Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             --------->ANAC58                      <----------DOF2                                      --------->ANAC55(2)                    ------>MYB83                            ----------->RAV1(1)                    ------>MYB46(1)                        --------->ANAC46--------->ANAC58     <----                 --------->MYB46(3)                <---------ALFIN1        <---------ANAC55(2)=======           <---------At4g35610          --------->ANAC58 <---------HSFB2a(2)                  -------           --------->At4g35610          --------->ANAC58 --------->HSFB2a(2)         <----------DOF2           <-------GAMYB       --------->CCA1(2)<-----------GT1     <---------ATHB12 <---------DAG2   cataaaccttgccagttgaaccaactttctcagataagagaaacgctaaatcaccacttccacaacacaaatcaagaacgtaatctcctttttttgctct  8296500                                    --------->ARR11(3)                  <---------------AGL15                                           --------->ANAC58        --------->YAB1            <---------ZAT6                                  --------->ANAC58       <---------ATHB12 --------->YAB1                                            --------->ANAC46 <-----------HVH21--------------->AGL15                                          ------>MYB83 -----YAB1       ----------------->AGL2                                          ------>MYB46(1) ==================================MADS_MADS    --------->ANAC46               --------->MYB46(3) -------->AGL15  ----------------->AGL3  --------->YAB1          ----------->GT1<---------ALFIN1   aattgtcaaatcaaaacaaaccaaaatcagaaaatagagataatcaaaacacagaacatagactgagatgtaatactcttacccactccatgagacagcc  8296600                          --------->At4g35610                 <---------ANAC58                 <---------ANAC58                --------->ZAT2        --------->WOX13(1)                                            -                <---------ZAT2      <------ZmHOX2a(2)                                            ----         <---------ARR14(2)        <---------ARR11(3)                                   --------->ANAC58         --------->ARR14(2)--------->TOE1(3)     ---------->DOF2       <---------YAB1   --------->ANAC58   <-----------GT1 ------>NtERF2   --------->ARR11(3)               <---------YAB1 <------NtERF2<----   atgtttttccaaattcgatgctggcctaagcttaagagatcattcaactacaaaagcatataagaagacgatgatttttgtagtcgggacaagttagagg  8296700                                                                               --------->MYB52(2)                                                                               <---------MYB46(3)                                                                           <---------ANAC58                                        --------->YAB1                     <---------ANAC58                                       <---------TOE2(3)               <---------LBD16                                       <---------YAB1                <---------ARR14(2)                                   --------->TOE2(3)                 --------->ARR14(2)     --------->CCA1(2)            --------->YAB1                     --------->GLK1(2) ---------->GT1                   <---------ICU4           <-------GAMYB --------->LBD16            < ------>DOF2                     <---------ATHB12         <---------MYB46(3)  <-------TEIL     <----- --ZmHOX2a(1)          <---------WOX13(1)                <---------RAP2.6(2)<---------SPL7  <--------   aaaggagataagagagagagaagagattgatgtcaaacattatcgtaaactggagcaatgcggttgaagagaatccggcgttcgttcgagcattttacta  8296800                                                                           <------NtERF2                                                                          ------>NtERF2                                                                          <---------RAP2.6(3)                                                                         --------->ANAC46                                                                         >>>>>>>>>AtERF-5                                                                         --------->RAP2.3(2)                                                                         --------->RAP2.6(2)                                                                         --------->RAP2.3(3)                                                                         --------->DREB2C(2)                                                                         >>>>>>>>>AtERF-7                                                                         --------->RRTF1(2)                                                                         --------->ANAC58                                                                         --------->ANAC58                                                                         >>>>>>>>>AtERF-4                                                                         >>>>>>>>>AtERF-2                                                                         >>>>>>>>>AtERF-1                                                                         >>>>>>>>>AtERF-3                                                                         --------->RRTF1(3)                                                                         --------->ATERF1(2)                          --------->LBD16                                --------->DEAR3(1)                        <---------LBD16                                 --------->ERF1               --------->HSFB2a(2)                                      --------->RRTF1(1)       ----              ------>ZmHOX2a(2)          ---------->DOF2                --------->RAP2.3(1)<------MYB46(1)              <---------LBD16      <---------LBD16                      --------->ATERF1(1)<------MYB83             <------ZmHOX2a(2)  <----------DOF2                        <---------At4g35610 <---------MYB46(3)      <-----------HVH21<---------At5g28300  <-----------HVH21         <---------ARR14(2)   <---------DEAR3(2)     --------->ANAC46 <-----------GT1  ----------->HVH21          --------->REM1(2)       <---------AtMYB61 ---------MYB52(1) ---------->TaMYB80--------->LBD16       <---------ARR14(2)            <---------MYB52(1) ------GT1  --------->ARR14(2) <---------ANAC58    <------ZmHOX2a(1)  --------->ARR14(2)<-------GAMYB ---GT1     <---------ARR14(2) <---------ANAC58 <-----------RAV1(2) ----------->ARR10  <---------MYB46(3)   ccgttctccgtcgcgatcgggaatttaccgggtgctttccggtgaaagtcacaggagagacgataccgagtagagccgccattttttggccgttggttca  8296900                                                                                    --------->YAB1  -                                                                                    <------ZmHOX2a(1)                                                                                  <---------TOE2(3) -                                                                                 --------->YAB1     -        *TSS                         ---------->DOF2                            <---------ATHB12   --   --------->YAB1            --------->ARR14(2)                             ------------>CBF       --  <------ZmHOX2a(2)          <------------CBF                              <-----------------AG    -- <---------ARR11(3)          <---------ARR14(2)                     <----------DOF2----------->GT1<-- --------->ARR11(3)      <---------LBD16                  <------------CBF ========================== ----->ANAC46     <---------YAB1----------->GT1         <---------YAB1     <-----------------AGL1----   cacgatcatgttgttttgttccgattactcggattggataaaagtctggtttcagtttaatattgggccgattttaggcccaataaggataatttgaaac  8297000          <---------AHL20(2) -------->ANAC46         <------MYB83 -------->ANAC58         <------MYB46(1) -------->ANAC58       <--------P                     <---------STY1(2) ---->MYB46(1)        <-------GAMYB     <---------HSFB2a(1)               --------->REM1(1)     ----- ------>P --------->AHL20(2)      --------->ZAT18     --------->STY1(2) --------------->AGL15  ------ ---->MYB83          --------->ATHB12   --------->HSFB2a(1)             <---------------AGL15  <----- -------ALFIN1       <---------MYB46(3) --------->HSFC1(2)       <----------DOF2         ------->TEIL =======================================================================================MADS_MADS ----->MYB46(3)     <---------AtMYB61   <---------HSFC1(2)--------->At4g35610            <-------TEIL   ccaccccaaaatttaaacagagatggttggattatgggcacaaggttccaattgctagatagctaaacttttggctacaattagcaaaatgtacatgatg  8297100                                                                    <---------YAB1                                                                  --------->AHL20(2)                                                                  <---------ICU4                                                                  --------->ATHB51                                                                  <---------AHL20(2)                                                                 --------->ICU4                                                                 <---------YAB1                                                               --------->YAB1                                                              <---------YAB1                                                              <---------AHL20(2)                                                           <---------AHL20(2)                                                       <---------RVE1(1)                        --------->AHL20(2)             <---------CCA1(1)    ----------->GT1     <---------AHL20(2)            <---------ARR11(3) ---->ATHB12     --------->GLK1(2)                    --------->ARR11(3) --->ICU4   ---------->DOF2                           <---------AHL20(1)                         <--- ----YAB1  --------->AHL20(2)   <---------ZAT6  <-----------GT1<---------ICU4       ----------->GT1   attaaactgtcaataaaagaatgtgtttaatttagtgtgatttacacaaataacaagatattttataattatttttgaaaaacacatagttaataaacaa  8297200                                                  ---------->DOF2                                               --------->At5g28300           <----------ID1    <-----                                              ----------->GT1           --------->LBD16       <------      ------>MYB46(1)                        ----------->GT1          <---------LBD16       <--------      ------>MYB83    <---------MYB46(3) --------->YAB1               <-------TEIL     ----------->GT1 --------ARR10    <---------YAB1     --------------->AGL15          <---------SPL7---------->DOF2   <   atctaacctatctaagtattttgtttgttcaacgttttgccaataagagggtaaaagctatatcacgagaggtccggagaagacaaaagaggttattttt  8297300             ----------->GT1                                       <-------TEIL <---------ANAC58          --------->YAB1                                          <------ZmHOX2a(2)          -------->HAHB4                                         <---------ARR14(2) <---------At5g28300                                             --------->AGP1 <---------ANAC58 ----YAB1<---------YAB1                                          --------->ARR11(3)                 < ---AHL20(2) <---------ICU4    <---------ANAC58                  --------->ARR14(2)              <--- -YAB1 --------->YAB1          <---------ANAC58                  <---------ARR11(3)           <------ -----------GT1    ---------->DOF2                         <---------ZAT6       <---------ANAC46<----   attcaccgataataatagttacaaagcattttgacttgttccttctactacatgtgagtgagtgtaagatccatttcatgtgtcgtccatgcttcactct  8297400  Previous    Next  AGI:  At1g23360.1    Description:  UbiE/COQ5 methyltransferase family protein. similar to UbiE/COQ5 methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT5G57300.2); similar to UbiE/COQ5 methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT5G57300.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66117.1); contains InterPro domain UbiE/COQ5 methyltransferase; (InterPro:IPR004033) Range:  from: 8295174    to: 8296908    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g23380.1    Description:  KNAT6 (Knotted-like Arabidopsis thaliana 6); DNA binding / transcription factor. Identical to Homeobox protein knotted-1-like 6 (KNAT6) [Arabidopsis Thaliana] (GB:Q84JS6;GB:Q948K0;GB:Q9LQD4;GB:Q9LR21); similar to KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2), transcription factor [Arabidopsis thaliana] (TAIR:AT1G70510.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66111.1); contains InterPro domain KNOX1; (InterPro:IPR005540); contains InterPro domain ELK; (InterPro:IPR005539); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterP Range:  from: 8297280    to: 8302640    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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