Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                               --------->MYB46(3)                                                                             <---------MYB52(2)                                                                      <------MYB83                                                                     <---------AtMYB61                                                                     <---------DEAR3(1)                                                                     --------->MYB111(2)                                                                     --------->MYB46(2)                                                                     <---------MYB46(3)                                                                     --------->ALFIN1                                                                     --------->MYB111(1)                                                                    <---------MYB55(1)--------->WRKY38(1)                        --------->ZAT14                          >>>>>>>GRF7 <------------MYB.PH3(2)                        <---------ZAT14                         =======================RAV                    --------->ANAC58                     <---------AHL20(2)----------->RAV1(1)                    --------->ANAC58                   <----------DOF2<------MYB46(1) --------->WRKY12              <---------WOX13(1)                    --------->GLK1(2)--------->MYB55(2)<---------WRKY18(1)            --------->ATHB12                ---------->TaMYB80  <-----------RAV1(2)  <---------WOX13(1)           <---------YAB1                 <------ZmHOX2a(1)   <-----------HVH21    --------->ATHB12           --------->ICU4       ----------->RAV1(1)<---------GLK1(2)<--------P------->GAMYB         <   gaagccagaccacatgattgacactctacagagacaacacaagaggaatatgagattctttatttgtcaggttggtgcaacaaactcattgacctcttct  8326900                                                                                            <--------                                              <---------MYB52(1)                      --------->ARR11(3)                                           ---------->ID1                   <---------------AGL15                                       <---------MYB52(1)     <---------ICU4--------------->AGL15         --------->AHL20(2)          <---------DEAR3(2)  --------->DEAR3(1)----------------->AGL3       <----------DOF2               <---------MYB46(3) --------->ANAC46   <-----------------AGL3   - ---------AHL20(2)             <---------GLK1(2)      <---------ALFIN1     ----------------->AGL2  --   attttatgtcttttaatatactaatagaatatagaatgtctgttcgtcgttattcaacaccgcatcatgtctaaaattctaaaaatagcatcttgaggta  8327000                <---------HSFB2a(2)                       <---------CCA1(2)          <---------GLK1(2)       <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          --------->ARR11(3)     <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          <---------ARR11(3) <----------DOF2      --------->AHL20(2)              <---------ICU4  --------->At4g35610    <----------DOF2          <---------AHL20(2)              --------->YAB1    - -TOE2(3)<---------RVE1(1)  <------------------------ANAC81                   <---------YAB1 -------- -------->DAG2  --------->HSFB2a(2) <xxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->bZIP60(1)    -------- -------->DOF2 <---------LBD16   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------bZIP60(1)    --------   gaaaagctgagagattttctgggacttctttcttttttttttttttttttttttaatttcaaatctcatgggacatcattttgatcatgaacaagttgac  8327100                                                      <---------ANAC58           --------->REM1(2)                          <---------ANAC58           <---------ZAT14                  --------->DAG2        <---------ANAC46             ----------->GT1  <---------ANAC46  <---------TOE2(3)          --------->ANAC58      ----------->HVH21 --------->DOF2   <---------ARR14(2)<-----------------------TaNAC69(2) ->WRKY45  --------->ZAT14   --------->ANAC58     <-------MYC3                                      - ->WRKY12 <---------ANAC46 ---------->DOF2 ---------->DOF2   <----------DOF2                  <------ ->WRKY38(1)   <---------TOE2(3)---------->DOF2   ------->MYC3                ----------->GT1<-------   cacaaaggttttgtgtagaggttttggagtaaagcaaagaagtgaaaaagcacatgacttgtgctttaagcatagatgtatagaaaaacaaggccttatc  8327200                          --------->ANAC46                        <-----------GT1                                      --------->YAB1                  ------------>CBF                                           <---------ICU4                --------->ANAC46                                            <---------ATHB12           --------->ANAC58                  <-----------GT1       --------->ANAC46           --------->ANAC58    <---------MYB52(2)                  --------->ANAC58      <----------DOF2  ---------->DOF2    <---------ICU4           --------->ANAC58    ------->TEIL--------->ANAC58          --------->YAB1<---------AHL20(2) ------>MYB46(1)         <- -------------->AtSPL8<---------ATHB12   --------->AHL20(2)     -------->P ------>MYB83---------->DOF2 ---ARR11(3)    --------->ANAC58--------->AtMYB61       --------->AHL20(2)--------->WOX13(1)      <-- --CCA1(2) --------->ANAC46    --------->MYB46(3)       ----------->TBP ------------>CBF        <----   ttcatgtacttttaagccaagccaataaaccccacaaaccccattaattactctgcatataaattcaacccgaaaccaatcatctctaccaaagaaataa  8327300                                       <---------HSFC1(2)                                       <---------HSFB2a(1)                                       --------->HSFC1(2)                                       --------->HSFB2a(1)                                      --------->GLK1(2)                                      <---------KAN4(2)                                     <---------GLK1(2)                                    <------ZmHOX2a(1)     <---------WOX13(1)                           <---------ICU4              <---------YAB1                           --------->YAB1         <---------ANAC58 *TSS                     --------->ICU4          <---------ANAC58             --------->ARR11(3) --------GLK1(2)        --------->YAB1--------->ARR14(2)--------->ATHB12       <---------ARR11(3) --- ----ZmHOX2a(1)        <---------AHL20(2)         <---------ANAC46     <---------WOX13(1)         <-- -----TOE2(3)         --------->AHL20(2)         ---------->ID1     <---------YAB1       <----------DOF2   ggaatctcattagtaggcactggatttaataatcaacaggaatcttctcttggcgttttgattgaagcatatgatggataagctcttcattctttctctt  8327400                                                      ------>ZmHOX2a(2)                                                     <------ZmHOX2a(2)                                                    <---------ARR14(3)                                                    --------->AGP1                                                    <---------AGP1                                                    --------->ARR11(3)                                                    --------->ARR14(3)                                                    <-----------ARR10                                                    <---------ARR14(2)                                                    --------->ARR14(2)                                                    <---------ARR11(3)                                              <---------REM1(2)      <---------MYB52(1)                      <---------ZAT14     <-------GAMYB                          --------->ZAT14    <---------------AGL15      <-----------RAV1(2) <---------CCA1(2)   <-----------------AGL3     --------->ZAT2<---------ZAT18                                   <------   <-----------------AGL2  --------->At4g35610--------->ZAT18                              <---------ZAT6 <---------AGP1            --------->ZAT2  <---------ANAC46                      <----------DOF2 ------>HSFB2a(2)          <---------ZAT2 <---------------AtSPL8              --------->ARR11(3) -------HSFB2a(2)          <---------At4g35610--------->ZAT14--------->GLK1(2)<---------ARR11(3)<----   ctaggtctgttattggtaactgcttatggagctgcagggaagatggtgtacacagatcttgacattcttgacgagcttgagaactttgatgtactggtag  8327500                                             --------->LBD16                                             ------>NtERF2  --------->ARR14(2)           <---------ZAT2                                             <---------RAP2.6(3)                         --------->At4g35610                                            --------->ATERF1(2)                          --------->ZAT2                                            --------->RAP2.6(2)                          <---------At4g35610             ---------->DOF2                <---------ATERF1(2)                        <-----------RAV1(2)       <---------YAB1                    --------->ANAC58   --------->ARR11(3)        --------->ZAT14     --------->YAB1                      --------->ANAC46   <---------ARR14(2)        <---------ZAT14    --------->ICU4              --------->ICU4       ----------->GT1                  --------->ABI4(2)  --------->YAB1                <---------ATHB12<----------DOF2                      --------->ALFIN1 --------->ICU4                 <---------YAB1<------NtERF2 --------->GLK1(2)      <---------ANAC58 <---------YAB1  --------->ARR11(3)      --------->ANAC58  --------->RVE1(1)       <---------ANAC46 --P<---------YAB1       <---------WOX13(1)--------->RAP2.6(3)                     <---------ANAC58 -----At4g35610  <---------ARR11(3)  --------->YAB1 <---------HSFB2a(2)      <-------TEIL----------->RAV1(2)   atgatgatgatgatacaaagctcttggattggccatcattcacaagccggcattctggtaaaaatctggtgaatgttgatacattcggtgcagctggaga  8327600                                       ----------->HVH21                                     <---------ICU4             --------->ANAC58                 <---------TOE2(2) <---------AHL20(2)           --------->ANAC58                <-----------RAV1(2)--------->AHL20(2)       ---------->DOF2                        --          --------->YAB1          --------->YAB1          <---------MYB59                      <-----         <---------YAB1 <---------ANAC58                  --------->TOE2(3)                    ------       <---------At4g35610 --------->KAN4(2)             <---------ANAC55(2)      --------->HSFB2a(2)   --------->GLK1(2)    <---------ANAC58  <-----------RAV1(2)   --------->ANAC46  <---------HSFB2a(2)   tggagtttctgatgatactcaggtttgcttattccataaaaatgacaggttatctagatacctaaaacgctatcagttctatgtctggaatgaaacaaat  8327700                                                                                                  <--            <---------ICU4                                                                       ----            --------->YAB1                                           <---------LBD16  <---------CCA1(1)            --------->ATHB12                                         <---------At5g28300   <---------           --------->ICU4                                       <---------CCA1(1)     <---------RVE1(1)           <---------ATHB12                                     <---------RVE1(1)    <---------ARR11(3) ------->LBD16                            <---------AtLEC2     <---------ARR11(3)    --------->ARR11(3) ----ARR14(2)                         <---------ANAC58         --------->ARR11(3)  --------->MYB59--- --->ARR14(2)    ----------->GT1      <---------ANAC58  <---------ANAC46           ----------->ARR10   ccccaaacttgaaatcatggggaaaatttctaaacaaattgtttgcattgtagacttggcctatagatatttacggaggtctagttagatatttttctgc  8327800  Previous    Next  AGI:  At1g23460.1    Description:  polygalacturonase. similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT1G70500.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66097.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 8327301    to: 8329611    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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