Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             <------NtERF2                           <-------GAMYB                           --------->At5g28300                          <---------DEAR3(2)                          <---------MYB46(3)                         <---------DREB2C(2)                         --------->ALFIN1                         <---------DEAR3(1)                        <---------ABI4(1)                        <---------------------WRI1                        <------NtERF2                        --------->ATERF1(1)                       <---------ATERF1(1)                       <---------DEAR4(2)                       ------>NtERF2                       --------->LBD16                       <---------RAP2.3(1)                       <---------ERF1                      --------->ATERF1(2)                      --------->DEAR3(1)                      <---------DEAR3(1)                      <---------ATERF1(2)                     --------->ERF1                     --------->DEAR4(2)                     --------->RAP2.3(1)                     --------->ATERF1(1)                     <------NtERF2                    --------->LBD16                    <---------ATERF1(1)                   --------->ANAC46               <-----------GT1                                                                  <----            <---------GLK1(2)                                 --------------------->WRI1   <---------WRKY38(1)            --------->ARR11(3)                              <<<<<<<<<TBF1                  --------->ZAT14            <-----------ARR10<---------MYB46(3)       <---------HSFB2a(1)                  <---------WRKY12            <---------ARR11(3)                        --------->HSFB2a(1)         <----------DOF2            <---------ARR14(2)                        <---------HSFC1(2)         <---------ANAC58            --------->ARR14(2)                        --------->HSFC1(2)         <---------ANAC58  <---------MYB59 <---------LBD16           <<<<<<<<<<<<<<<<<LFY                --------->ABI4(2) --------->ANAC55(2)------>NtERF2  ---------->DOF2  <---------GLK1(2)        ------->GAMYB <---------ZAT14   catacttaactccagattttcccgccggcggtggattaaaagaatcaaacaatggaatcttcttcttcgatttcttcaacggtgctttcccagtccacgg  8314300                     --------->ANAC46                     --------->ANAC58            --------->ALFIN1                     -------->P           <-------GAMYB                         ------>MYB46(1)          <---------DEAR3(2)                     ------>MYB83          <---------MYB46(3)               --------->ARR14(2)         <---------DEAR3(1)                ------->TEIL                                             <         <---------DREB2C(2)            --------->ANAC46        <---------ANAC58                    <         <---------At1g77200      <---------DEAR3(2)----------->GT1                                 -       <-----------HVH21    ---------->DOF2<---------ARR14(2)   <---------ANAC58                    -     <------NtERF2   --------->ANAC58   --------->ANAC58    <----------DOF2                         -  <------NtERF2    --------->MYB52(1)   --------->ANAC58 <-----------GT1                       ------ -------HVH21   <---------At4g35610  <-------TEIL--------->MYB52(1)           --------->At4g35610   <   tctcggcatcgtcggtggagcaaacggcataaaagccggttcacgaatcccaaccggtttaactttcggtgtctcagaatagctgaattgaaactcgaac  8314400                            <---------GLK1(2)                            --------->ARR14(2)                            <---------ARR14(2)                           <------NtERF2                          --------->LBD16                         --------->LBD16              <---------ARR14(2)          <---------At4g35610                        <---------At5g28300          --------->At4g35610                       <---------WRKY38(1)     --------->LBD16     --------->RAP2.6(2)        <---------WRKY12    <---------LBD16     <---------LBD16            ----------->HVH21   <---------LBD16     ------>NtERF2              <-----------HVH21 ---------ABI4(2)     --------->ANAC58         --------->ZAT18                                ------- ---------ZAT18       <---------DEAR3(1)       --------->ZAT14                ------>ZmHOX2a(1) -------->ABI4(2)     --------->ANAC58         <---------ZAT18               --------->TOE1(3)<------ -------->ZAT18  <---------ANAC55(2)      >>>>>>>>>ARR2        <------ZmHOX2a(1)     <---------MYB52(1) -------->ZAT14  --------->ANAC55(2)      >>>>>>>>>ARR1 <-----------HVH21    --------->TOE2(3)------- --->SPL7 <---------ZAT2<------NtERF2   <---------YAB1 --------->DEAR3(1) ------>ZmHOX2a(1)   ------- ---------ZAT14--------->CCA1(2)        <---------TOE2(3)----------->RAV1(2)----------------->AG   ggtgcaccgggaagctgatacgagacgccggaatcgccgattaagattgtgcggtcaccgtctgaggagataactccttccttaaccggtttgtagtatc  8314500         <---------LBD16        <---------ANAC46     ----------->HVH21   <------MYB46(1)   <------MYB83  <---------MYB46(3)             >>>>>>>>>ARR2  --------->MYB52(2)           <---------YAB1  --------->MYB46(2)        --------->ARR14(2)                                                      <  <---------DEAR3(1)   --------->At4g35610                                   <---------YAB1       <-- -->ARR14(2)           --------->ZAT2                             <---------ICU4                  <-- ---ARR14(2)   --------->At4g35610           <---------LBD16      --------->ATHB12               <--- -->ARR11(3)   <---------At4g35610   <---------TOE2(3)           --------->ICU4          <---------YAB1 -->GLK1(2)--------->LBD16  <---------ARR14(2)                   <---------YAB1    <---------YAB1<---   tggttcggtgatgcggaagcttaagagctggatttgattgtggtttcttcgggtttgtatcggtttgatgattagttttctgattacgatttctattgga  8314600                                       --------->KAN4(1)                                       <---------HSFC1(2)                                       --------->HSFB2a(1)                                    <------NtERF2                                   <---------RAP2.6(3)                                   --------->LBD16                                   <------NtERF2                             --------->ATERF1(1)                            --------->ZAT2                            --------->At4g35610                            <---------At4g35610     <---------ARR14(2)     <---------ZAT2     --------->ARR14(2)    <-----------ARR10  <---------ANAC46         <---------ARR14(2)         --------->ARR14(2)  <---------ANAC55(2)      --------->ARR14(2)         ------->TEIL  --------->ANAC55(2)     <------NtERF2--------->HSFC1(2) ------>NtERF2  <---------ANAC58        --------->ATERF1(1)      <---------YAB1    <---------ANAC58  <---------ANAC58       --------->LBD16--------->KAN4(2)--------->ANAC58  ----------------->AGL1<---------DEAR3(1)      <---------YAB1       <---------ANAC46 <-------TEIL          --------->At4g35610   ------>ZmHOX2a(1)       <---------ANAC58 ---------ANAC46       <---------LBD16 <---------HSFB2a(1)--------->LBD16 ----MYB83   --------->GLK1(2)    --------->RAP2.6(2) <---------ARR14(2) ----MYB46(1)<---------ARR14(2)  <---------LBD16--------->ICU4      <------NtERF2                  -- ------AtMYB61     --------->ARR14(2)  <---------KAN4(1) --------->ANAC46                          <- ------DEAR3(1)    <---------ARR14(2) <---------KAN4(2)  --------->ANAC58                         ---   tggtgcgtatttgggaatcggtatcggcggagctggccggaatgttcctgatgatgaatccgccattggaggcgttgaaggaagtgaagagaagagatta  8314700                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                     --------->ANAC58                                                                                     --------->ANAC46                                                                                     --------->ANAC58                                                                                  <---------ETT(2) <-                                                                               ------>ZmHOX2a(1)  <-- ------->ARR11(3)                                                       <---------DAG2            <-- --------ARR11(3)          --------->YAB1                               <----------DOF2           --- ------>RVE1(1)     ------->GAMYB*TSS    >>>>>>>>>TBF1                  ----------------------->TaNAC69(2)   atatctcttagtgatgctacaatcgccattgatactcagagaagaagaagatgagagttttagtagttttcaaactttatcctgtagacgacatcgttta  8314800                   --------->AHL20(1)         <----------DOF2    --------->ANAC55(2)    <---------ANAC58    <---------ANAC55(2)   --------->ZAT18    <---------ANAC46      <---------ZAT18    <---------ANAC58 <------------CBF --------ICU4      <---------AHL20(1)                                   <---------ANAC58 ------->ATHB12    --------->AHL20(2)                                   <---------ANAC58 ------->YAB1      <---------AHL20(2)                          --------->TOE2(3) -------HAHB4     --------->AHL20(2)                          --------->ZAT6 -------YAB1      <---------AHL20(2)                        <-----------GT1            <------------CBF -------ATHB12--------->ICU4   ---------->DOF2        ------->TEIL      --------->TOE2(3)      <----- ------>ICU4 --------->ANAC55(2)              --------->GLK1(2)--------->TOE1(3) ---------->DOF2   atcattacgggctttacttattaaattgggccctaaggccaggcccataatctatggacttgtaaccctaatttccttgatataaaagctattgttttca  8314900                                 ------>ZmHOX2a(2)                                <------ZmHOX2a(2)                               <-----------ARR10                               <---------ARR14(2)                               <---------ARR11(3)                               --------->ARR14(2)                               --------->ARR11(3)                               <---------ARR14(3)                               <---------AGP1                               --------->AGP1      <---------LBD16                               --------->ARR14(3) <---------ANAC46                              <---------CCA1(2) --------->MYB52(1)                             ----------->ARR10 ----------->HVH21                  --------->At4g35610                    --------->ANAC58         --------->TOE2(3)                  --------->YAB1             <---------------AGL15           --------->TOE1(3)         <---------ZAT6             *TSS   --------->ANAC58        ----------------->AGL1--------->TOE2(3) ------GT1   --------------->AGL15  <---------ANAC46              --------->TOE1(3)   ctctctgcgttttttctcaaacaagaaaatgcagatcttcgtgaaaaccctaacggggaagacaataaccttagaggtagaatcatcagacacaatcgac  8315000                                            --------->At4g35610                      --------->ANAC58     --------->ANAC58                 --------->ANAC46          --------->ANAC58             --------->CCA1(2)           <------ZmHOX2a(2)             <------ZmHOX2a(2)          <---------ARR14(2)     --------->LBD16            <---------ARR11(3)          --------->ARR14(2)    --------->LBD16            --------->ARR14(2)      <---------LBD16          <---------LBD16            <---------ARR14(2)     --------->MYB52(1)   ------>ZmHOX2a(2)            --------->ARR11(3)    <---------ALFIN1    --------->ARR11(3)                     <-------           --------->GLK1(1)  --------->GLK1(1)  <---------MYB46(3)                          --------          ----------->ARR10  <---------GLK1(1)--------->MYB52(1)<------NtERF2           --------->ZAT6   ---------->DOF2    --------->ANAC58--------->LBD16 <---------ARR11(3)               --------->ZAT18   aatgtgaaagcgaagatccaagacaaggaaggaatcccaccggatcagcaacggttgatcttcgccggaaaacaattggaagatggaagaacactagctg  8315100                                                                                       --------->TOE1(2)                                                                                       --------->TOE2(3)                                                                                       --------->TOE2(2)                  ----------->HVH21                             <------ZmHOX2a(1)--------->ANAC46           ---------->DOF2                           <-------TEIL                --------->ANAC58         --------->LBD16  --------->ATHB12          --------->ALFIN1             --------->ANAC58        <---------HSFB2a(2)    <------MYB46(1)   --------->ALFIN1             <-------TEIL        --------->HSFB2a(2)    <------MYB83      <---------------AtSPL8   --------------->AtSPL3 --At4g35610      <---------WRKY38(1)            <---------DEAR3(1)       <---------------AtSPL8 ->At4g35610      <---------DEAR3(1)            <------ZmHOX2a(1)   >>>>>>>>>TBF1--------->ANAC55(1)   attacaacatccagaaagagtcgacgcttcatttggttctacgtctgagaggaggtgcgaagaagaggaagaagaagacgtacacgaaacctaagaagat  8315200  Previous    Next  AGI:  At1g23400.1    Description:  ATCAF2/CAF2 (ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2). Identical to CRS2-associated factor 2, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9LDA9); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66095.1); contains InterPro domain CRS1/YhbY (InterPro:IPR001890) Range:  from: 8312065    to: 8314733    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g23410.1    Description:  ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA). Identical to 40S ribosomal protein S27a-1 (UBQ15) [Arabidopsis Thaliana] (GB:P59271;GB:Q29PZ3;GB:Q9LDJ2); similar to UBQ6 (ubiquitin 6), protein binding [Arabidopsis thaliana] (TAIR:AT2G47110.1); similar to UBQ5 (UBIQUITIN 5), protein binding [Arabidopsis thaliana] (TAIR:AT3G62250.1); similar to ubiquitin extension protein [Lupinus albus] (GB:CAA80334.1); similar to ubiquitin extension protein [Lupinus albus] (GB:CAA80333.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Ribosomal protein S27a; (InterPro:IPR002906) Range:  from: 8314913    to: 8315520    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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