Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        <---------YAB1                                                                                    --------->YAB1                                                                                    -------->HAHB4                                                                                    <---------ICU4                                                                                   --------->ICU4                                                                          --------->CCA1(2)                                       ---------->DOF2                   --------->AHL20(1)                                 <---------HSFB2a(1)         <---------AHL20(2)    <---------YAB1   -                     ----------------->AGL1    ----------->GT1     <-----------GT1 <---------ATHB12--      <---------ANAC55(2)       <---------ARR14(2)        ----------->GT1<---------AHL20(1)       <--      --------->ANAC55(2)       --------->GLK1(2)       ---------->DOF2  <---------ARR11(3)     <----   gacttaatacatgacaaaatggtgcaagtttgggaatctttgaaagaagatgaaaatagaaagttaatttgacaatatataagaaatgattattcatttt  7680100                                                                                   <----------DOF2                                                   <-----------GT1                <---------ANAC58                                               --------->ARR11(3)                 <---------ANAC58        <-------TEIL                           <---------ARR11(3)              <---------MYB52(1) ----->NtERF2             <---------DEAR3(1)   --------->AHL20(1)--------->At4g35610             ---- ------->ANAC46  --------->ARR11(3)            <---------AHL20(1)<---------At4g35610   <---------At4g35610 -------LBD16    <---------ARR11(3)<---------TOE1(3) --------->At4g35610       ---------->ID1  ------ -------GT1  ---------->DOF2       <---------TOE2(3) <---------At4g35610    <-------TEIL<---------GLK1(2)   cccgccttgatacatgaaagagcttaagacggtgtttaagggaaacgaatattttagctctcaaaacagctcatcaaattcgttgctttagcttctcaaa  7680200                                                       <---------ARR14(2)                                                       <---------ARR11(3)                                                       --------->ARR14(2)                                                  ------>NtERF2                                                 --------->ANAC46                                               <---------At5g28300                      --------->GLK1(2)                       <---------PCF2 <---------At4g35610                               --------->ARR11(3)           <----------DOF2        <-----------RAV1(1) <---------CCA1(2)                 <---------ARR11(3) ------->GT1        --------->ALFIN1  --------->At4g35610  ------>ZmHOX2a(1)           --------->CCA1(1) ---->DOF2 <---------DAG2 <------NtERF2       <-----------GT1                          --------->RVE1(1)   agtaaaaaatgggctttttcaagtgggcctcaacttatgttgctgaatttaccgccatatccttcccttacaaaaaatcaattttcaaaaaatcttcatg  7680300                                                                                                   <-                             ---------->DOF2                                             ---------->DOF2                         ----------->GT1                                     <---------ANAC58  <-----                   <---------WRKY12               --------->WRKY18(1)        <---------ANAC58  ------                   <---------WRKY38(1)  ----------->GT1                      <---------ANAC46  ------                  --------->WRKY18(1)  <----------ID1              --------->ARR11(3) ------>ZmHOX2a(2)                 <-----------HVH21   --------->DAG2                <---------ARR11(3)<------ZmHOX2a(2)      <---------ZAT6---------->DOF2 ---------->DOF2            ---------->DOF2     <---------GLK1(1)   ctacagtagtctgaaaccaggtcaaaggagttaaagagaaaagggcaaaacagtcaaacagcataaaaagatgtctgtgtcttggagatcgcaaagctac  7680400                                                                                              <------                                                                                              <------                     ------->GAMYB                                                            -------            --------------->AtSPL8                                                            -------       <---------ZAT14                                                                        <------       <---------ZAT18                                                  ----------->GT1       ------- --------MYB52(1)   <---------ALFIN1                                  *TSS                <----------DOF2 ----At5g28300<---------ZAT14           ------>ZmHOX2a(1)            --------->DAG2     ------------- --->MYB52(1) --------->ZAT14    ------>ZmHOX2a(1)                  ---------->DOF2     <------------ -->P  --------->ZAT14      ---------->ID1   <------------------------ANAC81    <----------DOF2     >   cgttttctgttcactctgtacaacacacttgtctccttcttcctctcttctcttctctctctccatttcaaaaagggtgaaacttttcttctctttctag  7680500                                            <---------HSFB2a(2)                                            --------->LBD16                                            --------->HSFB2a(2)                                      ------>MYB83                                    --------->AtMYB61                                    <---------MYB111(1) ---HSFB2a(2)                       <---------MYB46(2) ---HSFC1(1)                        <---------MYB111(2) -->HSFC1(1)                        --------->MYB46(3)          <---------At4g35610               --- -->HSFB2a(2)           --------->GLK1(2)  <---------LBD16 <---------ARR14(2)                   <---- ---------AGL15        <---------GLK1(2)   --------->LBD16 --------->ARR14(2)                   <---- -------->AGL15        --------->ARR14(2) ----------->RAV1(2)<-------TEIL     ------>MYB83 <---------ZAT14 -->AGL15            ----------->ARR10------>MYB46(1)      <---------GLK1(2)  ------>MYB46(1)   ----- ---AGL15      <-------TEIL         <---------MYB59--------->ARR11(3)       <---------MYB59--------->ZAT14 >>>>>>>>TBF1 --------->CCA1(2)    --------->ANAC46<---------ARR11(3)       --------->AtMYB61 -------   aagaagaaaaccagagatacagagagattctctctctaccaaacccctggaaaaatctccagattcatcttccatagaccaaactaaactctgttcactg  7680600                                                     <---------ANAC58                                                     ----------->GT1                                                     <---------ANAC55(2)     <-----------HVH21                     --------->GLK1(2)                         --------->LBD16 ------>ZAT14                             <---------ARR11(3)                        <---------HSFB2a(2) -----ZAT18    ------>ZmHOX2a(1)          --------->ARR11(3) --------->TOE2(3)      --------->HSFB2a(2) -----ZAT14   --------------->AGL15    <------ZmHOX2a(1)     --------->TOE1(3) <---------GLK1(1) ---->ZAT14  ----------------->AGL1 <---------STY1(1)<---------ANAC46       --------->YAB1 -------->AtSPL8                   --------->TOE1(2) <---------ANAC58      ----------->GT1   tactctctgtcattgtcctgtaagagaaattgaaaaccctaggagattttgaatttcgtaaaaccctaaacacaaaaatgaaaatcccagaaaaacccat  7680700                                                                                     ------->GAMYB                                                                                    --------->ANAC58                                                                                    --------->ANAC58                                                                                    --------->bZIP60(2)                                                                                    --------->MYB46(3)                                                                                    --------->ANAC46                         <---------ZAT2             --------->At4g35610           --------->MYB52(1)                        <---------TOE1(2)           <---------------------WRI1 --------->ANAC58                       ------>ZmHOX2a(1)        ----------->RAV1(1)            --------->ANAC46                     ------>ZmHOX2a(2)         ----------->HVH21               --------->ANAC58               <----------DOF2          <-----------HVH21              <---------ANAC58           <---------CCA1(2)           --------->TOE1(3)               <---------ANAC58           ---------->ID1--------->ZAT2--------->TOE2(3)      --------->MYB46(3)--------->MYB46(3) <-   cttcttaatcttcgtctctttgatcctagcttcgagcttaaccttcacagcgacagcgaaatcaacaatcgagccttgctcaagcaacgacacttgcaac  7680800                         ------>MYB46(1)                         ------>MYB83                        --------->ORA47(1)                       --------->DEAR4(1)                       <---------MYB46(2)                       --------->DEAR3(1)                       --------->MYB46(3)                       --------->DREB2C(2)                                                         <-                      --------->ANAC46                                                   --------->ANAC58                      --------->DEAR3(2)                                                 --------->ANAC46                    --------->REM1(1)                                                    --------->ANAC58                   <---------REM1(2)                                                   <---------DOF5.7(2)                   <---------ZAT14                                                     --------->MYB52(1)                   --------->ZAT14                                                   <---------MYB52(2)               --------->ANAC58                                                     <---------At4g35610               --------->ANAC46                                                ======================           <---------ALFIN1   ---------->DOF2                                  ------>ZmHOX2a(1)   --          <---------REM1(2)--------->TOE2(3)                                   <----------DOF2    <-- ---------DOF2 --------->ANAC58                 <---------CCA1(2)--------->ANAC46   --------->At4g35610   gctttactcggctacacactctacaccgacctcaaagtctcagaagtcgcatctctcttccaagtagacccaatctctatccttttagctaacgccatcg  7680900                                                                                           <---------ARR14(2)                                                                                     --------->YAB1                                                                               --------->ANAC46                                                                              <---------LBD16                                                                            --------->ETT(2)                                                                            <---------ETT(2)             <---------O2                                                   <---------DEAR3(1)             --------->O2 --------->ARR14(2)                                --------->DEAR3(1)             <---------TGA1a             --------->ARR11(3)               <-----------HVH21--------->GLK1(2)             --------->TGA1a  ------>ZmHOX2a(1)                          <---------ANAC46  --------->ARR11(3) --------ARR11(3)         <---------ARR14(2)              --------->WOX13(1)<---------WRKY12 ======================bZIP_DOF          <---------ARR11(3) <---------ATHB12----------->HVH21 ------->ARR11(3)         <---------ARR11(3)    ------>ZmHOX2a(1)      ------>ZmHOX2a(1)   <---------ARR11(3) -------GLK1(1)          <---------CCA1(2)     --------->TOE2(3)     ----------->RAV1(2)   --------->ARR14(2)   atatctcttacccagacgtcgaaaaccatatccttccttcgaagctcttcctcaaaatcccaatcacttgctcctgcgtcgacggaatcagaaaatctgt  7681000  Previous    Next  AGI:  At1g21880.1    Description:  LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR). Identical to LysM domain-containing GPI-anchored protein 1 precursor [Arabidopsis Thaliana] (GB:Q93ZH0;GB:Q9SFE8); similar to peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G77630.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61856.1); contains InterPro domain Peptidoglycan-binding LysM; (InterPro:IPR002482) Range:  from: 7680470    to: 7682205    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version