Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              <---------ARR14(2)                            --------->ARR14(2)                            <---------GLK1(2)                           <------NtERF2                          --------->LBD16                         --------->RAP2.6(2)              <---------ARR14(2)          <---------ZAT2 --------->LBD16             <---------At5g28300          <---------At4g35610                       <---------WRKY38(1)     --------->LBD16    <---------LBD16             <---------WRKY12    <---------LBD16     <------NtERF2              ----------->HVH21   <---------LBD16     ------>NtERF2              <-----------HVH21 ---------ABI4(2)     --------->ANAC58         --------->ZAT18                                ------- -------->ZAT18       --------->ANAC58         --------->ZAT14                ------>ZmHOX2a(1) ---------ZAT14       <---------DEAR3(1)       <---------ZAT18               --------->TOE1(3)------- -------->ABI4(2)<---------ANAC55(2)      >>>>>>>>>ARR2        <------ZmHOX2a(1)     <---------MYB52(1) ---------ZAT18  --------->ANAC55(2)      >>>>>>>>>ARR1 <-----------HVH21    --------->TOE2(3)------- -------->ZAT14--------->CCA1(2)        <---------YAB1 --------->DEAR3(1) ------>ZmHOX2a(1)   <------ --->SPL7 --------->At4g35610           <---------TOE2(3)----------->RAV1(2)----------------->AG   ggtgcaccgggaagctgatacgagacgccggaatcgccgattaagattgtgcggtcaccgtctgaggagataactccttccttaaccggtttgtagtatc  8314500         <---------LBD16        <---------ANAC46     ----------->HVH21   <------MYB46(1)   <------MYB83  <---------DEAR3(1)             >>>>>>>>>ARR2  --------->MYB46(2)           <---------YAB1  <---------MYB46(3)        --------->ARR14(2)                                                      <  --------->MYB52(2)   --------->At4g35610                                   <---------YAB1       <-- -->GLK1(2)--------->LBD16  <---------ARR14(2)                    --------->ATHB12                <-- -->ARR11(3)           --------->ZAT2                             <---------ICU4                 <--- -->ARR14(2)   --------->At4g35610           <---------LBD16     --------->ICU4          <---------YAB1 ---ARR14(2)   <---------At4g35610   <---------TOE2(3)           <---------YAB1    <---------YAB1<---   tggttcggtgatgcggaagcttaagagctggatttgattgtggtttcttcgggtttgtatcggtttgatgattagttttctgattacgatttctattgga  8314600                                       --------->HSFC1(2)                                       <---------HSFC1(2)                                       --------->HSFB2a(1)                                    <------NtERF2                                   --------->LBD16                                   <------NtERF2                                   <---------RAP2.6(3)                             --------->ATERF1(1)                            --------->At4g35610                            <---------ZAT2                            --------->ZAT2     <---------ARR14(2)     <---------At4g35610     --------->ARR14(2)    <---------ARR14(2)  <---------ANAC58         --------->ARR14(2)         --------->ARR14(2)  <---------ANAC46         <-----------ARR10          <---------ARR14(2)  ----------------->AGL1  <------NtERF2<---------KAN4(1)  --------->LBD16  <---------ANAC58        --------->ATERF1(1)      <---------YAB1  --------->ANAC55(2)    --------->LBD16--------->KAN4(2)--------->ANAC58  <---------ANAC55(2)   <---------DEAR3(1)      --------->ICU4       <---------ANAC46 <-------TEIL          <---------LBD16 --------->KAN4(1) --------->ANAC46 ---------ANAC46       --------->At4g35610   ------>ZmHOX2a(1)       <---------ANAC58 ----MYB83   <---------ARR14(2)   --------->RAP2.6(2) ------->TEIL   <---------ANAC58 ----MYB46(1)--------->GLK1(2)   <---------LBD16<---------YAB1      <------NtERF2                  <- ------DEAR3(1)    --------->ARR14(2)  <---------HSFB2a(1)------>NtERF2                            -- ------AtMYB61     <---------ARR14(2) <---------KAN4(2)  --------->ANAC58                         ---   tggtgcgtatttgggaatcggtatcggcggagctggccggaatgttcctgatgatgaatccgccattggaggcgttgaaggaagtgaagagaagagatta  8314700                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                     --------->ANAC46                                                                                     --------->ANAC58                                                                                     --------->ANAC58                                                                                  <---------ETT(2) <-                                                                               ------>ZmHOX2a(1)  <-- --------ARR11(3)                                                       ----------------------->TaNAC69(2) ------->ARR11(3)          --------->YAB1                               <---------DAG2            --- ------>RVE1(1)     ------->GAMYB*TSS    >>>>>>>>>TBF1                  <----------DOF2           <--   atatctcttagtgatgctacaatcgccattgatactcagagaagaagaagatgagagttttagtagttttcaaactttatcctgtagacgacatcgttta  8314800                   --------->AHL20(2)         <----------DOF2    <---------ANAC58    <---------ANAC58    --------->ANAC55(2)   <---------ZAT18    <---------ANAC55(2)   --------->ZAT18    <---------ANAC46 <------------CBF --------ICU4      <---------AHL20(2)                                   --------->TOE2(3) ------->ATHB12    <---------AHL20(1)                                   <---------ANAC58 ------->YAB1      --------->AHL20(1)                          --------->TOE1(3) -------HAHB4     <---------AHL20(2)                          --------->ZAT6 -------ATHB12    --------->AHL20(2)                        <-----------GT1            <------------CBF ------>ICU4  --------->ICU4   ---------->DOF2        ------->TEIL      <---------ANAC58       <----- -------YAB1 --------->ANAC55(2)              --------->GLK1(2)--------->TOE2(3) ---------->DOF2   atcattacgggctttacttattaaattgggccctaaggccaggcccataatctatggacttgtaaccctaatttccttgatataaaagctattgttttca  8314900                                 ------>ZmHOX2a(2)                                <------ZmHOX2a(2)                               --------->ARR14(3)                               --------->ARR14(2)                               <---------ARR14(2)                               <---------AGP1                               <---------ARR14(3)                               <-----------ARR10                               --------->AGP1                               --------->ARR11(3)  <---------LBD16                               <---------ARR11(3) <---------ANAC46                              <---------CCA1(2) --------->MYB52(1)                             ----------->ARR10 ----------->HVH21                  --------->At4g35610                    --------->ANAC58         --------->TOE2(3)                  --------->YAB1             <---------------AGL15           --------->TOE1(3)         <---------ZAT6             *TSS   --------->ANAC58        ----------------->AGL1--------->TOE2(3) ------GT1   --------------->AGL15  <---------ANAC46              --------->TOE1(3)   ctctctgcgttttttctcaaacaagaaaatgcagatcttcgtgaaaaccctaacggggaagacaataaccttagaggtagaatcatcagacacaatcgac  8315000                                            --------->At4g35610                      --------->ANAC58     --------->ANAC58                 --------->ANAC46          --------->ANAC58             --------->CCA1(2)           <------ZmHOX2a(2)             <------ZmHOX2a(2)          --------->ARR14(2)     --------->LBD16            <---------ARR11(3)          <---------ARR14(2)    --------->LBD16            --------->ARR11(3)      <---------LBD16          <---------LBD16            <---------ARR14(2)     --------->MYB52(1)   ------>ZmHOX2a(2)            --------->ARR14(2)    <---------ALFIN1    --------->ARR11(3)                     <-------           --------->GLK1(1)  --------->GLK1(1)  <---------MYB46(3)                          --------          ----------->ARR10  <---------GLK1(1)--------->MYB52(1)<------NtERF2           --------->ZAT6   ---------->DOF2    --------->ANAC58--------->LBD16 <---------ARR11(3)               --------->ZAT18   aatgtgaaagcgaagatccaagacaaggaaggaatcccaccggatcagcaacggttgatcttcgccggaaaacaattggaagatggaagaacactagctg  8315100                                                                                       --------->TOE2(2)                                                                                       --------->TOE2(3)                                                                                       --------->TOE1(2)                  <---------WRKY38(1)                           <------ZmHOX2a(1)--------->ANAC58           ---------->DOF2                           <-------TEIL                --------->ANAC55(1)         --------->LBD16  --------->ATHB12          --------->ALFIN1             --------->ANAC58        <---------HSFB2a(2)    <------MYB46(1)   <---------------AtSPL8       <-------TEIL        --------->HSFB2a(2)    <------MYB83      --------->ALFIN1         --------------->AtSPL3 --At4g35610      <---------DEAR3(1)             <---------DEAR3(1)       <---------------AtSPL8 ->At4g35610      ----------->HVH21             <------ZmHOX2a(1)   >>>>>>>>>TBF1--------->ANAC46   attacaacatccagaaagagtcgacgcttcatttggttctacgtctgagaggaggtgcgaagaagaggaagaagaagacgtacacgaaacctaagaagat  8315200             ---------->DOF2           --------->ANAC58           --------->ANAC46             <-----------GT1                                           <--           --------->ANAC58      <---------ZAT14                                                 ----       --------->ANAC46          --------->ZAT14                                      <---------ZAT18     --------->ANAC46            <---------At4g35610                   <---------MYB46(3) ------>ZmHOX2a(1)     --------->ANAC58        --------->ARR14(2) <-------TEIL ---------->DOF2          --------->ZAT18     --------->ANAC58        <---------ARR14(2)<--------P--------->ALFIN1      ---------->DOF2 <-----   taagcatacgcacaagaaagtgaagctagcagttctgcagttttacaaggttgatggaagtgggaaagttcagaggttgaagaaagagtgtccttctgtt  8315300                                                                    <---------ANAC55(2)        ------>ZmHOX2a(1)                           <---------GLK1(1)      <---------HSFB2a(2)      <        <---------HSFB2a(2)               --------->ATHB12          <---------ANAC46           <-----        --------->HSFB2a(2)               -------->ATHB1            --------->ANAC55(2)        <-----       <---------LBD16<---------ANAC58    --------->ATHB51          <---------ANAC55(1)       -------  <---------AtMYB61   <---------ANAC58    <---------ICU4            <---------ANAC58         <------- -----GAMYB           <---------ANAC46   <---------YAB1             <---------ANAC58<---------At4g35610 ----->MYB52(2)  <---------AtLEC2        --------->ICU4 --------->ALFIN1  <XXXXXXXXXXXXXXXXXXXXMIR396A ----MYB52(1) <----------DOF2   <---------YAB1 <---------ANAC46    <<<<<<<<<NAP     --------->At4g35610   agttgtggtcctggaactttcatggcgagtcatttcgataggcattattgtgggaaatgtggaactacttacgtgttcaagaaggctgatgaagagtagg  8315400  Previous    Next  AGI:  At1g23400.1    Description:  ATCAF2/CAF2 (ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2). Identical to CRS2-associated factor 2, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9LDA9); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66095.1); contains InterPro domain CRS1/YhbY (InterPro:IPR001890) Range:  from: 8312065    to: 8314733    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g23410.1    Description:  ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA). Identical to 40S ribosomal protein S27a-1 (UBQ15) [Arabidopsis Thaliana] (GB:P59271;GB:Q29PZ3;GB:Q9LDJ2); similar to UBQ6 (ubiquitin 6), protein binding [Arabidopsis thaliana] (TAIR:AT2G47110.1); similar to UBQ5 (UBIQUITIN 5), protein binding [Arabidopsis thaliana] (TAIR:AT3G62250.1); similar to ubiquitin extension protein [Lupinus albus] (GB:CAA80334.1); similar to ubiquitin extension protein [Lupinus albus] (GB:CAA80333.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Ribosomal protein S27a; (InterPro:IPR002906) Range:  from: 8314913    to: 8315520    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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