Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         <-----------TGA1                                       <-----------HVH21                                      <---------ANAC58                                  <---------ANAC58                                  <---------ANAC58                                <---------MYB46(3)                               <---------AtMYB61   --------->WRKY18(1)                    <------ZmHOX2a(1) <---------ANAC58               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<<<<<<<<<WRKY18      >>>>>>>>>>GT-3b        --------->ALFIN1  ---------->DOF2       <-----------GT1   ----------->GT1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          --------------->AtSPL8    <-------- ---->DOF2 <-------TEIL<----------DOF2--------->ANAC46<---------TOE2(3)        <---------YAB1  ------   aggggaagaaaaatacattggaggactttaagtgtggtttgcgtcacaacaaagtcaaggatagatagattgaaccatattttgattcggttttaagaaa  7981300                                                 --------->TOE2(3)                                                --------->ZAT6                                              <-----------GT1                                            --------->AHL20(2)                                            <---------AHL20(2)                                        --------->AHL20(2)                                        <---------YAB1                                        <---------AHL20(2)                                       <---------AHL20(2)                                       --------->AHL20(2)                                       --------->AHL20(1)                   <---------AHL20(2)                                       <---------AHL20(1)      <---------AHL20(2)                   -                                  --------->AHL20(2)           --------->AHL20(2)           ---------   <---------AtLEC2               <---------AHL20(2)       --------->HSFB2a(2)            --------->ALFIN1 -TOE2(3)                    <---------AHL20(2)<---------TOE2(3)           --------->AHL20(2)     --- ---->DOF2        <---------TOE2(3)   --------->YAB1       <---------HSFB2a(2)<-----------GT1   -----   agtttgcatttcgatgtataaacgtttgcatttttttttaatataatttaacattagatttctaaaaaaatacaaaattttatcaattttaggtgtgaca  7981400                                                 --------->AHL20(1)                                                 <---------AHL20(1)                                                 <---------AHL20(2)                                                 --------->AHL20(2)                                                --------->AHL20(2)                                        <---------AHL20(2)                                        --------->AHL20(2)                                     --------->YAB1                                     <---------ICU4                                     --------->ATHB51                                     <--------HAHB4                                     <--------ATHB1                                     -------->HAHB4                                    <---------ATHB51                                    <---------ATHB12                                    --------->AHL20(2)                                    --------->ICU4                             --------->DAG2    <---------YAB1          <---------ICU4    ---------->DOF2  --------->YAB1 -------->AHL20(2)   <---------AHL20(1) --------->YAB1         <-----------HVH21                    - -->HVH21<---------YAB1   <---------AHL20(2)<---------YAB1  <---------ANAC58                       -- -------->GT1        --------->AHL20(1)<---------YAB1       <---------ANAC58                 -------- ----->DOF2   --------->AHL20(2)    <---------YAB1   <-----------GT1                   <-----------HVH21   aagtaaatttcatcattttaaaaaatattaaaaagctaataattatatcattatattacaaatcgtgtcacaaaaaacaaaaatcaacatgtcaaacatg  7981500                                                         <-----------GT1                                                     <---------AHL20(2)                                                     --------->AHL20(2)                  <---------ARR11(3)                                                 <---------AHL20(2)                      --------->ARR14(2)                                                 --------->AHL20(2)                      <---------ARR14(2)                                                 --------->AHL20(1)                      <-----------ARR10                                                 <---------AHL20(1)                      --------->ARR11(3)                                                --------->AHL20(2)                      <---------GLK1(1)   ----------->GT1                              <---------AHL20(2)                      <---------CCA1(2) -------->DAG2                               --------->AHL20(2)                  <---------ARR14(2) -------->DOF2                              <---------AHL20(2)                   --------->ARR14(2) ->YAB1     --------->YAB1                  --------->AHL20(2)             <-----------GT1     ------   aaaaagcgttacaagaatagtttttgctcaattgctaaacaaacaaataaataaattatataccatacatttcaatttcaccatatatgcatatctcctc  7981600                                                     <-----------HVH21                                                    --------->ANAC58                                                    --------->bZIP60(2)                                                    --------->TGA1a                       <---------AHL20(2)           --------->ANAC46                       --------->AHL20(2)           --------->ANAC58         --------->TOE1(3)                          ========================bZIP_DOF         --------->YAB1--------->AHL20(1)         --------->ANAC55(2)                         <------         --------->TOE2(3)                        <---------ANAC55(2)                         -------       <---------ARR11(3)          <---------AHL20(2)<-----------TGA1                    <---------ANAC58       --------->GLK1(2)<---------AHL20(2)        --------->ANAC46                       <---------ANAC58      <---------GLK1(2)<---------AHL20(1)         --------->ANAC58                   <------------CBF <-----------GT1      --------->AHL20(2)          --------->ANAC58 ----------->GT1  <---------ICU4 >ZmHOX2a(1)   ----------->GT1    --------->AHL20(2)--------->O2 ---------->DOF2--------->AHL20(2) --   attttacagaatcttaaatgtaaaattaatttcatatttaatagtttataacacgcgtcacaaaatagaaagaaaaaaaaaactaaatattgcttactta  7981700                                                                                        <-----------ARR10                                                                                        --------->ARR14(2)                                                                                        <---------ARR11(1)                                                                                        <---------ARR11(3)                                                                                        <---------ARR14(2)                                                                                        --------->ARR11(3)                                                                                  <---------ARR14(2)        --------->ANAC58             --------->AHL20(2)  <-----------GT1          --------->ARR14(2)        <---------ANAC55(2)  ------------>CBF            --------->ANAC46        --------->GLK1(1)        --------->ANAC58     *TSS --------->YAB1        --------->MYB46(3)       <---------CCA1(2)   <---------------AtSPL8   --------->ANAC46       <---------GLK1(2)         <---------ALFIN1 ---------AGL15            ------>NtERF2 <---------AHL20(2)                 --------->ANAC46 -------->AGL15            --------->LBD16       <---------TOE2(3)        <-----------GT1         --- -------->DOF2         <-----------GT1   --------->AHL20(2)       <---------At4g35610  <---------CCA1(2)   aaaaagagttacgaaaatatagttttttccgcccaattttaaaataaatataagattatccaccattcatctcatttcaccacatatccatatcttctct  7981800                   ---------->DOF2          ------>ZmHOX2a(2)         <------ZmHOX2a(2)        --------->ARR14(2)        <---------ARR14(2)                    --------->ANAC58        <---------AGP1                        <------NtERF2                                     <----        --------->AGP1  ----------->RAV1(1)   --------->ANAC58                             <---------        <---------ARR11(3)                   ------>NtERF2                                 <---------ZAT6        --------->ARR11(3)                 <---------ABI4(2)                           <---------YAB1 ------->DOF2   <---------ANAC46    --------->YAB1     <---------YAB1     <---------YAB1   --------->ALFIN1   aaaagttttagatctgtttcttagagcgacatcgacgatgacaatggcaccgaaacgatgtttgtatgtattgtttctaatagttcaacatgagtgttgg  7981900                                                                                                   --                                                                                                 <---                                                                                         --------->ARR11(3)                                                                                         <---------ARR11(3)                               <---------At5g28300                                      --------->GLK1(1)                              <-----------GT1                                           <---------GLK1(1)                           <---------ICU4                                   <---------MYB52(1)<------                          --------->AHL20(2)                               --------->TOE2(3)  <------                    --------->ANAC58                                       --------->TOE1(3) --------     --------->GLK1(2)    <---------AHL20(2)                      ---------->DOF2      <---------ARR11(3) --NtERF2           --------->ANAC58                <-----------RAV1(1)<-----------GT1 --------->ARR11(3) --RAV1(1)        ----------->RAV1(1)   --------->ZAT6       <---------MYB46(3)       <<<<<<<<<RAP2.2   cgatgagactctatcaatagccacacaaaaaattactgtctaactcttcaaaatttgttgttgttgttgaaagtaacccttaatttttagatatctaacg  7982000                                                                               <---------TOE2(3)                                                                           <----------DOF2                                                                          ====================HOX2a_HOX2a                                                   <---------ARR14(2)     ==============HOX2a_HOX2a                                                   --------->ARR14(2)     ------>ZmHOX2a(2)                                                  ------>MYB46(1)        ===============HOX2a_HOX2a                                                  ------>MYB83           =====================HOX2a_HOX2a                                                <---------MYB111(1)      <------ZmHOX2a(2)                                          <---------ARR11(1)             <---------RVE1(1)                                          ------->TEIL                  <---------AGP1              <                                          <---------ARR14(2)            --------->AGP1             --                                          --------->GLK1(2)             --------->ARR14(2) <---------                                     --------->MYB52(1)                 --------->ARR14(3) --------->LBD16                                    --------->TOE1(2)                   --------->ARR11(3)<---------ANAC55(2)          <---------AHL20(2)       <---------MYB52(2)  <-----------HVH21<---------ARR14(2)<---------ANAC58        <---------AHL20(2)     ---------->DOF2 ----------------->AGL1   <---------ARR14(3)<---------ANAC46 ------->MYB52(2)       --------->ANAC46  --------->ARR14(2)            <---------ARR11(3)<---------ANAC55(1) ------MYB52(1)         --------->ETT(2) <---------ARR14(1)      <---------ANAC46         --------->ANAC55(2) ---TOE1(3)             --------->bZIP60(1)    ----------------->AG    <---------CCA1(2)  <---------ANAC58 ---TOE2(3)   <---------YAB1 --------->At5g28300<---------MYB59  <---------ANAC58      ------>ZmHOX2a(1) ->MYB52(1)  <-----------GT1----------->GT1   -------->P         <---------ANAC58<------ZmHOX2a(1)---   tttgttttatatttttttcattgttgacgacagtaaaacgaacgaatctaccaaatcggtcagagtggcttgcagatctttaaggagtccttccgtgaga  7982100                                                    --------->GLK1(1)                                                   <---------GLK1(2)       --------->TOE2(3)                        --------->ANAC46             --------->YAB1     <-------TEIL                               --------->ANAC58 <------MYB46(1) --------P                                      --------->ANAC58 <------MYB83--------->ATHB12 ------->At5g28300                              --------->ANAC55(1)         <---------ATHB12 --HVH21                                       <---------LBD16  --------->MYB59 -------->GT1                       <---------ANAC55(2)         <---------AtMYB61    --------->KAN4(2)   cggtaagttcattaatctaactattagcctattacattacatatatgtccacggaatttcaattgtttggtctacccattcattgtttattctctcttgc  7982200  Previous    Next  AGI:  At1g22580.1    Description:  transposable element gene. pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 32% identity and 1.1e-13 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus} Range:  from: 7980698    to: 7981252    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g22590.1    Description:  AGL87; transcription factor. contains domain PTHR11945 (PTHR11945) Range:  from: 7981729    to: 7984323    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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