Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                    <                                                                                                   --                                                                                                   --                                                                                                   --                                                          <---------ARR14(2)                      <--                                                      --------->LBD16                        <-------                                                     <---------HSFB2a(2)                     <-------                                                     --------->HSFB2a(2)                     <-------                                                    <---------LBD16                      <---------ANAC58                                                    <---------ANAC46                    <---------ZAT2          ----------->GT1                      --------->MYB52(2)                       --------->ZAT2         --------->HSFB2a(2)                 <---------MYB52(1)                         --------->HSFB2a(1)         <---------HSFB2a(2)               <---------ANAC58                             --------->HSFC1(2)   --------->ARR14(2)                      <---------ANAC58                             <---------HSFC1(2)   <---------ARR14(2)       --------->At4g35610<---------MYB46(3)         <---------TGA1a<---------ANAC58 ---------TOE2(3)        ---------->DOF2  --------->ZAT18 --------->ARR14(2)           ------->TEIL-- ---------TOE1(3)  --------->MYB52(1)     <---------ZAT18 --------->GLK1(2)   <---------ANAC46   <---   ctgaggttttgctggaaaaaaaaaccgaagagctcaaaacagagtgcgtttgtttctgggaatcttgaagcctctcacttgcgaagacgaagcttgcttg  8417100                                                                           --------->ATHB12                                                                          <---------YAB1                                                                       ----------->HVH21                                                                       ----------->TGA1                                                                     <---------ANAC46                                                                     <---------ANAC58                                                                     ==========================MYC_MYB                                                                     --------->bZIP60(1)                                                                     <---------bZIP60(2)                                                                     <---------TGA1a                                                                     --------->TGA1a                                                                     --------->TGA2(1)                                                                     <---------TGA2(1)                                                                     <---------bZIP60(1)       --------->ARR11(3)                                            ================================   --------->MYB46(2)                                                <---------ANAC58   --------->MYB111(1)                                               <---------ANAC55(1)   --------->MYB111(2)                                               <---------ANAC55(2)            - ------MYB46(1)                                                      <---------O2                <--- ------MYB83                                                         --------->O2                <--- ------->MYB111(2)                                                  ----------->STF1             <--- ------->MYB46(2)                                                <-----------HVH21    --------->MYB46(3) ------->MYB59                                 <---------At4g35610----------->TGA1   <---------TOE2(3) -------MYB55(1)                               --------->At4g35610----------->HVH21  <---------TOE1(3) --ANAC58                                <---------ANAC58       --------->ANAC55(2) <---------DOF5.7(2) --ANAC58                                <---------ANAC58       <---------ANAC55(2) --------->MYB52(1) --ANAC46     <<<<<<<<<TBF1         <----------DOF2          <---------ATHB12     --------->DOF5.7(2) ------->MYB111(1)  <<<<<<<<<TBF1   ===========================================bZIP_DOF------->GAMYB< ------MYB52(1)  <<<<<<<<<TBF1      <---------DAG2    ----------->GT1--------->ANAC55(2) <------ZmHOX2a(2)   ttaggtagttatcttcttcttcttcttcgtttcaattcctttttcgttcatctgaaatgtgaaatcatgtgacgtgacgattgggttaacgatcgaattt  8417200                                                                                   ------>ZmHOX2a(2)                                                                                  <------ZmHOX2a(2)                                                                                 --------->ARR11(3)                                                                                 <---------ARR14(2)                                                                                 --------->ARR14(3)                                                                                 <---------ARR14(3)                                                                                 <---------ARR11(3)         <----------DOF2                                                         --------->ARR14(2)   <---------YAB1                                                                --------->GLK1(2) ===================bZIP_DOF                                                  <---------TOE1(3) -------->ARR14(2)         --------->YAB1                                     <---------TOE2(3) ------ANAC46        --------->TOE2(3)                            --------->HSFB2a(2) ------ANAC58        <----------DOF2   ---------->ID1<---------ATHB12<---------ARR11(3) ------ANAC58        --------------->AGL15       ------------>CBF <---------HSFB2a(2) ---------ARR14(2)   <---------------AGL15     <----------DOF2<---------GLK1(2) <------ZmHOX2a(1)  <-   cgtatatgattcttttctagtttctttaatcagcaagtcttgttgttttctttcaatcgagactgattctagatgttcttaaggatcttgttcgatgaaa  8417300                                                                                                -----                                                                                                -----                <---------HSFC1(1)                                                              -----                <---------HSFB2a(2)                         ------>ZmHOX2a(2)                <-------TEIL                --------->HSFC1(1)                        <---------ARR11(3)         <---------ANAC46      ------->TEIL              <---------AtLEC2          --------->ARR11(3)         <---------ANAC58      --------->GLK1(2)     <----------DOF2   <---------ARR14(2)                     <---------ANAC58 <---------AtLEC2         ------->TEIL        --------->ARR14(2)                <---------TOE2(3) --- ----------GT1  --------->HSFB2a(2)  ------->TEIL    --------->MYB52(1)  <---------TOE2(3)  ---------   tttacatgaatctgtattctagaagatgaactttgcatgaatcatccatatcgacgaactgatcttgttgttgttatggattaagtttcttgagatacaa  8417400                                                      ------------>CBF     ------------>CBF ------>ZmHOX2a(2)        <---------YAB1               --------->ANAC46 ---->ANAC58   ------>MYB83                   <---------ARR11(3)          <-----------GT1   --------- ---->ANAC58   ------>MYB46(1)             <----------DOF2         ------------>CBF       <------ZmHOX2a(1) ---->ANAC46------------>CBF            --------->ARR11(3)       <------MYB46(1)    <---------ANAC58 ------->DOF2 --------->WOX13(1)        <---------ARR11(3)       <------MYB83       <---------ANAC58 >CCA1(2)<---------ATHB12              <---------CCA1(2)        --------->MYB59     <---------ANAC46-   gaaaggcttcaatgaccaatctgatctgttttgatgaacacaaatctttatctttgaacaatggattaggtcaatttcacaccatggctggaggaagtaa  8417500          <---------YAB1       <------NtERF2      <-----------TGA1      <-----------HVH21                     ----------->HVH21      ------>NtERF2               <-----------HVH21     --------->bZIP60(1)          --------->TOE2(3)                    --------->TOE1(2)    --------->RAP2.3(1)          --------->ANAC58                   <---------ARR14(2)  --------->DEAR3(1)             --------->ANAC58                   --------->ARR14(2) <---------LBD16                 --------->ANAC46               <---------At4g35610 -->GT1--------->TGA2(2)        --------->SPL7 <---------AtMYB61--------->At4g35610 -------->MYB52(1)      ---------->DOF2   <---------ANAC46   <------ZmHOX2a(1)  --------->ARR11(3)  <   atcaccggcgtcatctttggaagatggaaaggcatacgtcaatgctgtgaaggtcgcattggaggaagcggaacctgcaaaatatcaagagtttctaaga  8417600                                                                   ==================================                                                                   --------->TGA1a                                                                   <---------TGA1a                               <------MYB46(1)                    <-------MYC3                          --------->ALFIN1                ---------->DOF2                         <--                        --------->ALFIN1                  ===================bZIP_DOF           <----          ----------->HVH21    <------MYB83           <----------ID1                        <--------   --------->YAB1    <---------AtMYB61             ---------->DOF2------->MYC3      <---------TOE2(3) ----------DOF2 <---------ANAC46                   ==========================bZIP_DOF     <---------YAB1   ctctttcatgaggtgatagcgcgaaggtgtgtttggtttgctcttaaacagtctaaagaacaaagacacatgtgagaattgattctaatgttatttttat  8417700                                                                                             <-------                                                                                             --------                                       =====================HOX2a_HOX2a                      <-------                              --------->ANAC58                                               --------                              --------->ANAC46                                              ------->TEIL        <---------------AtSPL3--------->ANAC58                       <---------ANAC58  <---------ANAC58     <------ZmHOX2a(1)     <---------ZAT14           <------ZmHOX2a(2)                 <---------ANAC58 ========bZIP_DOF          <---------ZAT18          <---------ARR11(3)      --------->AHL20(2) --------DOF2              --------->ZAT14          --------->ARR11(3)      <---------AHL20(2) -----YAB1                 --------->ZAT18      ---------->DOF2      <---------ANAC58<---------YAB1 -AHL20(2)          <----------DOF2    <------ZmHOX2a(1)             <---------ANAC46--------->ICU4   ctttgtaggatgggtatggctactttcagtgcacgcatgcaggacctcttgaaagatcacccgagtctgtgtcttggtttaaatgtcatgcttgcacctg  8417800                                                                         ------>NtERF2                                                                      --------->LBD16                                                                     --------->HSFB2a(2)                                                                     <---------HSFB2a(2)                                                                    <---------LBD16                                                                    --------->SPL7                                                                  <---------SPL7                                                                  <-----------HVH21                                                                  <-------PIF5                                                                  ------->PIF5                                                                 --------->ANAC46                                                                 --------->ANAC58                                                                 --------->TGA1a                                                           <---------SPL7<---------ATERF1(1)                                                           --------->ZAT18                                                          <---------ANAC58   ------>MYB83                                                         --------------->AtSPL8                                                  <------MYB83   --------->bZIP60(2)                                                ===========================MYC_MYB                                               ============================MYC_MYB                                               <-------GAMYB   <---------ALFIN1                                              --------->MYB55(2) <---------TGA1a                                              <---------MYB46(3) --------->O2------>MYB46(1)                                              --------->MYB111(2)=====================MYC_MYB                                             --------->ALFIN1--------->SPL7  -------->P --ZAT2                                   --------->DAG2 --------------->AtSPL3--------->TOE2(3) ->At4g35610                   ----------->ARR10<--------P<---------ANAC58--------->ATERF1(1) --At4g35610        --------->LBD16   --------->YAB1     <-----------------------TaNAC69(2) --->RAV1(2)       --------->LBD16   <-------TEIL <------MYB46(1)--------->ANAC58      --------------   agtatcagagagccatccctcccgaggctagcgaagagtttcataaggtggttggaagaagcgtaccacgtccggagcctaccatagatgatgcgacttc  8417900                                                             --------->ARR11(3)                                                   <---------GLK1(1)                                   --------->TOE1(2) --------->ICU4                                 ------->TEIL      --------->GLK1(1)                 <---------TOE1(2)           ----------->HVH21<---------ICU4        --------->ARR14(2)        ---------->DOF2   --------->ATHB12        <---------YAB1         <---------ARR14(2)  --------->ATHB12 --------->TOE2(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <---------ARR11(3)      <---------TOE2(2) --------->TaNAC69(2)      --------->ICU4        <------ZmHOX2a(1)  <---------WOX13(1) <---------MYB52(1)   atacctcattgctgtgaaggaagcatttcatgatgaacctgcaaaatatgaggaaatgcttaagctcttgaatgattttaaagctcgcaggtatgtatta  8418000  Previous    Next  AGI:  At1g23810.1    Description:  paired amphipathic helix repeat-containing protein. similar to paired amphipathic helix repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G24250.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40976.1); similar to putative histone deacetylase complex, SIN3 component [Physcomitrella patens subsp. patens] (GB:EDQ60631.1); contains InterPro domain Paired amphipathic helix; (InterPro:IPR003822) Range:  from: 8417484    to: 8418555    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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