Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          --------->ARR14(2)                                                       <<<<                        <---------ARR14(2)                                                 <xxxxxxxxx                 <xxxxxxxxxxxxxxxxsmallRNA(i)                                            <---------YAB1                ------>NtERF2                                                       xxxxxxxxxxxxxxxx>smallRNA(i)               --------->RAP2.3(3)                                                 --------->ZAT18<xx               --------->DREB2C(2)                                                 xxxxxxxxxxxxxxxxxx               --------->DEAR3(1)                                                  xxxxxxxxxxxxxxxxxx              --------->ATERF1(1)                                                  <-------TEIL <----              --------->RAP2.3(1)                                                 xxxxxxxxxxxxxxxxxxx              <------NtERF2                                                      xxxxxxxxxxxxxxxxxxxx              --------->ORA47(2)                                                <xxxxxxxxxxxxxxxxxxxx             <---------ATERF1(1)                                              xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             ------>NtERF2<---------LBD16                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             --------->At4g35610    --------->ANAC58                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             <---------At4g35610    --------->ANAC46                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)             --------->LBD16--------->LBD16     <------MYB83             ----------->HVH21 xxxxxxxxxx        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <------MYB46(1)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      ------>ZmHOX2a(1)<---------GLK1(1) --------->ANAC58               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <---------GLK1(1)     --------->GLK1(1) --------->ANAC58               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --->AtMYB61<---------ATERF1(2)     --------->ANAC58                   <----------DOF2  <xxxxxxxxxxxx -->MYB46(3)--------->ATERF1(2)   ---------->DOF2   --------->MYB52(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) >RAP2.6(2) --------->DEAR3(1)<---------ANAC46 --------->MYB59     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   tcgatttcctcatgccgccgacttgaaatccggcgtaaaagccacgaattaggtcagtttcttctcatatttcctttgacattggtgcattgtgatttta  8453800 <<<<<RAP2.2 xxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                             ---------->DOF2 xxxxx>smallRNA(si3)                                     <------MYB46(1)                            < xxxxx>smallRNA(le3)                                     <------MYB83                             --- -----TOE2(3)                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       xxxx xxx>smallRNA(le3)          --------->ZAT2           --------->ATHB12                         <------ xxx>smallRNA(le3)          <---------ZAT2          --------->ICU4                 xxxxxxxxxxxxxxxxxx xxxsmallRNA(fl3)  <---------AHL20(2)               <---------YAB1   ---------->DOF2     <--------P-- xxxxxxxxxxxx>smallRNA(si3) --------->At4g35610    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)<---------TOE2(3) xxxxsmallRNA(s)   --------->AHL20(2)    <---------YAB1<---------WOX13(1)     xxxxxxxxxxxxxxxxxxxxxxx   gattgggattttgaattctatataattcccagctcgattcaatttgatagtttgatgattggtttgcaaagtaaagagtaatcgattagaggttgccgaa  8453900          --------->ALFIN1        <---------At4g35610       <---------TOE2(3)                                                     --------->ALFIN1  --------->MYB52(2)                                                       --------->CCA1(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                    --------->ARR14(2) ---------MYB52(1)                                                        --------->ARR11(1) -------->GT1                                                             <---------ARR14(2) xxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                      <---------TOE2(3) ---RAP2.6(3)                            <-------GAMYB   --------->LBD16  --------->ARR11(3) xxxxx>smallRNA(se3)         <------MYB83--------->At4g35610 --------->GLK1(1)  <---------ANAC46 ------->TOE2(3)             <------MYB46(1)        <---------GLK1(1) ---------->DOF2 >smallRNA(le3)   ---------->DOF2        <---------At4g35610<---------ARR11(3)<---------LBD16   acgttatttgaggtgatgagcaaaggaatgtaggttgaatgtgagttgaatttgaattccgagatttcatattaaagatttggggggtttgtgtttgcaa  8454000                                                                                                    <                                                                                                   <-                                                                                             <-------                                                                                             <-------                                                                            <---------ANAC46 --------                                                                         xxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                              <---------DOF5.7(2)            --------                                                              --------->MYB52(1)           <xxxxxxxxx                                                 <---------ATHB12      <------MYB83xxxxxxxxxxxxxxxx>smallRNA(s)                                               --------->GLK1(1)      --------->MYB59     <----------ID1                                               <---------GLK1(1)      <---------TOE2(3)   xxxxxxxxxxx           --------->WOX13(1)          <---------YAB1      ----------->GT1<-------TEIL   --------->ZAT18       <-----------GT1                 <---------TOE2(3)=============================================  <---------TOE2(3)  <---------TOE2(3)<-----------GT1   ---------->DOF2<------MYB46(1)  --------->ALFIN1   agtttagattaaccaattagtttaacgaataggtatgtattaacattggaaatcaattgaaaggtaacgaattaggttcagtagaatcgagtgcgacgag  8454100                                                                                                    <                                                                                                    <                                                                                                  <--  --------->ATHB12                                                                                === ---------WOX13(1)                                                                                --- -----------CBF                                                                                  ---- --TGA1a                                             <---------WOX13(1)                          ---- --O2                                     --------->AHL20(2)                               >>>>>>>>>TBF1 ->TGA1a       --------->YAB1 <---------ANAC46      <------------CBF                     *TSS    ---- ->O2         <---------YAB1<-------MYC3  <---------AHL20(2)                    ===================== xxxxxxxsmallRNA(i)     <-------TEIL   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     <------ZmHOX2a(1)<--- xxxxxxxxxxxx>smallRNA(le3) ------->MYC3 --------->YAB1                      <-----------RAV1(2) <--- ==bZIP_DOF  <---------TOE2(2)----------->GT1      --------->ATHB12          <---------LBD16   ------   agattgatttcaacgtatgataagagtacatgtggtataactattaaaatgtttgattggagttgaactggttgtattttcaggagcgatgaagaagaag  8454200       <---------TOE1(3)       <---------TOE2(3)  --------->ZAT6  --------->ANAC46 xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ---------ALFIN1 ----ZmHOX2a(2) ==================================HOX2a_HOX2a ------>CCA1(2)                                          <------MYB83 ----->ARR14(2)                                          ----------->GT1 ----->AGP1<-------TEIL                                  <------MYB46(1) ----->ARR11(3)              <---------ARR14(2)         ----------->GT1 ====HOX2a_HOX2a             --------->ARR14(2)        <---------WOX13(1) ------ARR11(3)             <------ZmHOX2a(1)   --------->ATHB12   <-----------GT1 ------ARR14(2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->ICU4 ----->ARR10     <---------YAB1        <---------ZAT14<---------ARR14(2)   atccacactaaggtacattttgattttggaggatactattctgaagtgaatgagtggattggtaaaaattcactatatgctatatcgtttaagacgagta  8454300                                                   <---------ANAC58                                                   <---------YAB1                                                   <---------ANAC58                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                    <------ZmHOX2a(2)        ------->TEIL                                   --------->ARR11(3)     <---------REM1(1)                                   <---------ARR11(3) <---------WOX13(1)                         ----                          --------->At4g35610 <---------HSFB2a(1)                                <---                          <---------At4g35610 --------->HSFB2a(1)                               <----                          <-------GAMYB       --------->HSFC1(2)                                -----                         --------->MYB52(2)   <---------HSFC1(2)<----------DOF2xxxxxxxxxxxxxxxx>smallRNA(i)                         <---------MYB46(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          --------->GLK1(2)      ----------->ARR10<---------MYB52(1)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <-----------GT1   gtttggagaagattagctattcgatgttagttgacaagatcatgaagaaggttgcgattgatgaagcttttgtcaagttgaaactgagttacaatctgtc  8454400                                                                                            ---------                                                                                           ------->MYC2                                                                                           <-------MYC3                                                                                           <-------MYC2                                                                                           ------->MYC3                                                                                        <---------AtLEC2                 --------->AHL20(1)                                                     <---------ANAC58                 --------->ARR11(3)                                                     <---------ANAC58        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                --------->At4g35610 ------>ZmHOX2a(1)      <------ZmHOX2a(1)                                  --------->GLK1(2)   <---------GLK1(1) ----------->AGL15                                       --------->ARR14(2)  --------->GLK1(1) ------------AGL15                <------ZmHOX2a(1)      <---------ARR14(2) --------->ARR14(2) -------------AGL2              <---------TOE2(3)       <---------GLK1(2)   <---------GLK1(2) ------------>AGL3       <---------At4g35610       <-----------GT1          <---------ARR14(2)   <---   taaatttaggagagagacatatattgtagatgatgaggatgtcttcatatttttaacagaatctgatgaagagagtcggattcctgttttgcatgtggag  8454500                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                 <---------ANAC46                                                               <------MYB83                                                               ----------->GT1                                                               <------MYB46(1)                                                              <---------AtMYB61                                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                            --------->LBD16   <---------MYB46(3)                                          <---------LBD16    <---------MYB52(1)                                       <---------ZAT14      <-------GAMYB                                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                 --------->HSFB2a(1)        <---------At4g35610                                 <---------HSFC1(2)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                 <---------HSFB2a(1)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                 --------->HSFC1(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                 xxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------AHL20(2)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------AHL20(2)          ----------->GT1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <------ZmHOX2a(1) --------->AHL20(2)    <------ZmHOX2a(1) ------->TEIL xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) >ALFIN1     <------ZmHOX2a(1)<------ZmHOX2a(1)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) ---ZmHOX2a(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------AHL20(2)   gaattaaatggtataggagttgagaggagagaggaaatttctgtaccggagcgtcgaagttcagttggtgtaaatgtaatagaggatgatgttttaaatg  8454600                                                                      ------>ZmHOX2a(2)                                                                     <------ZmHOX2a(2)                                                                    <---------ARR11(3)                                                                    --------->ARR11(3)                                                                    --------->ARR14(2)                                                                    <---------ARR14(2)                                                                   --------->GLK1(1)                             <---------ICU4                   <-------TEIL                             --------->YAB1                   <---------LBD16                            --------->ICU4                    --------->SPL7                       --------->CCA1(2)                    <---------SPL7                      <---------ARR14(2) --------->ATHB12  <------MYB46(1)                      --------->ARR14(2) <--------ATHB1    <------MYB83                   <---------WOX13(1)   <---------YAB1    <---------TOE1(2)                         -                 --------->ATHB12 <---------ANAC46        <---------------AtSPL3             --------              <---------AtLEC2 --------->ICU4             --------->MYB46(2)       --------->DAG2   -             <-------TEIL --------->YAB1--------->ICU4    --------->MYB59      <---------ETT(2)    <-         --------->ALFIN1<---------YAB1<---------WOX13(1) --------->MYB111(1)  --------->ETT(2)------        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)              <---------------AtSPL8 ---------->DOF2  <--      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               <--------P<---------GLK1(1)       xxxxxxxxxx   aagtatgtgagatggtgcatgatggatatgataatgatgtgaatgattgtgagaatgtagtaggtacggagatcgtggctgtcgaaaggccgatggaaag  8454700  Previous    Next  AGI:  At1g23920.1    Description:  transposable element gene. Mutator-like transposase family, has a 3.6e-77 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain) Range:  from: 8454189    to: 8456555    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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