)--------->ICU4   <------ZmHOX2a(1)     --------->GLK1(2)  <<<<<<<<<TBF1   <---------TOE1(2)   aaagaggaaatgtcaaaatgatatttccataggagtattcatcatctttagcgattctataccttaagcttcttcttcctatgattctcacgattagcac  8582000                            <<<<<<<<<MYB2  <----------DOF2          <-------GAMYB ----MYC3                 <---------ANAC46                                                          < --->MYC3                 <---------ANAC58        <-------GAMYB<---------LBD16               <------- --->MYC2                 <---------bZIP60(2)    <------MYB83 <---------LBD16                <------- ----MYC2                 <---------ANAC58       ----------->GT1--------->HSFB2a(2)          -------- ---->ANAC58    ------->GAMYB                    <---------MYB46(3)         <----------DOF2  -------- ---->ANAC58   --------->MYB46(3)                <------MYB46(1)<---------HSFB2a(2)         ------->TEIL ----TOE1(2)  --------->At4g35610               <---------AtMYB61  ---------->DOF2        <-------TEIL   gtttctttttggcatcaacagactcatggcgttgctcaaccttgggagggatggttatctcagcctcgggaaagaagacttttgaaccaagatgcagctt  8582100                         <---------ANAC58                   <---------MYB52(1)                                                           <----  --------->PCF2  <-------GAMYB                                                                 <---- ---------GLK1(1)--------->MYB52(2)               --------->ZAT6                                <---- --ZAT2          <---------MYB46(3)   <---------CCA1(2)           --------->MYB52(1)          <------ --At4g35610    <-------TEIL          ------>ZmHOX2a(1) ---------->DOF2                      <------- ->At4g35610<---------ICU4          ------>ZmHOX2a(2) <---------REM1(2)         --------->AHL20(2) ->ZAT2  --------->YAB1  <---------ANAC58 <----------DOF2       <---------MYB52(2)    <----------ID1   ggggttcccactaataagttcgttgattcttgcagtgatcctatctttctcaactctacaaagagaactaacaacatcagaaaaaaattcgacaagatgc  8582200         --------->REM1(2)      <---------ANAC46                                                 ------->TEIL   <-----------RAV1(1)                                              --------->ANAC58 -----ANAC46                                                        --------->ANAC58 -----ANAC58        <-------GAMYB           --------->YAB1     --------->YAB1 -----ANAC58        <---------At4g35610   ------>MYB83        <---------ATHB12      <---------ZAT18 ---YAB1<---------ANAC46          --------->AtMYB61          ------>MYB46(1)        --------->ZAT18 --ARR11(3)         --------->At4g35610   ------>MYB46(1)    ------>MYB83      ---------->DOF2   ttgttttgttgtgtagactcgcagttgaatttaagaccaaaaccaaacataacaatacatacctatcatcacgaacttcattcaagcgcattctaaactc  8582300                 --------->YAB1                                                                <-----                 <---------ICU4                                           ----------->RAV1(2)  ------                --------->ICU4                                       <---------ZAT18          -------             <-------TEIL                                   --------->ANAC46------>ZmHOX2a(1) ------>MYB46(1)         <---------TOE1(2)              <-------TEIL      --------->At4g35610                 ------>MYB83   gtcaaattttgcaggttcatcatgaaattcttccttcacagattcaatgtatgaaacagcatcagccatagtaggctcctgtgatacacttcttccaacc  8582400                                                           ------->TEIL                                                     <---------ICU4                          --------->GLK1(2)          -------->ATHB1                <----------DOF2                     ---------->DOF2           <------ZmHOX2a(2)             <----------DOF2 ----ATHB12  --------->ANAC46          ---------->DOF2<------------CBF       <---------DAG2 --->MYB46(3)--------->ANAC58       ----------->GT1  --------->ATHB12     <-----------GT1 ->P         --------->ANAC58     <---------ZAT14   <---------ATHB12    --------->YAB1     ----------   atggctaaaccctccaagaaaaaaaaagaatttgtgttcagtaaaacagatcaaatcattgaatctaaacctattaatactttttctttactataaagtc  8582500                   ------->TEIL              <---------AtLEC2              <---------ANAC58                 <------------CBF              <---------ANAC58              ----------->RAV1(1)              <---------ANAC46       --------->AHL20(2)            <-----------HVH21          <------------CBF          <---------ATHB12          ------------>CBF                    ---        --------->MYB46(3)     --------->TOE2(3)    --------->ARR14(2)                        <------ >DOF2 ------------>CBF        --------->TOE1(3)    <---------ARR14(2)                        -------   tcattactcaacaattgcatgtatttgtcaaaaccctaatcaaatacaacattggattcgaagcgtcaatgtcactctcaacgatatataagtcaaaaaa  8582600           --------->At4g35610                                            --------->At4g35610         <-----------RAV1(2)                --------->ARR11(3)            ----------->GT1       <-----------HVH21            ------->GAMYB                         --------->LBD16      --------->ANAC58             <---------MYB52(2)                    <---------MYB46(3)      --------->ANAC58             --------->MYB46(3)                   <---------LBD16     --------->SPL7            --------->At4g35610             --------->TOE2(3)                 ----     ------->TEIL             --------->RAP2.6(2)      <-----------GT1  --------->SPL7           ---- ------->DOF2               --------->At4g35610     --------->YAB1    <---------SPL7       <--------- ---AHL20(2)                <---------At4g35610     ----------->GT1   <-----------HVH21 ------------>CBF -->AHL20(2)              --------->ANAC46  <---------ARR11(3) --------->TOE1(3)      --------->GLK1(1)   ttaagcgaacgtcaggggaatttcatatacagcagcaacgagccaagaactcgatagtaactaaaccctaatcgtccggtgaatacagaattcaattgaa  8582700                                --------->ARR14(2)                             <---------------AGL15                             <---------MYB59                            <-----------------AGL3                            ----------------->AGL2                            ----------------->AGL3                            <-----------------AGL1                            ----------------->AGL1                            ----------------->AG                            <-----------------AG                            <-----------------AGL2              <---------MYB52(1)                           --------->MYB52(1)                  --------->TOE2(3)                          <<<<<<<<<GT-2                   <<<<<<<<<TBF1                          ----                          <-----------GT1              <-------TEIL                          --------                       --------->YAB1                 <---------ARR14(2)                     <-------                       <---------ICU4                 --------->ARR14(2)                     <-------      ---------->DOF2 <---------YAB1                --------->HSFB2a(1)                      -------- ----->ANAC58       --------->YAB1                  <---------HSFC1(2)             <---------TOE2(3) ----->ANAC58<---------ARR14(2) <---------ARR14(2)  --------->HSFC1(2)             <---------TOE1(3) ---CBF     <------ZmHOX2a(1)--------------->AGL15  <---------HSFB2a(1)        <----------DOF2   ----   cgaaaatcgaaagaggaaccaagtataattaccgaatttggcaaattagcaaggaggttcttcttcgttagagtaatggagctttaaggtttcttccaga  8582800                                                                                           --------->ANAC58                                                                                           --------->ANAC55(2)  --------->ARR14(2)                                                                       <---------ANAC55(2)  <---------ARR14(2)                                                                       --------->ANAC58 --------->GLK1(1)                                                                      <------ZmHOX2a(2) ----->ANAC58                                                                           ============= ->HSFB2a(2)                                                    <-----------GT1        <---------ARR11(3) --HSFB2a(2)                                              <---------DAG2        --------->TOE1(3) --HSFC1(1)                                               <----------DOF2       --------->TOE2(3) ->HSFC1(1)                ---------->ID1            <---------At4g35610      --------->GLK1(2) ----->ANAC58  --------->ATHB12                     <-----------GT1  --------->GLK1(2) --------->ARR11(3)   agcaaatccacagagactgatttgtttttgtttttttttggtcaaaagagtttttatctgctttttatacaaatctagagaaccttgaagatcaagtaat  8582900  Previous    Next  AGI:  At1g24220.1    Description:  paired amphipathic helix repeat-containing protein. similar to paired amphipathic helix repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G27240.1); similar to transcription co-repressor Sin3 [Xenopus laevis] (GB:NP_001081937.1); contains InterPro domain Paired amphipathic helix; (InterPro:IPR003822) Range:  from: 8578647    to: 8582402    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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