Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            --------->ANAC58                          --------->ANAC58          --------->AtMYB61                          --------->ANAC46       --------->ANAC46                     --------->At4g35610         ------>MYB46(1)                     <---------At4g35610         ------>MYB83                     --------->ZAT2            <---------MYB59                     <---------ZAT2            --------->AtMYB61                         --------->YAB1              --------->WRKY12              ------>MYB46(1)                             <---------YAB1              --------->WRKY38(1)           ------>MYB83                              --------->YAB1           --------->ATHB12               --------->AtMYB61                          <---------AHL20(2) -------TEIL <---------WOX13(1)           <---------MYB59 --------->At5g28300     <---------ARR11(3) ---HVH21  <---------MYB46(3)   ----------->RAV1(1)--------->MYB46(3)             --------->AHL20(1)   agttcatggtccatggttgactcagctcatgccacaacattgaaccaaaccaaaccactcggtaaacttgtatagcctcttgtatatattatgatatata  8121900             ------->MYC2             ------->MYC4             <-------MYC3             <-------MYC4             <-------MYC2             ------->MYC3            <---------O2            <---------TGA1a            --------->O2            --------->TGA1a     --------->YAB1     --------->ATHB51     -------->HAHB4     <--------ATHB1     <---------ICU4     <--------HAHB4    --------->AHL20(2)    <---------ATHB51                                                                 <----------DOF2    --------->ICU4               <---------YAB1                                      <---------DAG2    <---------YAB1           ------->TEIL             <---------YAB1             ---------->ID1  --------->YAB1           <-------TEIL             <---------At4g35610       <---------AtMYB61 <---------ATHB12       --------->At4g35610  <-------TEIL  ----------->GT1  <----------DOF2 <---------ATHB51  ----------->GT1--------->ATHB12 <---------YAB1     --------->MYB52(1)   tcaataataattacacgtgtaatgtaagatgcattttgatttgaagatgcattatgctgatttgtaaaacataaacggctttggtccctttttagtgtgt  8122000                                ----------->GT1                                             <--------                       <---------ANAC55(1)                                              <---------AHL20(2)                       <---------ANAC58                                                 --------->AHL20(2)                       <---------ANAC46                                       --------->KAN4(2)   <--                     xxxxxxxxxxxxxxx>smallRNA(si3) --------->ICU4            --------->KAN4(1)    <--        <---------TOE2(3)     <---------ANAC46----------->GT1                <---------KAN4(1)-------        --------->DAG2 <---------ANAC58----------->GT1                      ------->TEIL--------->YAB1   ccgaatgaataaggtgttcaaaatagcgtgtgatttgtaatttgtaatttgtaattagtctgaaacgttgtatatatgaatattcttcaattatataaaa  8122100                                                   <---------ANAC46           <---------AHL20(1)                      <---------ANAC58           <---------ARR11(3)                      <---------ANAC58           --------->AHL20(1)       --------->AHL20(1) <---------PCF5   <----------DOF2                  <---------AHL20(2)--------->WRKY38(1)  <---------ANAC58                 --------->AHL20(2) --------->WRKY12                    <---------ANAC58  <---------ANAC58    <<<<<<<<<GATA-1     ---------->ID1            <-----------GT1  <---------ATHB51 -AHL20(2) --------->ARR11(3)  <---------YAB1 <---------DAG2        <---------AHL20(2)    <---------ANAC58 -------ANAC58       <-----------GT1<---------AHL20(1)--------->WRKY45               --------->AHL20(2) -------ANAC58     <---------AHL20(2)  --------------->AtSPL8 --------->ANAC58       <---------AHL20(2) --->DOF2 --------->AHL20(2)<----------DOF2   <----------DOF2 --------->ANAC58       <---------ATHB12   gcttgctttcaaatatatcaatttatctatcttttgattatattgtccctttttcgtggaccacaagtattaacttatctcatacaaataattcgtgctt  8122200              -------->ATHB1              --------->ATHB51              --------->ATHB12             <---------ATHB51             --------->AHL20(1)             <---------YAB1             --------->ICU4             <---------AHL20(2)          <---------YAB1         --------->AHL20(2)     <---------ZAT6     ----------->GT1   <---------ANAC58                                                                      --------->AHL20(2)   <---------ANAC58                                      <---------YAB1                  <---------AHL20(2)   <---------ANAC46                                    --------->YAB1                    --------->AHL20(1)   <------MYB83                                      <---------WOX13(1)                  <---------AHL20(1)   <------MYB46(1)                      <---------AHL20(2)                              <---------AHL20(2)  --------->MYB111(2)           <------------CBF    <------------CBF                    --------->AHL20(2)  --------->MYB46(2)       <---------WOX13(1)    --------->At5g28300             <-----------GT1  <---------AtMYB61      --------->ATHB12     <---------LBD16   --------->AtLEC2--------->AHL20(2)---   aagtttggtgttaaaattattgaaaattgatttacattgaatttttttcgcggtaattgataattcatgaaaatcgatgaaatttactaattttatttca  8122300                     <---------AHL20(1)                     <---------ARR11(3)            ---------->DOF2                                  <                     --------->ARR11(3)       --------->AHL20(1)                                    -          --------->AHL20(2)                  <---------AHL20(2)                                    <          <---------AHL20(1)                  --------->AHL20(2)                            <------ZmHOX2a(1)          --------->AHL20(1)             --------->AHL20(1)                             --------->ICU4          <---------AHL20(2)*TSS         --------->AHL20(2)                       <------ZmHOX2a(1)<-     ------------>CBF--------->AHL20(1)  <---------AHL20(2)                  <---------ANAC58      <- ---------->DOF2----------->GT1     --------->AHL20(2)                --------->ICU4 <------ZmHOX2a(1) ------>TOE2(3)----------->GT1      <---------AHL20(2)      <----------ID1   <---------ANAC58      --   cattaaagtcaataaaatgggaaaatatttgatgagaataaaataaaataaaataaagagaagggacgagaaatgaatagcttaggaggaattaggagtt  8122400                                                                                                    <                                                                                                   <-                                                                                                  ---                                                                                                 <---                                                                                                 ----                                                                                                -----                                                                                                <----                                                                                                -----                                                                                                <----                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                               <-----                                                                                             --------                                                                                             --------                                                                                             --------                                                                                             --------                                                                                            <--------                                                                                            ---------                                                                                            <--------                                                                                        --------->ARR14(2)                                                                                        --------->GLK1(2)                              ----------->HVH21                                         <---------ARR14(2)                              ----------->TGA1                                         --------->ARR14(2)                              <---------ATHB12                                         <---------ARR14(2)                          <------NtERF2                                            <------ZmHOX2a(2)-  <------NtERF2          <-----------HVH21                                      <------NtERF2-------- ------>NtERF2           ------>NtERF2                                         --------->LBD16 <----- <---------ATERF1(1)    <---------ANAC46                                      <---------ANAC58 <----- --------->LBD16       <------NtERF2 ------>NtERF2                         --------->ALFIN1<---------RAP2.3(2) ---------ATERF1(2)    --------->RAP2.3(1)                            <<<<<<<<<<<<<<<<<LFY<---------LBD16 -------->ATERF1(2)   <---------ATERF1(1)                 --------->SPL7--------->ZAT6 <---------GLK1(2) ---------DEAR3(1)    ------>NtERF2 --------->DEAR3(1)<---------------AtSPL8  <---------ANAC58------- --------ORA47(1)     <---------RAP2.3(1)             --------->DAG2  <-----------GT1 --------->At4g35610 --------LBD16   --------->SPL7--------->YAB1         <---------------AtSPL3  <---------ANAC46<------ ------->ATERF1(1)   <---------DEAR3(1)        <-------GAMYB --------->LBD16 <---------LBD16------>NtERF2   ggccggcgaattggagaagtacgacggcgtcaatgacgacgacggagagcgttagaaaggtaccgcaagttttaacagtggcgggatcagattccggcgc  8122500 --------->ZAT2 <---------At4g35610 <---------ZAT2 --------->At4g35610 ---------ARR14(2) -----NtERF2 ------>LBD16 ------DEAR3(1) ----->DEAR3(1) ---->ATERF1(1) --NtERF2 ---->RAP2.3(1) -----LBD16 ----ERF1                                 <---------ANAC58 >NtERF2                          <---------ZAT2 ----RAP2.6(1)                 --------->LBD16 ----RRTF1(1)                 --------->ANAC46                        <-----------HVH21 ->ERF1                      <---------ZAT14                      ------->GAMYB ->RRTF1(1)                  --------->ZAT18                      --------->ANAC46 ->RAP2.6(1)                 <---------LBD16                   <---------ARR14(2) ->ATERF1(1)                 <---------At4g35610               --------->ARR14(2) -RAP2.3(1)           ---------->DOF2     <---------ANAC46     --------->MYB52(1) >LBD16   ---------->DOF2  <---------DEAR3(1)               --------->YAB1 -ATERF1(1)        --------->TOE2(3)      <---------ANAC58<-----------TGA1 -------->ARR14(2) --------->TOE1(3)  ------->PIF5        --------->LBD16             <<<<<<<<<TAC1 ->RAP2.3(1)    ------>NtERF2--------->At4g35610   <---------ANAC58--------->ZAT14 <---------ZAT18 ----ATERF1(1)  <---------RAP2.6(3)   <-------PIF5 <---------ANAC58--------->LBD16 --------->ZAT14 ----RAP2.3(1) --------->RAP2.6(2)--------->ZAT2  <---------ZAT18--------->MYB46(3)<---------ZAT14 -->DEAR3(1)   --------->DEAR3(1) --------->At4g35610     <-----------HVH21 --------->ZAT14   ------- ---DEAR3(1)  --------->DEAR3(2)  <---------At4g35610    --------->ANAC55(2)<---------ZAT14 <------ZmHOX2a(1)   cggagctggaattcaagccgaccttaaagtctgcgcagctcgtggtgtgtattgcgcttccgtcataaccgcagtcactgctcagaacactcgaggagtt  8122600                                                                                                <----                                                                                              -------                                 <---------ZAT14                                --------->ARR11(3)                         <---------AHL20(2)             ----------->HVH21       <---------ARR11(3)                    --------->LBD16                 ------>ZmHOX2a(1)          <---------At4g35610                   --------->HSFB2a(2)      --------->ARR14(2)             <---------SPL7<---------YAB1                   <---------HSFB2a(2)      <---------ARR14(2)         --------->O2    --------->ATHB12                   --------->ANAC46   --------->At4g35610              <---------O2    --------->YAB1                  <---------LBD16--------->ZAT14<-----------HVH21--------->ARR14(2)   <---------YAB1 -->GLK1(1)      ------>ZmHOX2a(1)    <---------At4g35610        <---------ARR14(2)   --------->ICU4   caatctgttcatcttcttcctccggaatttatctctgaacagctcaaatccgtcctctctgacttcgaattcgacgtcgtaagctcttatgattagtgat  8122700                                                                                               <<<<<<                                                                                            <-------TEIL                                                                  <---------ANAC58         --------->ARR14(2)                                                                  <---------ANAC58         <---------ARR14(2)                                                                 --------->HSFB2a(1)    <---------TOE1(3)                                                                 --------->HSFC1(2)     <---------TOE2(3)     --------->ATHB12                                            <---------HSFC1(2)------>ZmHOX2a(2)   <---------WOX13(1)      --------->WOX13(1)     <---------At4g35610             <------ZmHOX2a(2) --------->ATHB12    <---------WOX13(1)           --------->At4g35610            --------->ARR11(3) -----YAB1         --------->ATHB12             <-----------RAV1(2)              <---------ARR11(3) -->ATHB12        <---------YAB1        --------->ICU4           <---------HSFB2a(1)<-------GAMYB   tagtgattgattactctcttatgattgatcaattagtgagtaatgaattctcaggtgaagactgggatgcttccttctactgagatcgttgaggttcttc  8122800  Previous    Next  AGI:  At1g22930.1    Description:  T-complex protein 11. similar to T-complex protein 11 [Arabidopsis thaliana] (TAIR:AT4G09150.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24647.1); similar to hypothetical protein OsI_015461 [Oryza sativa (indica cultivar-group)] (GB:EAY94228.1); similar to H0525C06.4 [Oryza sativa (indica cultivar-group)] (GB:CAH66841.1); contains InterPro domain T-complex 11 (InterPro:IPR008862) Range:  from: 8117328    to: 8122116    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g22940.1    Description:  TH1 (THIAMINE REQUIRING 1); catalytic/ phosphomethylpyrimidine kinase/ thiamin-phosphate diphosphorylase. similar to BTH1 [Brassica napus] (GB:AAC31298.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47024.1); similar to unknown [Populus trichocarpa] (GB:ABK95478.1); contains InterPro domain Thiamine monophosphate synthase; (InterPro:IPR003733); contains InterPro domain Phosphomethylpyrimidine kinase type-1 (InterPro:IPR013749); contains InterPro domain Phosphomethylpyrimidine kinase type-2; (InterPro:IPR004399); contains InterPro domain Aldolase-type TIM barrel; (InterPro:IPR013785) Range:  from: 8122328    to: 8125057    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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