Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     ------>MYB46(1)                                                                                   ------>MYB83                                                                              >>>>>>>>>>WRKY26                                                                              >>>>>>>>>>WRKY38                   <---------MYB46(3)                                <---------ANAC58                  <---------ATHB12                                   <---------ANAC46              <------ZmHOX2a(2)                                      <---------ANAC58    --------->CCA1(2)    --------->TOE2(3)                                          <------------AtMYB77-------->P   <---- ->AtMYB61   --------->ARR11(3)                                --------->MYB46(3) ----------->RAV1(1) ->TOE2(3)   <---------ARR11(3)     <---------WOX13(1)      --------->MYB46(3)>>>>>>>>>>WRKY43<------ >MYB46(3)--------->YAB1         <---------ATHB12   --------->YAB1<---------MYB52(1)    <---------ARR11(3)   actatacatcaataagatcaatggttcgcataccaatgaatgacacaagtacaattacaactacaaccgttgcttaaatttgaccaacaagatgtgagtt  8105200                                ------->TEIL                             <---------ANAC55(2)                             --------->ANAC55(2)          --------->AHL20(2)                     --------------->AtSPL8          <------ZmHOX2a(1)     <---------AHL20(2)      <-                     <---------------AtSPL8         ----------->GT1        --------->AHL20(2)  <-----                 <---------AHL20(2)                <---------TOE2(3)      --------->AHL20(2)  <------ -----MYB46(3)  --------->AHL20(2)       <---------HSFB2a(2)          <---------YAB1       ------>ZmHOX2a(1) -GAMYB         <---------AHL20(2)       --------->HSFB2a(2)        <-----------GT1    <-----------GT1   gttccaaaataacaaaaattaaatatgtactacgtatttagctcgagaaaaatgaggaaataaaacatttttatcatttaatttctaattttcctccttt  8105300                       <---------ATERF1(2)                       --------->ATERF1(2)                                                          -                      --------->DEAR3(2)                                                            <                      --------->RAP2.6(3)                                              <-----------TGA1                     ------->TEIL                                                      <-----------HVH21                     --------->MYB52(1)                                               --------->O2  -           <---------ICU4                                                             --------->TGA1a           --------->ATHB51                                                           <---------TGA1a           --------->ATHB12                                ------>NtERF2              --------->bZIP60(1)           -------->HAHB4                           --------->MYB52(1)                --------->ANAC46           <--------ATHB1                      --------->AHL20(2)                     <---------O2  -          <---------AHL20(2)<---------At4g35610--------->AHL20(1)            --------->ARR14(2)     <          --------->AHL20(2)<------NtERF2 --------->AHL20(2)                 <---------ARR14(2)     <      --------->AHL20(2)<-----------HVH21 <---------AHL20(2)                <----------TaMYB80 ------    <----------DOF2<---------SPL7         <---------AHL20(1)            --------->ANAC46       ------ ----------GT1   ------->TEIL        --------->AHL20(2)--------->ANAC46 --------->ANAC58   --------->ANAC58 ----MYB52(1)    --------------->AtSPL3   --------->AHL20(1) --------->TOE2(3)        <---------bZIP60(1) ----DOF2 <---------ATHB51<-----------RAV1(2)  <---------AHL20(2)       --------->ANAC58   --------->ANAC58   atttccctttaaataattgaacgtaccggcaggggataattcaataaaataaaatacccgatgcctcaattctcacgcatattcactcgcgtcacgacca  8105400         <---------ZAT2         --------->At4g35610         --------->ZAT2         <---------At4g35610   --------->TOE1(2)  ------>ZmHOX2a(2) <------ZmHOX2a(2) -------->ARR11(3)              --------->ANAC58 ---------ARR11(3)        --------->CCA1(2)           <-------GAMYB -------->ARR14(2)  <-----------HVH21        <-----------HVH21 -------->AGP1     <---------ANAC58         <---------ANAC46                                        - ---------ARR14(2) <---------ANAC46         <---------ANAC58                                        < ---------GLK1(2)  <---------ANAC58         <---------ANAC58                                      <-- --->AtMYB61      <------NtERF2 --------->ANAC58     --------->ALFIN1           <---------YAB1 ------ ----->RAV1(1)  <---------DEAR3(1)    --------->AHL20(2)         --------->ALFIN1            <-------   cagatccttggagctgaggctgcgtgagagacacgagcaaaaaaatgcgtcgagggtgttagataatgtgggcaatattgttatctttctccatataaca  8105500              <-----------GT1        <---------AHL20(2)      <---------YAB1    -------->ATHB1    -------->HAHB4    --------->ATHB51    <---------AHL20(2)    <---------ICU4    <--------HAHB4    --------->YAB1   --------->ICU4                                                      --------->TOE1(3)   <---------ATHB51                                                    --------->TOE2(3)   <---------YAB1                                                      ------->GAMYB --------->YAB1  <---------At4g35610                                 -------->P -------->AHL20(2)                                              --------->WOX13(1) ---------AHL20(2) <----------DOF2                            ------------>CBF --------DOF2<-----------GT1                              --------->ANAC55(2) --->ZAT6<---------YAB1                                   <---------ANAC55(2) *TSS            ------- ----GT1<---------AHL20(1)  <-----------GT1         <---------YAB1<---------ATHB12         <---------YAB1   ctttaattattattttttccgctttcattttttctcttccctcttcttcttgttctcattacatatcaatcaaccctaaaaaaaacttatcttatgaatc  8105600                   <----------DOF2         ------>ZmHOX2a(2)         ======================HOX2a_HOX2a        =======================HOX2a_HOX2a        <------ZmHOX2a(2)        <<<<<<<<<GATA-1        <<<<<<<<<GATA-4        <<<<<<<<<GATA-2        <<<<<<<<<GATA-3       --------->ARR14(2)       <---------AGP1       <---------ARR14(2)                     <-----------RAV1(1)       --------->ARR11(3)      <---------AHL20(2)       <---------ARR11(3)      --------->AHL20(2)<---------REM1(1) >TEIL<---------CCA1(2) ------>ZmHOX2a(1)  <----------DOF2             <-----------GT1   tattaagtagatctctaatctctttcctactatttatatagactccttttgttgtagcctacttcttgcatattaaccccttgtgtctctcacaatccca  8105700                                                                                                   <-                                                                                                 <---                                                                                      ----------->GT1                                                                                     ----------->GT1                                                                                =====================                                                                                ==============HOX2a_HOX2a                                   --------->ANAC58                             ------>ZmHOX2a(2)<---                                   --------->ANAC58                            ======================                                 --------->CCA1(2)                             ===============HOX2a_HOX2a                         <---------At4g35610                                   <------ZmHOX2a(2) <---                         --------->At4g35610     <-----------GT1             <---------GLK1(1)  <----              <---------ZAT6    <---------ARR11(3) --------->ZAT6       ---------->DOF2<------ZmHOX2a(1)   ctagtactgaaacatagagatagacttagctcaagataagctaatttgttttcactctaatatagagagagagagaaagagatcggagaggaaaaaatgg  8105800   <------ZmHOX2a(1)                --------->ALFIN1 -----NtERF2                  --------->ANAC46 ------ANAC58              <-------TEIL                        --------->ANAC58 =========HOX2a_HOX2a--------->ANAC58                 <---------ANAC58 ------ANAC46        --------->ANAC46                 <---------ANAC58 =========HOX2a_HOX2a--------->ANAC58           <------ZmHOX2a(1)      <------ZmHOX2a(1) ------ANAC58        --------->bZIP60(2)<-----------RAV1(1)  <---------ATERF1(1)              <------ -----LBD16     <----------ARF1   <XXXXXXXXXXXXXXXXXXXXMIR2934 --------->ANAC58          <----------DOF2   cgggaggaatagggctgggagacacgacatacacgaaggtgtttgtgggaggattagcttgggagacgcataaggagacgatgaagaagcactttgagca  8105900                                                                 --------------->AtSPL8                                                                 <---------------AtSPL3                                                --------->ARR11(3)   --------->SPL7                                             <--------P          --------------->AtSPL3                                            <---------MYB52(1)   <-------TEIL --------->ANAC46                                   --------->ANAC58            <---------GLK1(2)                                   --------->ANAC58            <---------ARR14(2)           <---------HSFB2a(2)--------->DEAR4(1)--------->AGP1 --------->ARR14(2)           ------>ZmHOX2a(1)        --------->GLK1(2)     --------->DEAR3(1)--------->ARR14(2)   <---------TOE1(2)      ---------       --------->ARR11(3)     <---------ETT(1)  <---------ARR11(3)   <---------TOE2(2)      <--------       <---------ARR11(3)     ----------->HVH21 <---------ARR14(2) <---------SPL7          <---------       <---------GLK1(2)      --------->DREB2C(2)<------ZmHOX2a(2)<---------ANAC58         ----------      <---------RVE1(1)       --------->At1g77200--------->CCA1(2)<---------ANAC58         ----------     ----------->ARR10  --------->YAB1     --------->LBD16  --------->ANAC55(2)         ---------->ID1 ---At4g35610           <---------ICU4   <---------LBD16   <---------LBD16  <-----------GT1<---------   gtttggagagattttggaagccgtagtcatcaccgacaaggcctccggtagatccaagggctacggattcgtacgtttatacaaaaccttgttcctatat  8106000                                                                                          --------->At4g35610                                                                                          <---------At4g35610                                                                                          -----------                                                                                          --------->ANAC55(2)                                                                                          <---------ANAC55(2)            ------->TEIL                                                                <-----------RAV1(2) ---------->DOF2                                                                       <------ZmHOX2a(2) ------>AGL15                                                                         <-----------HVH21 -------AGL15                                <------ZmHOX2a(1)                --------->YAB1 --------AGL3                     ----------->GT1               ----------->GT1     ------>ZmHOX2a(2) ------->AGL2                 <---------AHL20(2)               <---------TOE2(3)<---------YAB1 ------->AGL3                --------->AHL20(2)               ---------->DOF2--------->ICU4         < --------AGL2         <---------ANAC46 ---------->DOF2   --------->AHL20(2)  <---------YAB1 ---------   gtagaaagagaatggatgttatttgtgtatattatatagttaaaagaggaatcaactaataaactaaagttaaatggtgatgatgatcgatcaggtgaca  8106100  Previous    Next  AGI:  At1g22910.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G33470.1); similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G33470.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN73746.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 8105578    to: 8108153    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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