Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                                  ---                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                      --------->AHL20(2)                        -----                                                    <----------DOF2    <-----------ARR10        -----                                           --------->GLK1(2)          <---------CCA1(2)         -----                                           <xxxxxxxxxxxxxxxxxxsmallRNA(se3)      ----------->HVH21<--                                --------->LBD16    <---------ANAC46  <---------RAP2.6(3)        -----                              <---------LBD16--------->ATHB12        ------>NtERF2 <---------LBD16---                             <---------At5g28300   <---------ANAC58 <---------ANAC58            ----- ---->DOF2    --------->CCA1(2)<---------LBD16     <---------ANAC58 <---------ANAC58           <-----   agagtgagagagagagatttgaatttgcatttaccgggagaggcgaatcagtggctttaaatttcccttgccgtctcttagcatcgacgggattaagagc  8399300         --------->TOE2(3)         <----------DOF2     --------->MYB46(3)   =============================RAV   ----------->RAV1(1) ------>NtERF2 --------->LBD16 <------NtERF2 -------->DEAR3(1) -------->RAP2.6(2) -------->RAP2.3(3) -------->RRTF1(3) -------->RRTF1(2) -------->RAP2.3(2) -------->ANAC58 -------->ANAC58 -------->ANAC46 ------->ATERF1(1) ------->RRTF1(1) -----NtERF2 ------->ERF1 ------->RAP2.3(1) --->NtERF2 ----->RAP2.3(2) ----->RAP2.6(2) ----->RAP2.3(3) ----->DEAR3(1)                         --------->LBD16                                             < ------DEAR3(1)                         ------>NtERF2                                        <------- ---->RRTF1(1)                        <---------LBD16                                        -------- ---->ATERF1(1)               --------->TOE2(3)                                          <-----------GT1 ---->ERF1                ------>ZmHOX2a(2)                                        --------->DEAR3(1) -------ATERF1(1)       <---------ARR11(3)                    <---------At4g35610--------->LBD16   -- ---->RAP2.3(1)         --------->ARR14(2)                    --------->At4g35610------>NtERF2     -- ------>At4g35610       --------->ARR11(3)                    <---------ZAT2    --------->DEAR3(1)--- ---->DEAR3(2)      ----------->RAV1(2)--------->ANAC46       --------->ZAT2    --------->ANAC46  --- ----ATERF1(1) --------->YAB1 <----------DOF2        <-----------GT1           <---------LBD16    ---   cgccgcaacaactttaatcaaaacctgatcttctttaatctccggcacaacaatgttactctccagcttcagaacatcaactccgccgtagtcactatac  8399400                                            <---------WRKY18(1)                                           --------->WRKY38(1)                                           --------->WRKY12                                     ----------->HVH21                                    --------->At5g28300                                    <-----------HVH21                                    --------->LBD16                                   --------->O2                                   <---------TGA1a                                   --------->TGA1a    ---------->DOF2                                   <---------O2    ----------->RAV1(2)                                   ============================MYC_MYB                                   ==============================bZIP_DOF                                 ------>NtERF2     --------->At4g35610   ------>NtERF2                 --------->LBD16   <---------At4g35610  --------->ANAC58              =============MYC_MYB<----------CDC5  --------->ANAC46              --------->ANAC46   ------>NtERF2  --------->ANAC58              ------->GAMYB     --------->DEAR3(1)          <---------ARR11(3)  <---------ALFIN1            <---------ATERF1(1) --------->RAP2.3(2)         --------->ARR11(3) ---------ALFIN1             <---------ARR14(2)--------->ANAC46               <---------GLK1(2) --ZAT14  <---------CCA1(2)<---------HSFC1(2) --------->DEAR3(2)            ----------->ARR10 ->ZAT14--------->REM1(1)  --------->HSFC1(2)<---------At5g28300    --------->ZAT2 ------->MYB46(3)          <---------HSFB2a(1)--------->MYB46(3)    <---------At4g35610        <----- ------->DEAR3(1)          --------->HSFB2a(1)-------->ZAP1--------->ZAT18 ------>NtERF2    <-------- ------>ANAC46  <---------LBD16--------->MYB46(3)--------->RAP2.3(1)<---------ZAT2        --------->ARR11(3) ------>ANAC58<----------DOF2--------->ARR14(2)--------->DEAR3(1)   --------->At4g35610<---------GLK1(2) ------>ANAC58===============================bZIP_DOF----------->HVH21    --------->DEAR3(1)<--------   acccacgccttcatctctttcggaatcgaagcatccgccgtgacattgaccgccgctgaagcgctctgagagctcgccgagattttcaagaatttcttgc  8399500                                                                                                   <-                     <---------ARR14(2)                                                          <---                     --------->ARR14(2)                                                          <---                     --------->GLK1(2)                                                          -----                     <-----------ARR10                                                         <-----                     <---------ARR11(1)                                                        <-----                     ------->TEIL                                                             <------                    <---------ARR14(1)                                                      =========                 ------>ZmHOX2a(2)                                                          =========                <------ZmHOX2a(2)                                                           =========                --------->ARR14(1)                                                          =========                --------->CCA1(2)                                                           =========               <---------ARR14(2)                                                           <--------               --------->ARR14(2)              --------->LBD16                              ---------               --------->ARR11(3)             --------->TOE1(2)                             ---------               <---------ARR11(3)             --------->TOE2(2)                             <--------             ----------->ARR10         <------MYB83                     --------->YAB1      ---------         --------->ANAC58              <------MYB46(1)                  <---------ICU4     <---------LBD16         --------->ANAC58             --------->MYB59                  <---------ATHB51  ----------->HVH21 ----At4g35610 --------->AGP1     --------->ATHB12                     <---------ATHB12<------NtERF2 -ANAC58 --------->ANAC46       <---------MYB52(1)                     --------->ICU4<---------ANAC58 -ANAC58 --------->ANAC55(1)   <-------GAMYB --------->DEAR3(2)      --------->YAB1  <---------ANAC58   tgactgtttgcacgcaagatccgaatctaactctgttgatttggtaaaccggcgattttgttgtgagagaacaataatgaagaagaggcgtctcacggcg  8399600                     --------->MYB111(2)                     --------->MYB55(2)                     --------->MYB52(2)                     <---------MYB46(3)                  <---------MYB46(3)                  --------->MYB52(2)                  --------->MYB55(2)                 --------->ALFIN1                 <---------AtMYB61                <-------GAMYB                <------NtERF2              <---------DREB2C(2)              <---------DEAR4(1)  <---------ANAC55(2)--------->MYB111(1) --------->SPL7<---------MYB46(3) --------SPL7 <---------DEAR3(1) ------------AtSPL3<-------GAMYB ---NtERF2    <---------RAP2.6(2) ---->LBD16   <---------ANAC58 ----ANAC46   <---------ANAC46 ----DEAR3(1) <---------ANAC58 ---LBD16    <---------ABI4(1) ==========================MYC_MYB ============================MYC_MYB ==========================MYC_MYB ==============MYC_MYB ==============MYC_MYB<-------GAMYB         <-----------GT1                       <----------DOF2 -TGA1a    --------->ALFIN1           <-------TEIL                            <---------CCA1(2) >TGA1a  --------->ALFIN1          <---------ANAC58                         <---------CCA1(2) >ANAC46 <-----------RAV1(1)       <---------ANAC58                       <---------ANAC58 -O2    --------->ALFIN1           <---------ANAC46                       <---------ANAC58   ------>ZmHOX2a(1) >O2   <-------GAMYB<--------P    ------>NtERF2       --------->ZAT6 ---------->DOF2    <----------DOF2   gagtacgggagttgtggcggtggttgttgcaagcgctgcgttcatttttcagtctgccactagttttgtctaaaaggcttatctctttcgctttcctctg  8399700                                   <---------WOX13(1)                             --------->ATHB12                            <---------YAB1                          --------------->AGL15                          <----------DOF2                      <----------DOF2                       --------->AHL20(2)                     <---------ANAC58                       <---------AHL20(2)                <---------ANAC58 <---------MYB46(3)<-------GAMYB                <---------bZIP60(2)<--------P<---------ANAC58                <---------ANAC58 <------MYB83<---------ANAC58   --------->ICU4                <---------ANAC46 <------MYB46(1)  <---------MYB46(3)             <---------MYB52(1)<---------WOX13(1)<---------AtMYB61                <-----------RAV1(1)  --------->AHL20(2) <---------ANAC58 *TSS <---------AHL20(2)  <---------TOE2(3)<------------CBF   tttttaaaatactctgtttcgtggctttctttgattggttgatattttcttgtggttgtcattttaatgtttatatcacaaaaattgtggcccataatcg  8399800          <---------At4g35610                                         --------->YAB1      <-----------RAV1(1)                                    <---------HSFB2a(2)     ------>ZmHOX2a(2)       <----------DOF2 --------->HSFB2a(2)   --------->WOX13(1)   --------->ARR11(3)   <-------TEIL         <---------HSFB2a(2)<<<<<<<ZML2                         -   <---------AGP1   <---------YAB1        <----------DOF2    --------->HSFB2a(2)             <-------   tttttgatctggtgctgattttgtgattcatctttgtttcatttcttttagaactacagaagtctagaacaatcacaaaacacttcggtttttgaacatt  8399900                         <-------TEIL                        --------->CCA1(2)              <---------ANAC58              --------->ANAC46              <---------ANAC58              --------->ANAC55(2)                             <----------DOF2              --------->ANAC58              --------->ANAC55(1)                             <---------DAG2               --------->ANAC46              <---------ANAC55(2)                    <---------AHL20(2)                    --------->ANAC58             <---------TOE2(3)                      --------->AHL20(2)                  <---------ARR14(2)            <-----------GT1                       --------->TOE2(3)          --------->MYB52(1) -------------->AtSPL8 <---------ARR14(2)         --------->TOE1(3)          ----------->RAV1(1) --ICU4  <---------ICU4--------->ARR14(2)         <----------DOF2 <---------YAB1        --------->ARR14(2)   acaatgtacaatttttacgtaagaagatacaatcgacattaatgggcctaaactttaaattgggctttatgaataagcccaacagttgagaaaacgcagt  8400000                                                                               --------->YAB1                                                                           <---------AHL20(2)                                                                           --------->AHL20(2)                                                                       ----------->GT1                                                                      ------->MYC4                                                                      <-------MYC2                                                                      <-------MYC4                                                                      ------->MYC3                                                                      ------->MYC2                                                                      <-------MYC3     <---------ANAC58                                                                     ================================                                                                     <---------TGA1a   <---------ANAC58                                                                     <---------O2     --------->MYB59                                                                     --------->O2  <------------CBF                                                                     --------->TGA1a<---------WOX13(1)                                                                     --------->ANAC55(2)                                                                  <---------ZAT14 --------->ATHB12                                                 --------->MYB52(1)  <---------ANAC55(2)    =========                                       --------->ARR14(2)         <---------ZAT18<---------YAB1                                 --------->TOE2(3)                --------->ZAT14--------->ICU4         <------ZmHOX2a(2)       --------->TOE1(3)            <---------ICU4   <---------ICU4 ---------->DOF2              <-----------GT1<---------ZAT18 <------ZmHOX2a(2)--------->ICU4------>ZmHOX2a(1)   actaaaagtcgatcatctaggcacgatgagattaaccatagaaaccgcgcacaacgaagcacgatcagtacacgtgttaaattatgattgggtccttggt  8400100                         --------->LBD16               --------->ORA47(1)              --------->DEAR3(1)            <---------At5g28300           <---------ALFIN1          --------->MYB46(3)         <------ZmHOX2a(2)         --------->CCA1(2)            ---------->DOF2                                           <----        --------->ARR11(3)       ----------->GT1                                                <----        --------->ARR14(2)   --------->AGP1                                                    <-----        <---------ARR14(2)--------->ANAC46                                                     ------        --------->AGP1   <---------LBD16                                                    ---------        <---------ARR11(3)--------->HSFB2a(2)                                              <---------ATHB12    ---------->DOF2  --------->ARR14(2) *TSS                                             --------->WOX13(1) ==============bZIP_DOF  ----------------->AGL2                  <---------ZAT2       --------->TOE2(3) ===============HOX2a_HOX2a--------->LBD16     ----------->GT1   --------->ZAT2   <---------GLK1(1)   agagattaaagatccaccgtccatttccccagaactagaaaaaagagaagggagaaaactttctccgagctcgattgtttttggaaatcgtcaatcagat  8400200  Previous    Next  AGI:  At1g23740.1    Description:  oxidoreductase, zinc-binding dehydrogenase family protein. Identical to Quinone oxidoreductase-like protein At1g23740, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9ZUC1;GB:Q945P3); similar to oxidoreductase, zinc-binding dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT4G13010.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96279.1); contains InterPro domain Alcohol dehydrogenase GroES-like (InterPro:IPR013154); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040); contains InterPro domain GroES-like (InterPro:IPR011032); contains InterPro domain Quinone oxidoreductase/zeta-crystallin, conser Range:  from: 8398104    to: 8399738    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g23750.1    Description:  DNA-binding protein-related. similar to DNA-binding protein-related [Arabidopsis thaliana] (TAIR:AT1G10590.1); similar to DNA-binding protein-related [Arabidopsis thaliana] (TAIR:AT1G10590.3); similar to DNA-binding protein-related [Arabidopsis thaliana] (TAIR:AT1G10590.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO66056.1); contains InterPro domain Nucleic acid binding, OB-fold, tRNA/helicase-type; (InterPro:IPR004365); contains InterPro domain Nucleic acid-binding, OB-fold (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold-like (InterPro:IPR016027) Range:  from: 8400140    to: 8401476    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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