Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           --------->ANAC58                                                         --------->ANAC46                                                         --------->ANAC58                                               <---------YAB1                                            --------->GLK1(2)                                            --------->ARR11(3)                              --------->At4g35610      --------->ANAC46                            <------ZmHOX2a(1)<------ZmHOX2a(2)                            ========================HOX2a_HOX2a                           <---------At4g35610------>ZmHOX2a(2)                                <-----                  --------->AHL20(2)        <---------AGP1                                     ------                  <---------AHL20(2)        <-----------ARR10                             -----------               <-----------------AGL3       <---------ARR14(2)                            <----------               ======================================================================================          --------->AHL20(2)=========================HOX2a_HOX2a               <-----------GT1-------   <---------AHL20(2)    <-----------RAV1(2)--------->ARR14(2)     <----------DOF2        =========== -------YAB1  <---------AHL20(2)            <---------ARR11(3)  <---------TOE2(3)      <----------DOF2 ---->CCA1(2) --------->AHL20(2)           <------ZmHOX2a(1)    <---------TOE1(3) ---------->DOF2   atgattttttttttatatatataaatggcaggagcttaatctagaggatctgattacacacgaattaagctttgaagaaattaacaaagctttccattta  7924700 ----AHL20(2)              <---------AHL20(2) --->ATHB12             --------------->AGL15 ------>AGL3            <---------------AGL15            --------->ATHB12 -------AGL2           <-----------------AGL3   ------>ZmHOX2a(1) =======MADS_MADS   <---------MYB52(1)          <----------DOF2              <---------ARR11(3) -->AHL20(2)   --------->ARR14(2)  ----------->GT1  <-----------GT1<-----------GT1 ========================================MADS_MADS <---------CCA1(2)      ------>ZmHOX2a(1)   ttggctgagggaaactctatccgttgcattatatggatggataaatagtccttttatcttcatttgaattttcttcctagttcttctatgtcccaaaaca  7924800                                    <---------------AGL15                                   ----------------->AGL3                                   ----------------->AGL2                                  -------->P                                           <---------ANAC58                              --------->GLK1(2)                                        <---------ANAC58                              <---------ARR11(3)     --------------------->WRI1    --------->GLK1(1)                              --------->ARR11(3)     ---------->DOF2               <---------GLK1(1)                          --------->YAB1 ---------->DOF2                          --------->ARR14(2)                         --------->AHL20(2)       <-----------GT1          <-----------RAV1(1)                     <---------AHL20(2) --------->AHL20(2)                 <---------MYB46(3)    <---                     --------->AHL20(2)<---------ATHB12                  <---------MYB52(1)     <----                  --------->AHL20(2)--------------->AGL15                <----------DOF2        <----                 --------->AHL20(2)----------------->AGL1  --------->ARR11(3)     <---------ARR14(2)   tagtacttggtaacagaaaataaaaaaataaaaatctaccaataaaagaaatttacaaagttatcttcgatgtccctttgttgggatttgcttctattgc  7924900                                                                                     ----------->GT1                                                                                     <---------ANAC46                                                                            --------->AHL20(2)                                                                           <---------YAB1                                                                         --------->ATHB12                                  ------->PIF5                           <---------ICU4                                  <-------PIF5   <---------AtMYB61       --------->YAB1                           <---------ANAC58    <----------DOF2           <--------ATHB1             - -------DOF2               <---------ANAC46   <---------ANAC58          <---------YAB1          ----- -----ANAC58               <---------ANAC58   <---------ANAC58          <---------ATHB12    <-------- -----ANAC58       <-----------RAV1(1)   --------->ATHB51               --------->ICU4      <--------   tttggctcttgttttttttttttgttgttgtgtgcaagtgcaactattgctttggtttatatatgccttcttcaatgattatatatggtgtgaatcgtgt  7925000                                                        ---------->DOF2      --------->AHL20(2)                                                   <---------YAB1         <---------ANAC55(2)                                                 ----------->GT1     --------->ANAC58                                                 --------->YAB1      --------->ANAC58          ------                                                <---------YAB1    --------->TOE2(3)         ------>ZmHOX2a(1)   <---------MYB52(1)                          <------------CBF  --------->ANAC55(2)   <---------At4g35610 ----->ZmHOX2a(2)                            <---------YAB1      <---------ANAC55(2)   --------->At4g35610 ------>HVH21                 --------->YAB1 --------->ICU4     <---------TOE2(3)  <-----------HVH21 -ANAC58          --------->MYB52(2)        --------->TOE2(3)   <---------TOE1(3)  <-----------TGA1 -ANAC58  <------------CBF  <---------ARR11(3)--------->ATHB51 --------->MYB52(1) --------->YAB1  ---   gatccgttcttatattgtgttcgtttccaaaatcatattttcaaaacattattgtaataaaagtctaacgtaagtcacataaaatcgtcatctcctaacc  7925100                                <----------ID1                             ---------->DOF2                        <------NtERF2                           --------->YAB1                         <---------DEAR3(1)                          <---------ATHB12                       <---------MYB52(1)     <---------ARR14(2)          *TSS          --------->WOX13(1)                      <-------GAMYB           --------->ARR14(2)   --------->TOE2(3)  <---------ATHB12                         <---------ANAC58  --------->GLK1(1) --->MYB46(3)       --------->WOX13(1)                         <---------ANAC58  <---------GLK1(1)<-- ------->DOF2     --------->LBD16----------->GT1       --------->MYB52(1)     <---------YAB1 <-------   aaaagcctaaattttagttccccaatcaatcaaaagggcaaaactccacagataaaaaaacgatttcgttggcgaaaattttgatttccaaatccctttt  7925200                                     ----------->GT1                               <---------ZAT18                                                  <----               <----------DOF2 --------->ZAT18                                                  =====             <---------At4g35610------>NtERF2                                                   =====        --------->ZAT14      <---------At4g35610                                         --------->ETT(1)    --------->ATHB12       --------->DAG2                                               <------------ -------At4g35610         ---------->DOF2                                          <---------MYB52(1) ---DOF2<---------ZAT14----------------->AGL1            <---------YAB1      <<<<<<<<<TAC1<---------DEAR3(2)   atctgatcagtggagagcttattgggcctaaagcggacttagtaaaacaggcccaaattatgttagaacaaaacaaaacactgtcgttttgtcggtaagg  7925300                            --------->TOE1(3)                        ---------->DOF2                   ------>ZmHOX2a(1)                   --------->LBD16                  <---------LBD16                                                                   -                 ------>ZmHOX2a(2)                                                                 --                <------ZmHOX2a(2)                                                                  --                --------->GLK1(2)                                                                  <-               --------->ARR14(2)                                                                  <-               <---------ARR11(3)                                                                  <-               <---------ARR14(2)                                                                ----               --------->ARR11(3)                                                   <------ZmHOX2a(2)               --------->AGP1                                         --------->GLK1(2)     ---------              --------->GLK1(1)                                      <---------ARR11(3)     --------- --ZmHOX2a(1)----------->ARR10       --------->MYB52(1)              <---------GLK1(2)      <-------- ======================HOX2a_HOX2a   ------>MYB83           --------->YAB1         <---------ARR14(2) =======================HOX2a_HOX2a  ------>MYB46(1)       <---------YAB1          --------->ARR14(2) ---------WRI1<---------GLK1(1)    <---------MYB59    <---------ZAT6 --------->ARR11(3) <-----------HVH21   acatagccagatagagagatcctggagaaagcttaaacctaacaatttctctcagagtgttatcatcaaaagattcttggtctccgatccagtcacctga  7925400                                              --------->ZAT14                                       <---------ARR14(2)                                       --------->ARR14(2)                                      --------->ATERF1(1)        <---------ZAT2                <------NtERF2 -------->GLK1(2)                    <---------MYB46(3) ------->ARR14(2)                   <---------RAP2.6(2) ------->ARR11(3)                   <---------ANAC58                                 --------->At4g35610 --------GLK1(2)                    <---------ANAC58                                 <---------At4g35610 --------ARR11(3)                   <---------ANAC46                          <---------YAB1 --------ARR14(2)          <----------DOF2   ----------->HVH21               --------->KAN4(2) ------->ARR10          <---------ALFIN1   <---------ANAC46             <---------TOE1(2) -->RAV1(2)           <---------ALFIN1<-------GAMYB                     <---------TOE2(2)      <----- >At4g35610      <-----------GT1   <---------LBD16                     --------->LBD16     --------->TOE2(3) -At4g35610  <----------DOF2     xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <---------TOE1(1) <-----------GT1   agattctccgagcttcttttgaccacacactttcaatggcggatgctgtgaacgctcaaactccatcgctctccgaggttattcttcatcttacctcatt  7925500                          <----------DOF2                        <------ZmHOX2a(2)                       --------->ARR11(3)                       <---------ARR11(3)                       --------->ARR14(2)                       <---------ARR14(2)                    ------>ZmHOX2a(2)                   --------->CCA1(2)                   <------ZmHOX2a(2)                   --------->ARR14(1)                  --------->ARR11(3)                  --------->ARR14(2)                  <---------ARR11(3)                  <---------ARR14(2)                  --------->ARR11(1)                --------->HSFB2a(1)                            --------->YAB1                <---------HSFB2a(1)                           <---------YAB1                ----------->ARR10                     <---------GLK1(2)          <---------TOE1(2)           --------->HSFB2a(2)                    <---------ZAT2                ------>ZmHOX2a(1)           <---------HSFB2a(2)                    --------->At4g35610          --------->TOE2(2)          <---------LBD16------>ZmHOX2a(2)        --------->ZAT2   <-----------GT1 ----CCA1(2)  ---------->DOF2                     <---------At4g35610          --------->TOE1(2)   tctcatttgctctctggaaagatccgatctttgttcgatctactgaaaactgagctgattctctatgattttctgtataatcctacgattttgaatttga  7925600  Previous    Next  AGI:  At1g22440.1    Description:  alcohol dehydrogenase, putative. Identical to Alcohol dehydrogenase-like 2 [Arabidopsis Thaliana] (GB:Q9SK87); similar to alcohol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT1G22430.2); similar to alcohol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT1G22430.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61679.1); contains InterPro domain Alcohol dehydrogenase GroES-like (InterPro:IPR013154); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040); contains InterPro domain GroES-like (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase, zinc-containing, conserved site; (InterPro:IPR00 Range:  from: 7922417    to: 7924933    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g22450.1    Description:  COX6B (CYTOCHROME C OXIDASE 6B); cytochrome-c oxidase. similar to cytochrome c oxidase subunit 6b, putative [Arabidopsis thaliana] (TAIR:AT5G57815.1); similar to hypothetical protein OsI_011535 [Oryza sativa (indica cultivar-group)] (GB:EAY90302.1); similar to Os03g0390400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050275.1); contains InterPro domain Cytochrome c oxidase, subunit VIb; (InterPro:IPR003213) Range:  from: 7925110    to: 7927267    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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