Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         <---------ARR11(3)                                                                           <       --------->GLK1(2)                                                                            -       <-----------ARR10                       <-----------GT1                          --------->ANAC58      <---------GLK1(2)                    <---------TOE2(3)                            --------->ANAC58  <-------TEIL                 <---------ARR11(3)  ----------->GT1           <-----------GT1        - --ANAC46                  --------->YAB1<---------AHL20(2)             <---------AHL20(2)          < --ANAC55(2)  <------ZmHOX2a(1)--------->GLK1(2)  --------->ZAT6     ----------->GT1  ---------->DOF2   aacatacagaatcttaggaaacttagcaaacaaaatctaaaaatttatgttaccagtaaaacaactctgaatagttaatttacaagtccaaagcaaaatt  7952300                                                                             <---------TOE2(3)               ------>MYB83                                                 <---------DOF5.7(2)               ------>MYB46(1)             <-----------HVH21                --------->MYB52(1)          <---------ARR14(2)              ------>ZmHOX2a(2)               <---------MYB52(2)       --------->ANAC46                  <------ZmHOX2a(2)               <---------At4g35610       --------->ANAC58                 <---------ARR14(2)               --------->At4g35610        -       --------->ANAC58                 <---------ARR11(3)          <---------TOE2(3)            <---     --------->MYB52(1)       --------->ANAC58                     --------->DAG2           --------- ---------HSFC1(1)            --------->ANAC58                    ---------->DOF2    <-------TEIL---- -------->HSFC1(1)<-----------HVH21     --------->ARR14(2)    <---------------AGL15 --------->CCA1(2) -------->HSFB2a(2)   --------->LBD16 <---------YAB1         ------>ZmHOX2a(2)     --------->ARR14(2) ---------HSFB2a(2) <-----------RAV1(2) --------->ARR11(3)   <-----------------AGL1<---------ARR14(2)   gtctagaaaacggaaccaagcttcaggggaaaacgaaattaagatcgtcacaactcgatttgatcccataaaggaagctaacgaagattcagagaagcta  7952400                                                                                                 <---                                                                                                 ----                                                                                             --------                                                                                             --------                                                                                            ---------                                                                     --------->ANAC58      --------->ANAC58                                        --------->ANAC46             --------->ANAC58      --------->ANAC58                                        --------->LBD16            ---------->DOF2      <---------ABI4(2)                                       --------->HSFB2a(2)       --------->ANAC58       --------->ZAT18                                       <---------HSFB2a(2)       --------->ANAC58      ------>ZmHOX2a(2)        <---------ARR14(2)           =============================HOX2a_HOX2a         <------ZmHOX2a(2) <---------ALFIN1                    <------ZmHOX2a(2)     ==================================HOX2a_HOX2a -------->ZAT14                     --------->ARR14(2)     <------ZmHOX2a(1)        --------->GLK1(1) ------STY1(2)                      <---------ARR14(2)     ===================================HOX2a_HOX2a >GLK1(2)                      <-----------GT1            ----------->GT1           <---------GLK1(1) ----->STY1(2)                 --------->MYB52(1)  <---------HSFB2a(2)            <------ZmHOX2a(1)   gctacactcgaattctgtgactactgaaactaataaccgatcccgaaacgattcgagagaaggagaaacgaaagcaaataagaaggagatcgcaccgcag  7952500                                                                                --------->YAB1                                                                                --------->ATHB12                                                                               <-------TEIL                                                                           <---------ZAT18                                                                          <---------ANAC46                                                                          <---------ANAC58                                                                          <---------ANAC58                                                                         --------->ATERF1(1)                                                                         --------->RAP2.3(1)                                                                         <------NtERF2                                                                        ------>NtERF2                                                                       --------->ALFIN1 ------ARR14(2)                                                        <---------DEAR3(1) ----->ARR14(2)              <-------GAMYB                           --------->LBD16 ->LBD16               --------->ANAC58                            <---------LBD16   ---------->ID1 ->ZAT14               --------->ANAC58                     <-------TEIL<---------ATERF1(1) >DEAR3(1)       <---------WOX13(1) --------->ALFIN1   ---------->DOF2<---------MYB52(1)            -   aaccagtgagagcaattggattggcaaggagcgttgaagtggccatggcatatcgaacaaagttcgttctccggtggcgcattcattgtcgtcttcgtct  7952600                                                                          --------->LBD16                                                                         <---------ANAC58           <                                                                         <---------ANAC58         ---                                                                    <---------DAG2               <---                                                              -------->HAHB4                     <---                             --------->DEAR3(1)               --------->YAB1                     ----                      <-----------HVH21                       <---------ICU4                     ----                     <---------O2                             *TSS  <----------DOF2 --------->ANAC55(2)                     --------->TGA1a                         --------->ICU4         <---------ANAC55(2)        <----------DOF2     <------NtERF2                    <---------ATHB51      --------->MYB59<--        =======================bZIP_DOF                <---------ZAT6    --------->ANAC55(2) --------   ------>ZmHOX2a(1) --------->O2           --------->At4g35610 <---------YAB1   <---------MYB52(1) - ----->ZmHOX2a(1)    <---------TGA1a  <---------LBD16  ----------->GT1  <---------LBD16    <---------TOE2(3)   tcctcctctgctattagtctctctcgtcgcagcgtcgttcttcggaagctctatagagtgttaattatgacttttccgtagcagttaagtattaagaaaa  7952700             <-------MYC3             -------->ABF1             <-------MYC4             ------->MYC4             <-------MYC2             ------->MYC3             ------->PIF5             ------->MYC2            <---------O2            --------->TGA1a            <---------TGA1a       --------->ARR14(2)  --------->MYB52(1) --------->ATHB51 <---------ICU4 -------->HAHB4 ---------YAB1 ------>YAB1--------->ANAC46 ------ATHB51<-------PIF5                     --------->ARR14(2) ------AHL20(2)                            ----------->TBP ----->ICU4 --------->O2    <---------At4g35610   ------------>CBF ----->AHL20(2)            <---------TOE2(3)  <---------ARR14(2) -------ICU4--------->ANAC55(2)        <------NtERF2                             <---------TOE2(3) ->AHL20(2) <---------ANAC55(2)       <---------ATERF1(1)                  <---------------AGL15 -------->ICU4  ------------>CBF    <---------LBD16   ----------->RAV1(2)  <---------YAB1      ------   taattatcggaaacacgtggcaatagattaagctaagacgcggctacaaatatgcaatctgagccgttcaaaggcttctaattgaggtcatcaagatgag  7952800                             <----------DOF2                            <---------ANAC46                            <---------ANAC58                            <---------ANAC58                           <------NtERF2                         <---------RAP2.6(2)                     --------->LBD16                       <------MYB46(1) <---------AHL20(2)        <------NtERF2                       <------MYB83--------->AHL20(2)           --------->ANAC58                       <---------MYB46(3)                       --------->RAP2.6(2)                 -                       --------->MYB52(2)        <---------AHL20(2)                                 <                      --------->ALFIN1 --------->YAB1--------->AHL20(2)                          ----                      <---------DEAR3(1)      ------->TEIL      --------->ANAC58   <-----------GT1 <-  <-----------GT1     <---------AtMYB61--------->AHL20(2)<---------AHL20(2)   --------->AHL20(2) ---- ----->GT1     <---------DOF5.7(2) <---------AHL20(2)<---------AHL20(2)  ----------->GT1--------->ZAT6   tgaataaccatgcctgttaacgcgttggtggctttgtttaattatatgtatatttttaatttaaggccgcaaaaacagaaaaaaataacaacactaaaat  7952900         --------->AHL20(2)                                                      ------>ZmHOX2a(1) -------->AHL20(2)                                                        <---------YAB1 ---------AHL20(2)                                                       --------->TOE2(3) ----->AHL20(2)                --------->ZAT6              <---------At4g35610  --------->TOE2(3) --------YAB1            ----------->GT1 <------ZmHOX2a(2) --------->At4g35610  --------->TOE1(3) ----->YAB1              <---------MYB46(3)--------->WOX13(1)          <---------YAB1    ----------->GT1   tataaattagataaaatatggattgagttgttaaaactactcgatcagtcaatttagtagcagctaaaaacatatcattaatccttaaaacctgtaactt  7953000                                                                   --------->AHL20(2)                                                                   <---------ICU4                                                                   <---------AHL20(2)                                                                   --------->ATHB51                                                           --------->LBD16                  <--------                                                         <---------LBD16    --------->ANAC58<--------                                              --------->ANAC58    --------->ICU4       --------->TOE1(2)                       <---------YAB1         --------->ANAC58 <------ZmHOX2a(1)---------->DOF2 <----           <------ZmHOX2a(1)       --------->ZAT6   <---------ATHB12        --------->ANAC58---------   agtcgatatgtgaggagattatttgatgaatgaaggaacagtagaggcaaacaaatcaaaccggaggaattatttctcaagtaaaagaacataagatttt  7953100                         --------->YAB1              <---------ZAT14                         --------                   <---------PCF2          <---------ZAT14                               <---------MYB52(1)                  <------MYB83             --------->ZAT14                               --------->DOF5.7(2)        --------->AHL20(2)                 <---------ZAT18                             <---------ANAC58 -GLK1(2)         <------MYB46(1)        --------------->AtSPL8   ---------->DOF2      <---------ANAC46 -ARR11(3)       <---------MYB46(3) --------->bZIP60(1)       --------->ANAC58         <---------ANAC58 -------GT1     --------->ALFIN1    <---------bZIP60(1)       --------->ANAC58 <<<<<<<<<<<<<<<<<LFY >ARR11(3)   --------->ATHB12  <---------ICU4       --------->AtMYB61          <-----------GT1   ----   tcaaaacaaaaaaaatgagtgggtcattaacaattttgacatcagtgtacaaaaccacactgagaagcaaaagtttttttttaacaatggcgttatctca  7953200  Previous    Next  AGI:  At1g22510.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G72175.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64673.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 7950808    to: 7952662    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g22520.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G72170.1); similar to unknown [Populus trichocarpa] (GB:ABK94376.1); contains InterPro domain Protein of unknown function DUF543 (InterPro:IPR007512) Range:  from: 7953011    to: 7954407    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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