Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 --------->HSFB2a(2)                                               <---------HSFB2a(2)                                             --------->SPL1(2)                                             --------->SPL7                                            <---------SPL1(1)                      <---------MYB46(3)    --------->SPL1(1)                     --------->ALFIN1      <---------RAP2.6(3)                     <---------AtMYB61     <---------SPL7                     <---------ANAC46      <---------SPL1(2)                                ---------                   <---------MYB46(3)     <---------ANAC58                                 <---------ARR14(2)                  <---------DEAR3(1)      <---------ANAC58 <---------ANAC46                <---------GLK1(2)                  <---------AtMYB61      --------------->AtSPL3                            --------->ARR14(2)                  --------->ALFIN1       <---------------AtSPL3                          ----------->ARR10               <---------AtMYB61        ------>NtERF2      ----------->GT1              --------->YAB1             <-----------RAV1(1)        <------------------SPL14             --------->ANAC58  <-------TEIL <-----------RAV1(1)     ------------------>SPL14              --------->ANAC58   aagatgcagagactattgtggtggtggtgaagaggtctatgaggccgtacgggaacaagtagagtagaaatgtctggataagcaatggaatcagattctc  8426800                 <------ZmHOX2a(1)       --------->HSFC1(2)       <---------HSFC1(2)       <---------HSFB2a(1)       --------->HSFB2a(1)      --------->ANAC58                               <---------TOE1(1)      --------->ANAC58                            <---------SPL7                            ---------  --------->ANAC58                               --------->ETT(2)                       <---------ANAC46  --------->ANAC58   --------->TOE1(2)      <-------GAMYB                          <---------ANAC46 >GLK1(2)--------->ARR11(3)          <---------ATHB12<---------TOE2(1)           <---------MYB46(3)   caagacggaagcatcttgaggaacgtagtagtaatcccaattagtgagttgtcgaacgaggtattgagaagcgagtgagacagtggtttggagtgaaagc  8426900                                                                                      <--------------                                                                                      ---------------                                                                                      ===============                     --------->ALFIN1                                                <---------ANAC58                 ---------->DOF2                                                     <---------ANAC58          --------->ANAC58                                                           <---------ANAC46          --------->ANAC58                                  <---------TOE2(3) <----------DOF2      --------->ARR11(3)                                 <---------WOX13(1) --------->HSFC1(2)      <---------ARR11(3)                    <------ZmHOX2a(1)               <---------HSFC1(2) ->DOF2<------ZmHOX2a(2)          ---------->DOF2<----------ID1 <-----------GT1 <-----------RAV1(1)   tcgaagaagatcaagaaacaaaagagggggagagagcaaaggaagaggaagagaacaagattgatgttaccacatagaagctttgttgctcgtttgagta  8427000                         --------->YAB1                    ------>ZmHOX2a(1)                                                  <---------ZAT14                   --------->TOE2(3)                                                   --------->ZAT14                 ------>ZmHOX2a(1)                                                ------>ZmHOX2a(2)               ------>ZmHOX2a(2)                                                 <------ZmHOX2a(2)              =============HOX2a_HOX2a                                          --------->ARR14(2)              <------ZmHOX2a(2)                                                 <---------ARR14(2)             --------->AGP1                                             <---------------AtSPL3             <---------ARR11(3)                                         <---------------AtSPL8             --------->ARR11(3)                                   --------->DAG2--------->AGP1             <---------ARR14(2)                                  ---------->DOF2--------->ARR11(3)             --------->ARR14(2)                            ---------->DOF2      <---------AGP1 -AGL15      <---------GLK1(2)                           <---------REM1(2)<---------ZAT14 >AGL15    ----------->ARR10       <----------DOF2    <---------------AGL15 <---------ZAT14    <----- =====================================================================MADS_MADS <---------ARR11(3)  -   tgttgatgaaacctagatcctcctcaatcttcatcttctttcacagttctcttcttctctacaaagaaaaagggagagtacagatctactacagtttttt  8427100                                  --------->bZIP60(1)                                  <---------ANAC46                                  <---------ANAC55(2)                                 <---------TOE2(3)                                <---------DOF5.7(2)                                          --------                               --------->WRKY12                    ------>MYB46(1) ------>MYB83    <-                              --------->DOF5.7(2)                  ------>MYB83    ------>MYB46(1) --                            <---------ANAC46             --------->GLK1(2)       <---------------AGL15                           <---------TOE2(3)             --------->ARR14(2)      --------------->AGL15                         ----------->HVH21               <---------ARR14(2)     ----------------->AG     --------->ICU4     <---------WOX13(1)            --------->MYB46(3)        ----------------->AGL3 ----AHL20(2)         --------->ATHB12 --------->ICU4------>MYB83<---------MYB59----------------->AGL2 ---------->GT1 <---------MYB52(1)--------->ANAC55(2)------>MYB46(1)     --------->TOE2(3) ----------   attcgtaaatatggagtcgtttcttcattgacgttgacgtaagaattggtataccaacaaatctgaaccaaattgcctcaaaaccaaatttagaaaagta  8427200                     <------NtERF2                  ------>NtERF2                  <------NtERF2                  --------->At4g35610                 <---------RAP2.3(1)                <---------RAP2.3(3)                <---------RAP2.3(2)                <---------ANAC58                <---------DREB2C(2)                <---------ANAC46                <---------RAP2.6(2)                --------->ATERF1(1)                <---------RRTF1(2)                <---------ATERF1(2)                <---------DEAR3(1)                --------->ATERF1(2)                <---------ANAC58               --------->RAP2.6(3)               --------->ATERF1(1)             --------->ALFIN1                                 ---------->DOF2            ------->MYC3 >>>>>>>>>TBF1            <------------CBF                   <---------ICU4 --->GT1    <-------MYC3*TSS                     --------->ATHB12                    --------->YAB1 --------AHL20(2)<---------SPL7                 --------->AHL20(2)                  <---------ATHB12 ------->AHL20(2)------>NtERF2                  <---------AHL20(2)--------->YAB1  ------>MYB83 ------ >DOF2     <-----------RAV1(1)       ---------->DOF2     ---------->DOF2          ------>MYB46(1)   ttaaaatgaaaacatgtggcggccgaagaagaacagattaaaagtcgagattaattgggaaaagaaaagcataagtgggaaaccaaatcatgaacacaaa  8427300                                                                                           ----------                                                                                     --------->MYB46(3)                                                               <---------TOE2(3)    ------>MYB46(1)                                                             <---------AHL20(2)     ------>MYB83                                           ----------------->AGL3                  --------->MYB52(1)                      --------->ANAC58     <-----------------AGL3                  ----------->RAV1(1)                      --------->ANAC46 <---------HSFB2a(1)  --------->AHL20(1)    <---------MYB55(2)                      --------->ANAC58 <---------HSFC1(2)   <---------AHL20(1)    --------->AtMYB61            <-------MYC3               --------->HSFB2a(1)  --------->AHL20(2)    --------->MYB46(3)    --------->At4g35610          ---------->DOF2        <---------AHL20(2)       --------->MYB46(3)    <---------At4g35610------------>CBF--------->HSFC1(2)   <---------AHL20(2)------>ZmHOX2a(2) ---->DOF2  ------->MYC3    --------->AHL20(2)      ----------->GT1           --------->MYB46(3) ----   agactaagctaacacgtttttcacaagcaatataaaaaagaagcatccacaaatgggtttaatttaatgtaagtgtgtgatccaccaacagatgtgtaac  8427400     -------->ZAP1   >>>>>>>>>>WRKY11   <---------WRKY18(1)                           <---------At4g35610                   <-------TEIL   >>>>>>>>>>WRKY6                               --------->ZAT2                      <---------ARR14(2)  --------->WRKY38(1)                            --------->At4g35610      --------->ALFIN1  =========  --------->WRKY12                            <---------At4g35610  <------ZmHOX2a(1) <---------GLK1(2) ->GT1          --------->DAG2       ----------->GT1         <------ZmHOX2a(1)       --------->ARR14(2) ------>DOF2   ---------->DOF2      --------->ALFIN1    <---------ZAT2  <---------ANAC46    <--------   aaagttgaccgaaaaacaaaagtgagtagagaaaccaagtggtgatatagcagccgagagctaggaagaggacggggtgaagaaacagattcgtctttct  8427500                  ================================bZIP_DOF                  <---------TGA1a                  ================MYC_MYB             --------->At4g35610             <---------At4g35610  <---------ANAC46          <---------ANAC58      <---------MYB46(3)          <-------GAMYB        <---------AtMYB61          <---------ANAC58     --------->ALFIN1                                                 <----          ==================MYC_MYB                             --------->ANAC58                <----         <---------MYB46(3) <------ZmHOX2a(1)              --------->ANAC46            <---------At4g35610         <------MYB83      <------MYB83                  ---------->DOF2    --------->ANAC46    <----     <---------HSFC1(2)    <------MYB46(1)         --------->WOX13(1)       --------->ANAC58   <-----     --------->HSFC1(2)<---------ANAC46          <---------ZAT18--------->ANAC58  --------->GLK1(2) ===========================bZIP_DOF   ---------->DOF2>>>>>>>>>RAP2.2----------->GT1   <---------ZAT2 --DOF2  <------MYB46(1) <--------P    <---------ZAT14--------->TOE2(3)     --------->ANAC58<--------   caatagaagcttggttgcagacttggggtaggagtggtgagtaaagagcagggcaatctaaaagtcacacaatgtaacaagcaaattctagctgatgttg  8427600                                                                        ------>ZmHOX2a(2)                                                                       <------ZmHOX2a(2)                                                                      <---------ARR11(3)                                                              ------>NtERF2                                                           --------->At4g35610                                                           <---------ZAT2              <-------------                                                           --------->ZAT2              ==============                                                           <---------At4g35610     --------->YAB1                     --------->YAB1                   <---------At4g35610         <---------ATHB12                    <---------YAB1                    --------->At4g35610  --------->LBD16      <---------TOE2(3)                               <---------ZAT2  <---------ARR14(2) --MYB83<------ZmHOX2a(1)                       --------->At4g35610   --------->ARR14(2) --MYB46(1)       --------->YAB1           ----------->GT1--------->ALFIN1--------->LBD16           - -----MYB46(3)   <-------TEIL       <---------ANAC46  --------->ZAT2  --------->ARR11(3)       ------ ----AtMYB61   --------->ARR14(2)   --------->ALFIN1 ------->TEIL    <---------GLK1(1) <------------- ---RAV1(1)    <---------ARR14(2) --------->ALFIN1 <-------TEIL      --------->GLK1(1) --------->ANAC46   gtcgagttgaggatgcagattcatgataaaactaagttgtggggagagtaagatgcagctgtgctgccaagagatccccgataaatcatacctcacaagg  8427700  Previous    Next  AGI:  At1g23850.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23840.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74577.1) Range:  from: 8425728    to: 8427224    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g23860.1    Description:  SRZ-21. similar to SRZ-22 (SERINE/ARGININE-RICH 22) [Arabidopsis thaliana] (TAIR:AT4G31580.2); similar to SRZ-22 (SERINE/ARGININE-RICH 22) [Arabidopsis thaliana] (TAIR:AT4G31580.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40907.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 8427345    to: 8429308    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version