Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               <-------                                                                                             --------                                                                                         --------->AHL20(2)                                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                    <---------ALFIN1    <---------AHL20(2)                                                                   ------>MYB46(1)      <---------AHL20(1)                                                                   ------>MYB83     --------->AHL20(2)                                                                  ----------->RAV1(1)   --------->AHL20(2)                                  <---------ARR11(3)             --------->AtMYB61  <---------AHL20(2)                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    ------->GAMYB     --------->AHL20(1)        --------->MYB52(2)  ------>MYB83                        --------->MYB46(3) --------->AHL20(2)        ----------->GT1 >>>>>>>>>>MYB80                       <-----------GT1      <---------AHL20(1)   <---------TOE2(3)   <-----------GT1                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <--- ---------ATHB12     --------->AHL20(2)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<----- -----GT1           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------TOE2(3)         <---------AHL20(2) -ATHB12<---------MYB46(3)  ------>MYB46(1)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<-------- -MYB52(2)  <---------AHL20(2)    --------->ARR11(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------AHL20(2)   ccatcaaggtttgttaaattgaattaaaccaactaaaatctctaaaccgatgtcaatttaagtttaaccaacacatctaaaccaatttaataaaattatt  7725600                                                                                           >>>>>>>>>E2Fc                                                                                           >>>>>>>>>E2Fd                                                                                          ------>NtERF2                                                                                          --------->LBD16                                                                                         --------->ANAC58                                                                                     <xxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxx>smallRNA(i)                                                                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                                <---------MYB52(1)                                                                                xxxxxxxxxxxxxxxx>smallRNA(si3)                                                                                <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                               xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                               --------->LBD16                                                                               <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                              <---------ANAC55(2)                                                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                          <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                         <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                        <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                        <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                       <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                       <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                       --------->TOE2(3) --------->ANAC46                                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                      <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                      <---------ANAC55(2)<<<<<<<<<<E2Fa                                                                  xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                               xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                               <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                               >>>>>>>>>E2Fd  --------->ANAC55(2)                                                              <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxx                                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                              --------->LBD16 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                              ------>NtERF2  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                             <xxxxxxxxxxxxxxxxsmallRNA(i)--------->ANAC58                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                             --------->ANAC58xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                             --------->ANAC46<xxxxxxxxxxxxxxxxsmallRNA(s)                                                             --------->ANAC58xxxxxxxxxxxxxxxx>smallRNA(s)                                                             <<<<<<<<<<E2Faxxxxxxxxxxxxxxxx>smallRNA(i)                                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                            <---------LBD16<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                  ----------->GT1           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <<<<<<<<<CBP60g       --------->YAB1                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <<<<<<<<<SARD1        --------->AHL20(2)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) <-----------GT1          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)>>>>>>>>>E2Fcxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --AHL20(2)            --------->ANAC46            <-----------TGA1 <xxxxxxxxxxxxxxxxsmallRNA(i) ->AHL20(2)            --------->ANAC58   ----------->GT1  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ------AHL20(2)        --------->ANAC58  --------->DAG2    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xx ----YAB1          --------->CCA1(2)    ---------->DOF2  <xxxxxxxxxxxxxxxxsmallRNA(i)<-----------GT1 -AHL20(2) --------->TOE2(3)<---------ATHB12 --------->ZAT14<xxxxxxxxxxxxxxxxsmallRNA(s)<---------LBD16   ttttttccaaatttcttaaatatacaagcaatgaaattgagaaaaagtaaactcgtcattttcccgccaaaaacgtaaacccgtgattttcccgccaaaa  7725700                                                                               xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                               xxxxxxxxxxxxxxxxxxxxxx                                                                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                              <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                             >>>>>>>>>E2Fc                                                                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                             <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                            <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                            --------->LBD16                                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                            ------>NtERF2                                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                           <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                           --------->ANAC58                                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                           <<<<<<<<<<E2Fa                                                                           --------->ANAC58                                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                          <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                          <---------LBD16                                                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                       <-----------GT1                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                      <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                    <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                    <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                  <---------MYB52(1)                                                                 --------->LBD16                                                                --------->ANAC55(1)                                                                <---------ANAC55(2)                                                                --------->ANAC55(2)                                                                --------->ANAC46     <xxxxxxxxxxxxxxx                                                                ----------->GT1<xxxxxxxxxxxxxxxxxxxxx                                                                --------->ANAC58     --------->TOE2(3)                                                            <xxxxxxxxxxxxxxxxsmallRNA(i)                                                           <xxxxxxxxxxxxxxxxsmallRNA(i)                                                           <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <xxx                                                           <xxxxxxxxxxxxxxxxsmallRNA(s)  xxxxxxxxxxxx                                                          xxxxxxxxxxxxxxxx>smallRNA(s) <xxxxxxxxxxxxx                                                          xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxx                                                          <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxx                   --------->LBD16                       --------->TOE2(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  --------->ANAC46                       <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxx                 <---------LBD16                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------      --------->TOE2(2)                                 <---------ANAC55(2)--------->ANAC46  xxxxxxxx      --------->TOE1(2)                                 <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(i)  <xxxxxxxxxxxxxxxxsmallRNA(i)                 --------->LBD16 <xxxxxxxxxxxxxxxxsmallRNA(i) <--------  xxxxxxxxxxxxxxxx>smallRNA(i)                 <-----------HVH21--------->ANAC58xxxxxxxxxxxxxxxxxxx>smallRNA(se3) <xxxxxxxxxxxxxxxxsmallRNA(i)                 --------->ANAC46xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<- xsmallRNA(i)  <-----------GT1            <-----------GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<------ xxxxxx>smallRNA(le3)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)>>>>>>>>>E2Fd  --------- xxxxxxxxxxxxxsmallRNA(se3)        ----------->GT1     <xxxxxxxxxxxxxxxxsmallRNA(i) <---------ANAC55(2) xxxxxxxxxxxxxxsmallRNA(i)         --------->ANAC55(1)<xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(i)   aacataaacctgtgatttttccgcaaaaaacaaaaactcgtaattttcccgtcaaaaaacgtaaacccgtaattttcccgccaaaaacgtaaacccgtga  7725800                        <xxxxxxxxxxxxxxxxsmallRNA(s)                      <---------MYB52(1)                     --------->LBD16              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             --------->TOE2(3)          <xxxxxxxxxxxxxxxxsmallRNA(i)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     ----------------->AGL1     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     ----------------->AG  <-----------GT1   ------>ZmHOX2a(1)<---------ANAC55(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------ANAC58   --------->ANAC55(2) <---------ANAC58  <xxxxxxxxxxxxxxxxsmallRNA(s) x>smallRNA(fl3)   xxxxxxxxxxxxxxxx>smallRNA(s) xsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     ----------->GT1 xxxx>smallRNA(i)xxxxxxxxxxxxxxxx>smallRNA(i) xxxsmallRNA(s)<xxxxxxxxxxxxxxxxsmallRNA(s) xxsmallRNA(i)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxsmallRNA(s)<xxxxxxxxxxxxxxxxsmallRNA(s) xsmallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(s) ->LBD16xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                ------------>CBF xxxxxxxxxxxxxx>smallRNA(si3)   --------->LBD16                         <xxxxxxxxxxxxxxxxsmallRNA(fl3) -ANAC55(2)  <xxxxxxxxxxxxxxxxsmallRNA(i)                               <-----------GT1 ----------GT1<xxxxxxxxxxxxxxxxsmallRNA(i)          <-----------TBP ------>ZmHOX2a(1) ---MYB52(1)<---------ANAC55(2)--------->ANAC46--------->ANAC46    --------->TOE1(3)               <- >ANAC55(2) <xxxxxxxxxxxxxxxxsmallRNA(i)  ------->TEIL             --------->TOE2(3)      -----------   ttttcctgccaaaaacgtaaacccgtgattttcccgtcaaaatgtatataagtcatatatatgtataatccttaatacaatctagcgcctctatatataa  7725900                                                                                 <---------ATERF1(1)                                                                                 ------>NtERF2                                                                                 <---------ERF1                                                                                 <---------ORA47(2)                                                                                 <---------RAP2.3(1)                                                                                <---------RAP2.3(2)                                                                                <---------RAP2.3(3)                                                                                <---------ANAC46                                                                                <---------DREB2C(2)                                                                                <---------RRTF1(2)                                                                                <---------RRTF1(3)                                                                                <---------ATERF1(2)                                                                                --------->ATERF1(2)                                                                                <---------RAP2.6(2)                                                                           <----------DOF2                                                                           ------>ZmHOX2a(1)                                                                       --------->ARR11(3)                                                                       <---------ARR11(3)                                                                      --------->CCA1(1)                                                                      --------->RVE1(1)                --------->TOE1(3)     <-----------GT1            ----------->GT1<---------DEAR3(1)   ---------->DOF2            <-----------GT1  <----------DOF2  ----------->GT1<---------LBD16 ---------ID1   --------->TOE2(3)    <<<<<<<<<<GT-3b           --------->At4g35610--------->RAP2.3(1) >TBP   ---------->DOF2--------->TOE2(3) <----------DOF2       <---------At4g35610<------NtERF2   gaagacaaagaaaagaaaccctaaaccttgattcactatttttctttctctttgatagctatggaagcggaaatatcctttggcggcgaaatagacctca  7726000                                            --------->LBD16                             --------->ARR14(2)     ----------->HVH21                             --------->GLK1(2)     ------>ZmHOX2a(2)                             <-----------ARR10    <------ZmHOX2a(2)                             --------->ARR11(3)  <---------ARR11(3)                             <---------ARR14(2)  --------->ARR14(2)               <---------ANAC58                             <---------ARR11(3)  <---------ARR14(2)           <<<<<<<<<CBP60g                         --------->YAB1    --------->HSFB2a(2)                <<<<<<<<<SARD1                      --------->WOX13(1)   <---------HSFB2a(2)               ------>MYB83                   <---------ARR11(3)    --------->ZAT18                     ------>MYB46(1)             --------->GLK1(2) --------->TOE2(2) --------->ARR11(3)       --------->ANAC46   --------      --------->YAB1<------ZmHOX2a(2)    <---------ZAT18     --------->WOX13(1)   <---------ANAC58   aaccgaaatcacaagatgctggatcattcaaaatctgcgtaagtgcccgaagatcggacacatcaattagtcttccaccaaatttcgttctctcgtacaa  7726100                                                                <---------At4g35610                                                       <---------------AtSPL8                              <---------ATHB12        ----------------------->TaNAC69(2)                         --------->TOE2(3)            <---------ANAC58                       ------>MYB83                   <---------ANAC58                       -------->P                     <---------ANAC46                       ------>MYB46(1)               <---------MYB46(3)                      ------>ZmHOX2a(1)              <------MYB46(1)                     <---------MYB111(1)             <------MYB83                     <---------MYB111(2)         --------->ATHB12                   ------>ZmHOX2a(1)             <--------ATHB1 --------->ZAT2               <---------ARR14(2)               --------->ICU4  --------->At4g35610               --------->ARR14(2)               <---------YAB1  <---------ZAT2              <---------CCA1(2)    ----------->GT1 <---------WOX13(1)  <---------GLK1(1) ->SPL7   <-----------HVH21 <---------ICU4     <---------WOX13(1)    <---------ZAT18               --   tgactacgaaggtgtcatatcctcctaccctaatgactcgaaaaaactgaatgattggttgtactcagcagggctctccgaacaatatgttgacattgct  7726200                  --------->ARR14(2)                  ------->TEIL                  --------->GLK1(2)                                                                --            --------->ZAT14                                                      --------->ZAT14   --       ------->GAMYB                                                          ----------->GT1     <--     <---------At4g35610                                                <---------------AtSPL3  <----     --------->At4g35610                                      --------->TOE2(3)  ---------->DOF2----- ------->ZAT6     <---------ARR14(2) <---------TOE2(3)        <----------DOF2 <---------ZAT6  <------   aactctcaactcactgaacgaatctgtaagtcgatttctatggtagactcttcagtttgtgctactttagtttacatgtactgtaaagtcattgttccac  7726300                                                                         <---------MYB52(1)                                                                    <---------WRKY18(1)                                                                   --------->WRKY38(1)                                                                   ----------->HVH21           ------   <---------WOX13(1)                                              --------->WRKY12         --------- ------->TOE2(1)                                                  <---------WOX13(1)       <---------AHL20(2) ------->TOE1(1)             --------->YAB1                      <-------GAMYB       ----------->GT1 -------LBD16                --------->AHL20(2)                <---------AtMYB61   ---------->DOF2 -----ZAT2                  <---------ATHB12               <---------ANAC58     --------->ANAC58 ---->ZAT2                  <---------ATHB51     ----------->GT1<---------MYB46(3) ================== ---ALFIN1            --------->AtMYB61 --------->ATHB12   <---------ANAC58     --------->ANAC58   ctcggattgactcgtttgatgagaccaccaataatatcgagttgattagaccggcaaataagcttgtggttgaccgtttggcaaggaaagtatataataa  7726400                             --------->ZAT18                             <---------ZAT18                             <---------ZAT14                             --------->ZAT14                          --------->ALFIN1                        <---------ANAC46                  ===============================================bZIP_DOF                  <---------O2                  --------->TGA1a                                                  ------->MYC3     <---------GLK1(1)  <---------ANAC58                  ----------->GT1          <-------MYC3     --------->GLK1(1)  <---------ANAC58                  <----------ID1          --------->O2 >>>>>>>>>TBF1    <---------TGA1a                       --------->DAG2            <---------O2 --->YAB1      ----------->TGA1                        --------->DAG2      <---------MYB59 >YAB1         ----------->HVH21                      ---------->DOF2      <---------DAG2         <-- ===========================bZIP_DOF          <------ZmHOX2a(1)        ----------->HVH21  --------->O2   gaagaagaaatccaactctgacgcgagcgtgtgcacaatttgtttggaggagtttgaaaagggagaaatagtggtgaccttaccatgtggccacgagttt  7726500  Previous    Next  AGI:  At1g21960.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G18760.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68374.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63769.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 7725961    to: 7726575    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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