Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                <------                                                                                              <------                                          ---------->DOF2 <------ZmHOX2a(1)             <---------ZAT14 -------ID1              --------->At4g35610 <---------At4g35610                        --------->ZAT14 ----------AtSPL8        <---------At4g35610 --------->At4g35610    <-------TEIL    ------->TEIL ->DOF2      <---------ATHB12     --------->YAB1         ----------->GT1         --------->AtLEC2   gaacaaaacaaacccatcaacaaattgagctacaaatgaaaattgaaagctaacaagtgaggataaaaaatacatacttggccatgtaactacagtgctt  8262600                     --------->TOE2(3)                  <-----------GT1            ----------->HVH21        <---------ANAC58                   --------->LBD16                                  <--------        <---------ANAC58                  --------->LBD16                     <---------ANAC58        --------->At4g35610              <---------LBD16                      <---------ANAC46        <---------bZIP60(2)          <----------DOF2           --------->MYB52(1)       <----------DOF2 ---ANAC58 ------>MYB46(1)        ------->TEIL                 ---------->DOF2<---------ANAC58     <- ---ANAC58 ------>MYB83     <-----------RAV1(1)     ----------->GT1        <----------DOF2  <--------   gtgcctaatgacctgccatataacctcatcgtgttgcatctttcccggtgaagcttgaaaatagctaaagggtttagctttcgggcgagactttagggtt  8262700                                                  ------->GAMYB                                          --------->DEAR3(1)                                         --------->ATERF1(1)                                         <------NtERF2                                        <---------RAP2.3(1)                                        ------>NtERF2                                        <---------ATERF1(1)                                       <---------DEAR3(1)                                      <---------ABI4(2)                                      --------->RAP2.3(1)                                      <------NtERF2  <---------ETT(2)                                      --------->ATERF1(1)                                     <---------RAP2.3(1)                                     <---------ORA47(2)                                     <---------DEAR4(2)                                    <---------RRTF1(3)                                    <---------RAP2.3(2)                                    <---------RAP2.3(3)                                    <---------DEAR3(1) <------NtERF2                                   <---------ORA47(1)<---------ANAC46                                   --------->RAP2.6(3) <---------------------WRI1                                  ==================HOX2a_HOX2a                                  <------ZmHOX2a(1)<-----------HVH21                            <-----------HVH21     <-----------RAV1(1)        ----------->GT1                         --------->ZAT2--------->DEAR3(1)                    <---------MYB46(3)                         <---------At4g35610     <------------AtMYB77       --------->ALFIN1                        --------->GLK1(2)--------->RAP2.3(1)              <---------ANAC46    <---------ZAT14 ================================HOX2a_HOX2a           <---------bZIP60(2) -TOE1(3)           <------ZmHOX2a(1)<---------ATERF1(1)     *TSS       <---------ZAT14 --------YAB1       <---------------------WRI1  --------->At4g35610     --------->ZAT14 -TOE2(3) ---------->DOF2--------->At4g35610 <------ZmHOX2a(2)     ---------->DOF2                <--   tatgagtgaagaaaaagaagaaggagaagctgtcaaggacggcgccgatcaactgtcgtcgaaaaactcaaaagtgaagtggttaactaaacctgatatt  8262800                                                                      <---------YAB1                                                                    -------->ATHB1                                             ----------->RAV1(2)   <---------AHL20(2)                              <---------AHL20(2)                   <---------ATHB51                             --------->AHL20(1)                    --------->ICU4                             --------->AHL20(2)         <------------CBF                             <---------AHL20(1)        --------->ATHB12 <---------AHL20(2)                        ------------>CBF   <-----------GT1  <----------ID1---------->DOF2        <---------AHL20(2)   <---------AHL20(2)        --------->ATHB51--------->AHL20(2)   <-------TEIL    ---------->DOF2   --------->TOE2(3)<---------YAB1<---------ICU4---------->DOF2 -------TOE2(3)  <------NtERF2--------->AHL20(2)  ----------->GT1  --------->AHL20(2) ------------>CBF   agggattcatataatgggcctcatagcccaatttaataacataaataacctgtggtataattgggccaaattattaaaaagcccaaaagacaatacacta  8262900                                                                                 ------>ZmHOX2a(2)                                                                                <------ZmHOX2a(2)   -                                                                                --------->CCA1(2)  <-                                ===============================HOX2a_HOX2a     <---------ARR14(2)  --                                ------>ZmHOX2a(1)                              <---------ARR11(3) ---                            <---------ARR14(2)          <------ZmHOX2a(2)      --------->ARR14(2) <--                       --------->At4g35610  <-----------GT1                    --------->ARR11(3)<---                    <---------At4g35610 ----------->TBP<---------ARR11(3)      <---------AGP1    ----                    <---------ZAT2      <---------AHL20(2)                     --------->AGP1   -----                    --------->ZAT2    ----------->TBP  --------->ARR11(3)     <---------CCA1(2) -----          --------->LBD16   --------->ARR14(2)   <----------DOF2         *TSS----------->ARR10  <----   tctctgtttctccgaaaaccctagctgctaaatcctctctatataaaaaccctttaagatcatttctggttcaaaaccctagatctgatactaaaatggc  8263000                                           ----------->HVH21                                           --------->LBD16                                          <---------ANAC46                                          --------->DEAR3(1)                                         --------->ATERF1(1)                                         <---------LBD16                                         <------NtERF2                                        ------>NtERF2                                       --------->DEAR3(1)                                      --------->ATERF1(1)                                      --------->At4g35610                                      <------NtERF2                                      <---------At4g35610                                     <---------ATERF1(1)                                    ---------->CDC5                                    <---------WRKY12                                   --------->TGA2(2)                                  <-----------TGA1                                  <-----------HVH21                                 --------->O2<---------ARR14(2)                                 <---------O2--------->ARR14(2)                                 --------->bZIP60(2)                                 --------->ANAC55(2)   <-------GAMYB                 --------->ANAC58   ========================================MYC_MYB  <---------ANAC46               <---------bZIP60(1)                                              ===  <---------DEAR3(1)             --------->bZIP60(1)                                              === <------NtERF2                   <---------TGA1a                       --------->ANAC58        <----- ----->NtERF2                    --------->TGA1a                       --------->ANAC58   <---------ARR14(2) --------DEAR3(1)                <---------ANAC55(2)                 <---------MYB52(1)   --------->ARR14(2) ------->DEAR3(1)                --------->ANAC58              <---------ABI4(2)     <---------ANAC46 ------>ATERF1(1)                ==============MYC_MYB        --------->ANAC58       <---------ANAC58 ----NtERF2                      --------->ANAC46      --------->ARR14(2)            <---------ANAC58 ------ATERF1(1)                <-----------STF1       ------->TEIL <---------SPL7  --------->ALFIN1 -->NtERF2>>>>>>>>>TBF1      <-----------HVH21         --------->MYB52(1)      --------->LBD16------- ---->ETT(2)               xxxxxxxxxxxxxxxxx>smallRNA(fl3)    --------->ANAC58--------->LBD16-------- ------>HVH21     =========================bZIP_DOF------->TEIL--------->MYB46(3)<---------AtMYB61<-- -----DEAR3(1)    ---------->DOF2--------->ANAC55(1)   <---------ARR14(2)    <---------LBD16 --------   gacggcgttgaagaagaacagaaagaagagaggtcacgtcagcgccggacatggacgtatcggtaagcaccgtaagcatcccggaggtcgtggaaacgca  8263100                               --------->ANAC58                           <---------HSFB2a(2)                           --------->HSFB2a(2)                      ------>ZmHOX2a(1)                    ------>ZmHOX2a(2)                   <------ZmHOX2a(2)                  --------->ARR14(3)                                                         --------                  --------->ARR11(3)                                                ----------->GT1                  --------->ARR14(2)                                            <---------HSFC1(2) =========================HOX2a_HOX2a              --------->HSFB2a(2)          --------->HSFC1(2) ==========================HOX2a_HOX2a             <---------HSFB2a(2)         --------->ANAC58 ------RAV1(2)    <---------ARR11(3)     --------->LBD16    <------MYB83       --------->ANAC58 -->TOE1(2)       <---------ARR14(3)    <-----------RAV1(2) <------MYB46(1)--------->HSFB2a(2) ->ANAC58         <---------ARR14(2)  ------>MYB83<---------LBD16          <---------HSFB2a(2) ----ZmHOX2a(1)  <------ZmHOX2a(1)    ------>MYB46(1) ---------->DOF2  --------->GLK1(1)     <------- ->ANAC58   <---------ALFIN1   --------->ANAC58  <---------LBD16  <---------TOE2(3)<-------TEIL <----   ggaggtatgcatcaccacaggatcctcttcgacaagtaccatccaggttacttcgggaaagttggtatgaggtatttccacaagcttcgtaacaagttct  8263200                                                 --------->REM1(2)                                                ----------->HVH21                            --------                                              <---------TGA1a                                <-------                                              =========================================MYC_MYB                                              --------->O2                                -----------                                              <---------ANAC55(2)                --------->WRKY38(1)                                              <---------ANAC46                   --------->WRKY12       --------->YAB1--------->ANAC58         <---------O2                      <---------MYB52(1)      <---------ATHB12                  ------>ZmHOX2a(1)                     <---------ANAC58 ----------------->AGL1         --------->ANAC55(2)                           <---------ANAC46   <--- ->ARR11(3)          --------->ANAC58   --------->LBD16                       <---------ANAC58   ---- --ARR11(3)  ----------->RAV1(2)<---------ANAC55(2)                 --------->YAB1   ------>ZmHOX2a(2) ------DOF2 ------->TEIL    <-----------HVH21<-----------------------TaNAC69(2)<-------GAMYB --------   tttgcccaatcgtgaacctggacaagctatggtcacttgttcctgaagacgtgaaggcgaaatcgagcaaggataatgttccgttgatcgatgtgacgca  8263300                          <-----------HVH21                                       <---------At4g35610                         ----------->GT1                                          <---------ZAT2 ->ANAC58               --------->DAG2                                            <---------ZAT14 --bZIP60(2)          ---------->DOF2                                             --------->At4g35610 >HVH21           <---------LBD16              <---------DAG2                 --------->ZAT6 ------ZAT2      <---------ANAC46         --------->MYB46(3)            --------->ZAT6              < ----->ZAT2<---------TOE1(3)      <---------ANAC58                   <---------CCA1(2)            <-- ->ANAC58  <---------TOE2(3)      <---------ANAC58  <-------GAMYB<---------TOE1(3)--------->ZAT2  <--   gcatggtttcttcaaggttttggggaaaggtcatttgcctgagaacaaacctttcgttgtgaaggctaagcttatctctaagactgctgagaagaagatt  8263400              <-----------RAV1(1)            <---------At4g35610         <---------MYB46(3)        <---------DEAR3(1)        <---------AtMYB61        --------->ALFIN1        <-----------RAV1(1)     --------->ALFIN1                                           <---------AHL20(2)   --------->ZAT2                                              <---------AHL20(2)   <---------ZAT2                                              --------->AHL20(2)        <-----------RAV1(1)   --------->At4g35610                                         --------->AHL20(1)      <----------DOF2   <---------At4g35610                                         <---------AHL20(1)    --------->At4g35610 ------ZmHOX2a(1)                                          --------->AHL20(2)        <---------ZAT2 -------TOE1(3)                                        <----------DOF2               <---------At4g35610 -------TOE2(3)<-------GAMYB             <-----------GT1   <---------AHL20(2)        --------->ZAT2   aaggaagctggtggtgctgttgttctcactgcttagttttttttttcaattcagtctctttttaatttatttcatgttattgaactcagctttgttggat  8263500  Previous    Next  AGI:  At1g23280.1    Description:  MAK16 protein-related. similar to unnamed protein product [Vitis vinifera] (GB:CAO42990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64250.1); contains InterPro domain Mak16 protein (InterPro:IPR006958) Range:  from: 8260854    to: 8262761    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g23290.1    Description:  RPL27A (RIBOSOMAL PROTEIN L27A); structural constituent of ribosome. Identical to 60S ribosomal protein L27a-2 (RPL27AB) [Arabidopsis Thaliana] (GB:Q9LR33); similar to 60S ribosomal protein L27A (RPL27aC) [Arabidopsis thaliana] (TAIR:AT1G70600.1); similar to ribosomal large subunit structural protein [Brassica juncea] (GB:ABM30196.1); contains InterPro domain Ribosomal protein L15; (InterPro:IPR001196) Range:  from: 8262973    to: 8263576    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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