Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     --------->DAG2                                                 ---------->DOF2           <----------DOF2                                               --------->YAB1           ===========================HOX2a_HOX2a                       --------->ARR14(2)     <---------ATHB12        --------->ARR11(3)                   --------->HSFB2a(2)  <---------ZAT14           <----------DOF2                   <---------HSFB2a(2)  --------->ZAT14        <---------TOE1(2)    <---------TOE1(3)  <---------ARR14(2)     <<<<<<<<<ARR2    ------->TEIL--------------->AGL15 ------>WOX13(1)   --------->LBD16      <---------ZAT18     <---------ANAC58                <------ZmHOX2a(1) --->ANAC58  --------->At4g35610      --------->ANAC46      <---------ANAC58    ---------->DOF2 --->ANAC58--------->YAB1           <---------ALFIN1     <----------DOF2------>ZmHOX2a(2)   =========   caatctaagcttatcatcttccgagaattcacagagacacactgcacaatcaaaaggctctttcgtacctttgatctctttgtaaagaaacacaggaaga  8485600                            --------->YAB1                                         --------->GLK1(2)                    <---------AGP1                  --------->At4g35610          <---------HSFB2a(1)                 --------->HSFB2a(2)                <---------At4g35610          --------->HSFC1(2)                 <---------HSFB2a(2)            <---------REM1(1)                <---------HSFC1(2)                ------>ZmHOX2a(2)        XXXXXXXXXXXXXXXXXXXX>MIR2937            --------->HSFB2a(1)              <---------ARR11(3)      ---------->DOF2               --------->MYB52(1)            ---              --------->ARR11(3)  <---------At4g35610      --------------------->WRI1<---------LBD16<      ---------->DOF2       --------->ATHB12 <---------MYB46(3)<--------P    ----------->GT1  ------- ======================HOX2a_HOX2a--------->At4g35610     <----------DOF2   ----------->GT1  <-------   gcatcgattaaagcttgatctagacctgaatcatggagatgaaagagctgttgaagctgtctttggtaagtatcggagtcggaaaattctgggttttgat  8485700        <------MYB46(1)        <------MYB83       <---------AtMYB61                                  --------->MYB46(3)       --------->MYB55(2)                                ------>MYB83       --------->MYB46(2)                                ------>MYB46(1)                  --------->ANAC55(2)      <---------MYB55(1)                  --------->ANAC55(2)                             <---------ANAC46     <---------MYB52(1)               <----------DOF2 --------->MYB46(3)                  <---------ANAC55(2)  <-------TEIL                     --------------->AGL15==============================RAV <---------TOE2(3) --------->ARR14(1)           <----------DOF2      ----------->HVH21                     <---------LBD16 -------->ARR10            --------->ARR11(3)   <-----------ARR10                       --------->MYB52(1) ---------GLK1(2)   --------->DAG2 <---------------AGL15----------->RAV1(1) --------->At4g35610 -->ATHB12   ----------->TGA1------>ZmHOX2a(2)  <---------ARR11(3)          <---------At4g35610 --YAB1<---------MYB46(3)  <---------ARR11(3)   --------->ARR11(3)        <-----------RAV1(2)   tagattcgtttggtgatgacgaaaggtttgatcttttcttctttaagtaatatctgaccaacaaatgtagaatgctacagatgaagaagattacggataa  8485800                                                                               <---------YAB1                                                                              <---------TOE2(3)                                      <-----------GT1                  <---------MYB52(1)                                   <--------HAHB4       >>>>>>>>>TBF1 <-------GAMYB                          <----------DOF2    --------->LBD16         ----------->GT1        <--------                         <---------ANAC58  <---------LBD16           <---------MYB46(3)   --------->ATHB12                  --------->ATHB12 <---------ICU4    >>>>>>>>>TBF1   <------MYB83     <XXXXXXXXXXXXXX                 --------->ICU4   --------->ICU4 <------ZmHOX2a(1)   <------MYB46(1)<-----------RAV1(2)      --------->YAB1     <---------ANAC58 --------->MYB52(1)         <---------DEAR3(2)   <---------MYB46(3)     --------->ICU4 <---------bZIP60(2) --------->MYB46(3) >>>>>>>>>TBF1   <---------WOX13(1)   gagaacgatgatgaagagaatgatggggcttattcgattattaccaccggaggaagaagaagaagaagagtcggttaattgatgattcagggtgattgga  8485900                                                             ------>ZmHOX2a(1)                                                         <---------ARR14(2)                                                      <---------YAB1                                                    --------->YAB1                                                    <---------ICU4                                                   --------->ICU4      --------->At4g35610                  <---------At4g35610   --------->At4g35610                     --------->ZAT2------->TEIL <------ZmHOX2a(1)                         --------->At4g35610  ------>ZmHOX2a(1)           >>>>>>>>>TBF1 -WOX13(1)         --------->CCA1(2)       <---------ZAT2--------->ARR14(2)                *TSS   >>> XXXXXXMIR2934  ----------->ARR10---------->ID1   <---------KAN4(2)        <---------AHL20(2)  >>>>>>   gaaggagcagaagaaggcgagatttgattcaagttgtcgtttttgagctgggaataatgaatcctcctctcagacattttttttttttgatgaagaagaa  8486000                                             --------->YAB1                               ----------- >>>>>>TBF1                <---------ALFIN1 <---------ATHB12     ----------->GT1     <----------DOF2 >>>TBF1         <-----------GT1       --------->TOE2(3)  ---------->DOF2        ----------->HVH21 --   gaagaacagagacaccatttaacttgacaacactctctaattcttaatcataaaccctcaaaaagaaatgtaaattctaatctctgactttgtagtaaaa  8486100                                                                                                <----                                                                                                -----                                                                                                -----                                                                                                <----                                                                                                -----                              -------->HAHB4                                                    -----                              <---------ICU4                                                   <-----                              --------->ATHB12                                                 ------                      --------->At4g35610                                                      <-----             <---------ARR14(2) <---------WOX13(1)                                          <--------        <---------ANAC58     <---------ATHB12       --------->MYB46(3)                      <--------        <---------ANAC46     --------->ICU4<---------ARR14(2)                               ---------   <---------REM1(1) --------->GLK1(2)     --------->ARR14(2)                   --------->TOE2(3) >GT1   <---------ANAC58     <---------YAB1--------->ARR11(3)            <---------YAB1    --------->AHL20(2) ------->AHL20(2)   <---------GLK1(2)      <---------GLK1(2)      <----------DOF2          <---------AHL20(2)   aaaaaatgtagcgagtattttggaatctgaaatgattgctaaacagattttggaacgaccagagagagctatattgtcattacattagaaaattttaatt  8486200 ----------->GT1 -----ICU4 --->HAHB4 ---->ATHB51 -----AHL20(2)                                      <---------AHL20(2) ---->ATHB12                          ------>MYB46(1)         <---------ARR11(3)                  --- --->ATHB1                            ------>MYB83 <---------AHL20(2)                           ----- ----YAB1                            ----------->RAV1(1)      --------->ARR11(3)         --------->AHL20(2) --->ICU4                      <-----------HVH21   --------->AHL20(2)             --------->AHL20(2) ----ATHB51                   <------MYB46(1)  <---------AHL20(2)            <---------ARR11(3) <---- -AHL20(2)                    <------MYB83    --------->AHL20(2)             --------->ARR11(3) <---- -YAB1                       --------->MYB59  <---------AHL20(2)            --------->YAB1      <---- >AHL20(2)     <-----------HVH21   --------->MYB46(3)         --------->GLK1(2)   <---------AHL20(2)   attgagttattaagcagggtcagtctctaattaggtcaccaacattttttaaatttttttgaaaaatctattgaaaaatgatattaaaaaaaaaaatggt  8486300          <---------ANAC58       --------->ANAC58          <---------ANAC58   ------>NtERF2                                                --------->AHL20(2)        <---------YAB1    --------->At4g35610                                       --------->YAB1 --------->TCP20         <-----------RAV1(1)                         --------->ARR14(2)   <---------AHL20(2) <---------PCF2         ------>ZmHOX2a(2)                            <---------ARR14(2)   --------->AHL20(1) ------>ALFIN1         <------ZmHOX2a(2)                           --------->LBD16  --------->TOE2(3) ---->ALFIN1          <---------ARR14(2)                         ==================================== -----ANAC58          --------->ARR11(3)                         ----------------->AG     <---------AHL20(1) -----ANAC46          --------->ARR14(2)                       <-----------GT1   <----------DOF2 -----ANAC58      <---------LBD16--------->ANAC58         <---------TOE2(3)    ---------->ID1   gtggagccctatgcttgattcagggatctggtgcctagcaatttcgaaaaatatagaattaagtttttccgaatatgttttgtctttcttaatttattgt  8486400                                            <------MYB83                                            <------MYB46(1)                                           --------->MYB59                   --------->ZAT6          --------->MYB111(1)                 -------->HAHB4           <---------MYB55(1)                 --------->YAB1           <--------P                             --------->HSFB2a(1)                --------->ICU4          <---------MYB46(3)                       <---------HSFB2a(1)              --------->YAB1           <---------ZAT6                            <---------KAN4(1)           ----------->GT1        <<<<<<<<<<<<<<<<<LFY                           --------->MYB46(3)      ---------->DOF2       <---------AHL20(2)                                   --------->KAN4(1)    --------------->AGL15   --------->AHL20(2)          <-------GAMYB------->GAMYB          <--------    <---------------AGL15  --------->AHL20(2)          <---------MYB46(3)       <---------KAN4(2) ===================MADS_MADS     >>>>>>>>>>>>>>>>>LFY ----------->GT1   --------->MYB52(1) ---------   agttatctaaaaggagtaataatactacatttaattatccagtggtaggtctcaaggtcgttaaataacaacgaaaaacgggaacaatccacaataatcg  8486500  Previous    Next  AGI:  At1g23980.1    Description:  zinc finger (C3HC4-type RING finger) family protein. Identical to RING-H2 finger protein ATL1D (ATL1D) [Arabidopsis Thaliana] (GB:Q8GW38;GB:Q9LR95); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G40250.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80445.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 8484692    to: 8485991    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version