Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       --------->TOE2(3)                   ---------->ID1                  <-----------GT1   ------>ZmHOX2a(1)          <---------RAP2.6(3)  <----------DOF2                            --------->AtLEC2       --------->ZAT14    <---------MYB59       ----------->RAV1(1)  <-----------GT1 <---------DAG2       <---------ZAT14------>ZmHOX2a(1)------>ZmHOX2a(1)  ----------->RAV1(1)        <----------DOF2   tttctccaatgcagtcattttttccttatctaactttcctcctacataaacaacataatcccacaaatatgtttccatgcatagaccctttttcgactca  8254200                                                                                 --------->ARR11(3)                                       <---------AHL20(2)      <----------DOF2   <---------ARR11(3)                                      --------->AHL20(2)      <---------DAG2    <---------CCA1(2)                                 <---------TOE2(3)   --------->CCA1(2)       --------->TOE2(3)                      --------------->AGL15         <---------AHL20(1)      --------->ANAC58                      <---------------AGL15         --------->AHL20(1)      --------->ANAC55(1)                     ----------------->AG---------->DOF2   <------ZmHOX2a(1)--------->ANAC55(2)                     ----------------->AGL1        --------->AHL20(2)       --------->ANAC46                     ----------------->AGL2      --------->AHL20(2)         --------->ANAC58  <------                     ----------------->AGL3    --------->AHL20(2)           <---------ANAC55(2)   caaaaacaaaaacaaaaaaacattccaaaaatgttaagaatttaaaagaaaaaatatataaggaccttttcaacctatacgtaaatcttatgcatacttt  8254300                                                        <---------AHL20(2)                                                       --------->AHL20(2)                                                       <---------AHL20(2)                          --                                                       <---------AHL20(1)                          --                                                       --------->AHL20(1)                    --------                                                      --------->AHL20(2)                    ------->MYC3                      -------->P                      <---------AHL20(2)                <-------TEIL <---------YAB1      --------->WOX13(1)  --------->AHL20(2)                 --------->AtLEC2<-------MYC3 ----DOF2   ------->TEIL------->GAMYB    <---------AHL20(2)      --------->DAG2     <---------ATHB12   gttattcttatatgtatatatatcaaccaagttatatgcatatttaaattttctaaattaatttgaaaaattggagccatgctcaaatgatacatgtggg  8254400                         <----------DOF2                         <---------DAG2                     --------->ZAT14                                                   <---------ARR11(3)           <---------ANAC46                                                            --------->ARR11(3)           <---------ANAC58                                                            --------->AHL20(1) ------->ANAC58     <---------DAG2             --------->TOE2(3)                       <---------AHL20(1) ------->ANAC58     <----------DOF2            --------->TOE1(3)      <---------At4g35610 ->ALFIN1  <---------ANAC58          <------ZmHOX2a(1)                --------->At4g35610   catgctaaatgggtcgtgaacactttacttttgggtttaggagacttagccttagaggctagcgctactgtctgatgagacatgagaaatatatcacaga  8254500                                   <----------DOF2                                 --------->ANAC55(2)                            <-----------GT1                                        <---------ANAC55(2)                            --------->YAB1                                        --------->MYB52(2)                           <---------YAB1                                     ----------->GT1                         <---------ICU4            <------ZmHOX2a(1)       ------------>MYB.PH3(1)                         --------->YAB1            =========================HOX2a_HOX2a    <---------ANAC58               --------->ZAT18  --------->ANAC58 <---------TOE1(3)       ---------->DOF2   <---------ANAC58               --------->ZAT14  --------->ANAC58 <---------TOE2(3)   ------>ZmHOX2a(2)   <---------AHL20(2)               <---------ZAT14 XXXXXXXXXXXXXXXXXXXX>MIR844*  --------->AHL20(2) <---------MYB52(1) <-  <---------At4g35610   --------->ICU4 <---------YAB1        <---------AHL20(2)<---------RAP2.6(3) --   ttggagatgagagtgagaacactgaaattatcacaagctttcttattagtttaggataaacatataaatgatcgaagaagccgttacttattttcttggt  8254600                        --------->ALFIN1                      <---------ANAC58                      <------MYB83                      <---------ANAC55(2)                      <------MYB46(1)                      <---------ANAC58                      <---------ANAC55(1)                      --------->ANAC55(2)                      <---------ANAC46                     --------->MYB111(2)                     --------->MYB46(2)                     --------->MYB59                            <------ZmHOX2a(2)                     --------->MYB52(2)                     <-------TEIL --------->DAG2                 <---------ZAT6  --------->MYB52(2)        --------->ARR14(1)               <------------CBF<---------MYB52(1)          --------->CCA1(2)              *TSS   --------->MYB111(1)                  <---------ARR14(2)           --------->ARR11(3)<---------ZAT6               --------->ARR14(2)                <--------          <---------CCA1(2)<---------ANAC46               --------->ARR11(1)                <-------- --------ANAC55(2)  <---------MYB55(1)                    <---------GLK1(2)        <---------TOE2(3) ------->ANAC55(2) <---------MYB52(1) <---------YAB1    <---------ATHB12---------->DOF2     <--------   tacttattttttatatctattgttaggtgttgtgttagttatacttatacataaaccaaagattcgatccaagataaagtcgatagaggtttttgtgtgt  8254700                                                <---------ANAC46                                                <---------ANAC58                                         --------->ANAC58                                         --------->ANAC46                                         --------->ANAC58                                      --------->ARR14(2)                                      <---------ARR14(2)          <------ZmHOX2a(2)             <----                                   <---------ANAC58              --------->ARR11(3)     <xxxxxxxxxxxx -ANAC58       <---------ANAC58    <---------ANAC46       <----------ID1  --------->ALFIN1     <----- -ANAC46       <---------ANAC58    <---------ANAC58     --------->YAB1---------->DOF2  <xxxxxxxxxxxxx -ANAC58       <---------ANAC46   <-------TEIL  <---------ANAC58 <---------ARR11(3)    <xxxxxxxxxxxxx   gtgtttgtatttatgtgtcttggacatgtattgacatgcgtagacgcattccttgttataacaacaagatcacaaagtgtgagactcttactgatttttt  8254800                                             --------->ANAC58                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             --------->ANAC55(1)                                             --------->ANAC46                                             --------->ANAC58                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             --------------->AtSPL8                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                          <---------REM1(2)                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                       <---------ANAC58                                       <---------ANAC58                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               <---------WOX13(1)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <---------AHL20(2)    <---------ANAC58            --------->AHL20(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <---------AHL20(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                            --           --------->AHL20(2)     <---------ANAC58   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <-        <---------AHL20(2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                            <---       <---------AHL20(2)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                            ----       --------->AHL20(2)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                           ------ -------GT1<---------AHL20(2)  <----------DOF2xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             <------- xxxxxxxxxsmallRNA(le3)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------GT1 --------->AHL20(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <----------DOF2          -------- xxxxxxxxxxsmallRNA(l2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)------>ZmHOX2a(1)--------->TOE2(3) xxxxxxxxxxsmallRNA(fl3) <-----------GT1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <---------YAB1<-----   cccctcttataaatttaattgacattataacccctttcttggcttacacggtactatctacttaaatcctctttatgtcatttattcttagctatatata  8254900         <---------AHL20(2)         --------->AHL20(2)       <---------AHL20(2)       --------->AHL20(2)     --------->AHL20(2)     <---------AHL20(2)   <---------AHL20(2)                                                          ----------->GT1   --------->AHL20(2)                                                       <---------At4g35610 --------->AHL20(2)                                                        --------->MYB52(2) <---------AHL20(2)                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ------->AHL20(2)                                                        <---------MYB52(1) --------AHL20(2)                                                        xxxxxxxxxxxxxxxx>smallRNA(i) ------AHL20(2)                                                         --------->TOE2(3) ----->AHL20(2)         --------->YAB1                                <---------YAB1 --->AHL20(2)          <---------YAB1                                 <---------TOE2(3) --AHL20(2)          --------->YAB1                                <---------AHL20(2) ->AHL20(2)          <---------ICU4                            --------->AHL20(2) ----AHL20(2)   <-----------------AGL3                         <---------AHL20(2)   tatatatatatatatatagctaaaaatgataacattttgtttctctagtttagaaattttagaatttaaattatcgttagatgataaaacgggcttatac  8255000                                                                                                 ----                            <----------DOF2                                                      <---                        <---------ZAT18                                                      --------                        --------->ZAT14                                                     ---------                        --------->ZAT18                                                   --------->YAB1                        <---------ZAT14                                                  <---------AHL20(2)                      --------------->AtSPL8                                            <---------AHL20(2)             --------->TOE2(3)   --------->YAB1                                         --------->AHL20(1)        <---------AHL20(2)  <---------DAG2             <-----------RAV1(1) <---------CCA1(2)<--------        --------->AHL20(2)------->TEIL          --------->ATHB12       ------>ZmHOX2a(2)<---------AHL20(1)     ------->TEIL    <---------ANAC46         <---------WOX13(1)<---------MYB46(3)      --------->AHL20(2)   aaccatgtattttaatctaaatgaagtgtactttttcataagtgtttgaatgattttttgttgttgttgttgatcgcatatttttgtcaatataatgatt  8255100  Previous    Next  AGI:  At1g23240.1    Description:  caleosin-related family protein. similar to caleosin-related family protein [Arabidopsis thaliana] (TAIR:AT1G70670.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42349.1); contains InterPro domain Caleosin related (InterPro:IPR007736) Range:  from: 8252704    to: 8254614    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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