Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                --------->ANAC58              --------->ANAC58              --------->ANAC46     --------->LBD16                              <--------ATHB1     ------>ZmHOX2a(1)                            --------->YAB1                                    -   ----------->RAV1(2) ----------->GT1           <---------ATHB51                                 <--   ==========================RAV             <---------ATHB12                                    ---- ----------DOF2  ----------->RAV1(1)        ------>MYB46(1)        --------->At5g28300         <----- -->MYB46(3)  --------->ANAC55(1)           ------>MYB83          ----------->GT1            -------- ->ANAC58  --------->ARR14(2)             <---------MYB59 <---------ICU4                    --------- ->ANAC58  <---------ARR14(2)         <---------ATHB12    --------->YAB1             --------->YAB1--   ttctttcctgaagtatacgccacaagagtaaaacttttcaatgaccaaacaataatacaaacattacatggtaactaagaggtctaatgagaagaacact  8428900            <---------YAB1  <------ZmHOX2a(2) ------>GAMYB -------TOE2(3)                                                                 -------->P ----->MYB52(1)<---------WOX13(1)                                 <------ZmHOX2a(1) ----MYB52(2)--------->ATHB12        <-----------TGA1          <-----------RAV1(2) ->ZAT6   --------->At4g35610    <----------DOF2         <---------ANAC58    --------->ZAT2 >ZAT18   <---------At4g35610<---------CCA1(2)           <---------ANAC58    --------->At4g35610 ------->MYB46(3)      ---------->DOF2              <------ZmHOX2a(1)       --------->ANAC46       <-   aacgatccaatgcgctgattgcatccaaagcatctctttcgtcatcgaactcgaggaatgcgtagccaggaggtctacgagctacccagacactgcgatt  8429000              --------->ICU4            --------->YAB1     <-------TEIL         <---------ANAC46    --------->CCA1(2)     <---------ANAC58            <------ZmHOX2a(1) <---------TOE1(3)        <---------ANAC58         --------->CCA1(2) <---------YAB1<---------ICU4               --------->ZAT14 <---------ANAC58 <---------TOE2(3)    --------->SPL7        <---------ZAT14 <---------ANAC58 ----------GT1<---------YAB1            <---------------AtSPL8  <---------ANAC46   tttaagattcagagtcataattcgtatggcttgaaacaaaattgagtacagagataggacttacttgcgaagaacaccgaaggccttgaattcgtcttcg  8429100                    <---------PCF2                    --------->TCP20                    --------->TCP15(1)                  <---------MYB46(3)                 --------->ALFIN1                <-------MYC3                ------->MYC3               <---------O2               <---------ANAC58               <---------TGA1a               <---------ANAC46               --------->TGA1a               ===================================================bZIP_DOF               <---------ANAC58               --------->ALFIN1               --------->O2             <---------ANAC58             <---------ANAC46             <---------bZIP60(2)             <---------TGA1a    ------>NtERF2               <------ZmHOX2a(2)             <---------ANAC58   ----------->RAV1(1)        --------->ARR11(3)             <---------O2      <---------ETT(1)            <---------ARR11(3)          ----------->TGA1     --------->ANAC46          --------->ICU4          ----------->HVH21   <---------HSFB2a(2)      ---------->DOF2       ---------->DOF2         <-----------HVH21--------->ARR14(2) <-----------TGA1              --------->ANAC58    ===================bZIP_DOF--------->LBD16   <-----------RAV1(1)       --------->ANAC58    =====================bZIP_DOF            <-----------HVH21      ------->TEIL    <----------DOF2<---------DEAR3(2)       --------->bZIP60(2)--------->At4g35610  --------->GLK1(2)   agttctctttcggtgacgcgtgggtccaaattcccgacataaaccctcgtcatgttgcaaagatcagttgaatctgaacgaaagagaatcgaattttgtg  8429200                                                                 <---------ZAT2                       <---------At5g28300          --------->GLK1(2)                       ---------->DOF2             <---------GLK1(2)  ---------->DOF2                   <---------ICU4             --------->TOE1(2)  <---------At4g35610                --------->YAB1               ----------->RAV1(2) --------->ZAT2            ----------->GT1             --------->ANAC58         --------->At4g35610  <---------TOE1(3)         --------->GLK1(1)              --------->ANAC58      ------>ZmHOX2a(1)       <---------TOE2(3)         <---------GLK1(1)      ----------->GT1  ----------->ARR10  --------->At4g35610   <-------TEIL   aagaaatatggatatcgataatagttacagcgagtagttaacaaggtacctgagattcttggtcctgagcagcgaagcgggatgttttagggttcagact  8429300                                         <---------AHL20(2)                      <---------AHL20(2)                                        --------->AHL20(2)                    --------->AHL20(2)                                       <---------YAB1                         <---------AHL20(1)                                      --------->AHL20(2)         --------->AHL20(1)           <------                                     <---------ICU4              --------->AHL20(2)          --------                                     <--------HAHB4              <---------AHL20(2)          <-------           <------ZmHOX2a(1)        --------->ICU4              --------->AHL20(2)     <------MYB83        *TSS---------->DOF2         <---------YAB1      ----------->GT1       --------->AHL20(1)       <---------ANAC46          <---------AHL20(2)    --------->DAG2   --------->YAB1 <------MYB46(1)    <---------DEAR3(1)      <---------ARR11(3)        ---------->DOF2 <-----------GT1 --------->MYB59   cagactacggcgaggaaagagagtaaccaagttatttcattattatatgaaaactgaaaagtaaaaaaaaattaacatcatatattatttggtcatttat  8429400                                              ---------->DOF2                                      --                                       --------->YAB1                                             ---                                      <-------TEIL                                               <---                                  --------->ARR14(2)                                             <--- ---AHL20(2)                      <---------ARR11(3)                        ---------->ARF1     ----- ->AHL20(2)    <---------MYB52(1) <---------ARR14(2)                  --------->ZAT6            <---- --AHL20(2)--------->PCF5        <---------CCA1(2)          --------->AtMYB61                 -------   tagttatttcatggtcccttatttttcggtaatccatatattcataaacaaagttttagcgaccaaaatgtaagactagtctcccatagtcgattagtta  8429500   ---------->DOF2 ------->TOE2(3) -------->GT1             --------->ARR14(2) ------TOE2(3)            <---------ARR14(2)               ---------->DOF2 ------TOE1(3)            <---------GLK1(2)      <----------DOF2 ---->MYB52(1)     ---------->DOF2            --------->ARR11(3)                --------->HSFB2a(2) -----DOF5.7(2)  ----------->HVH21            <---------ARR11(3)  --------->AtLEC2                <-- -->DOF5.7(2) <---------TOE2(3)       --------->AtLEC2 ----------->RAV1(1)      <---------HSFB2a(2)<-   acgtaaaaagagaattgaggtgaaagcggattttgaaactatgcaaaacatctttgacaacaaaagttatgcaaacatgtttctagagtttgatgtctaa  8429600           <---------bZIP60(1)           <---------ANAC55(2)           --------->O2           <---------O2           <---------ANAC58           --------->ANAC55(2)           <---------ANAC46           --------->TGA1a           <---------ANAC58           <---------TGA1a                                                                         <-           --------->bZIP60(1)                                                                    <--        ----------->HVH21                                                                         <--  --------->At5g28300                                                                             <-- <---------ZAT6                                               ----------->GT1                  <----- ---------GT1  <---------GLK1(2)                          <----------DOF2                     <------ --------At5g28300                  --------->MYB52(1)   <---------DAG2                       <------   ttactgtaacttgacgtgattctcagtctgaaaaaaactaatgggcctaaaacccataaccttttggttaaaattttaaaaatatgagcaagtttcagtt  8429700 ---------DOF2 -------ANAC58 -------ANAC58            <<<<<<<<<MYB2             ------->TEIL    --------------->AGL15 -------ANAC46         <---------AtMYB61            <---------ARR14(2)                 <---------AHL20(2) ----MYB52(1)     <------MYB46(1)         <---------ICU4    <---------AHL20(2)        --------->AHL20(2) ---At4g35610     <------MYB83    <---------DAG2    --------->ARR14(2)          <---------At4g35610 -GAMYB          <---------AtMYB61<----------DOF2  <---------CCA1(2)<---------------AGL15   gcttaatggcccatatgagttggttttggttttcaacttttgcatcagtacttgtatcttcttaaattttcaaaatatagtaggctgattaaatctaagt  8429800  Previous    Next  AGI:  At1g23860.1    Description:  SRZ-21. similar to SRZ-22 (SERINE/ARGININE-RICH 22) [Arabidopsis thaliana] (TAIR:AT4G31580.2); similar to SRZ-22 (SERINE/ARGININE-RICH 22) [Arabidopsis thaliana] (TAIR:AT4G31580.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40907.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 8427345    to: 8429308    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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