Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   <---                                                                                                 ----                                                                                                 <---                                                                                         <---------AHL20(2)                                                                                         --------->ATHB12                                                                                         <---------ICU4      <------MYB83                               <---------ANAC58                       <---------YAB1      <------MYB46(1)                            <---------ANAC55(2)                --------->AHL20(1)     <---------AtMYB61                  <-----------GT1                             <---------AHL20(1)    <--------P                     <---------ANAC58                                 --------->ARR11(3)  <---------REM1(1)                <---------ANAC46                                 <---------ARR11(3)  <---------ZAT6  --------->DAG2   <---------ANAC58      <---------MYB52(1)        --------->CCA1(2) ----->YAB1      ---------->DOF2----------->TGA1 --------->ANAC55(2)              --------->ARR11(3) -----YAB1 <---------YAB1   <-------GAMYB        <---------ANAC58   <---------TOE2(3)<---------AHL20(2)   catagtgtaggttttgataaaaagttggagcgttatgacgttttactggttacttatctgttattgttttaagaaaaactattagatatatttattgcat  7618500                                         --------->YAB1                                         <---------ICU4                    <---------ICU4                                        <---------YAB1                    <---------ATHB51                                       <---------ARR11(3)                 --------->ICU4        -----                                  --------->AHL20(2)                      <---------AHL20(2)    -----                                --------->TOE2(3)                         --------->AHL20(2)   ------                              <------ZmHOX2a(2)                          --------->AHL20(2)  --------  --------->ANAC55(2)         <---------YAB1                             <---------AHL20(1)<---------  <---------ANAC55(2)        <---------ARR11(3)           --------->ANAC55(2)     --------->ARR11(3) -----HAHB4                  --------->ARR11(3)  ----------->GT1------>ZmHOX2a(2) <---------ARR11(3) ----->ATHB12        <---------ANAC46  --------->ARR11(3) <---------ANAC55(2)  <-----------GT1------- ------ICU4        <---------ANAC46<---------AHL20(2)    <-------TEIL--------->YAB1     --------->YAB1   cattacttaagtctatttgttttgtgggtaagatcattaaatatcattacaatgtgaaatacatgatcgaatcaaaataattaacatctcttataaccaa  7618600   --------->YAB1   <---------ICU4 ->MYB46(1)                   <---------ANAC58               <<<<<<<<<GATA-1 ->MYB83                      <---------ANAC58      <---------ARR14(2) ----->RAV1(1)       <---------WOX13(1)        ----------->GT1   <---------CCA1(2)   ---------->DOF2 ->MYB46(3)      <----------DOF2          --------->ICU4 <----------DOF2          --------->At5g28300 --GT1          <---------ANAC58   <-------GAMYB    --------->ARR14(2)   <---------ICU4 >GAMYB         <---------ANAC58  <-----------RAV1(1)    <---------DAG2  --------->YAB1   caaaatcatgaccagatagcttgatggacattgcttctgttgtaagaattagtgaatccctttatctatatccaatattgacaccgtaaaaggagtaatg  7618700                                                                                        <-----------GT1                                                                                  <---------AHL20(2)                                                                                  <---------AHL20(1)                                                                                  --------->AHL20(1)                                         ----------->GT1                         --------->YAB1                                  ------>ZmHOX2a(2)                              <---------AHL20(2)                                 <------ZmHOX2a(2)                               --------->AHL20(2)                                --------->ARR11(3)          --------->AHL20(2)  <---------YAB1                                <---------ARR11(3)      --------->AHL20(2)    --------->YAB1                                --------->ARR14(2)     --------->AHL20(2)    <---------YAB1                                <---------ARR14(2)   --------->YAB1          <---------AHL20(2)   <--                            <---------ZAT14        <---------AHL20(2)        --------->AHL20(2)<-----     <-----------GT1        --------->REM1(2)      --------->AHL20(2)    <---------AHL20(2)    <-----   <----------DOF2          --------->ZAT14--------->AHL20(2)            --------->AHL20(2)   -------   tgtttctttactagttggatatatatacagtgtagatcccaaaatgtaaatataaaaataaaaaatatagtagatttatataattatatttttctattta  7618800                                                                                           <-------TEIL                                                                                         --------->ARR14(2)                                                                                     <-------TEIL                                                                                    --------->GLK1(2)                                                                                   <---------GLK1(2)                                         <---------AHL20(2)                        <---------ARR14(2)           --------->YAB1                <---------AHL20(1)                        --------->ARR11(1)        --------->YAB1                   --------->AHL20(1)                        --------->ARR14(2)        <---------ICU4       --------->ANAC58                                     <---------HSFB2a(1)       --------->ICU4        --------->ANAC46                                     --------->HSFB2a(1)       <---------ATHB12      --------->ANAC58                                     --------->HSFC1(2)     --------->YAB1         <---------TOE1(2)                     <---------ARR14(2)--------->CCA1(2) --------->ZAT6            ------>ZmHOX2a(1)                      --------->ARR14(2)--------->ARR14(1) ---------GT1             --------->TOE1(2)              --------->AHL20(2)       <---------HSFC1(2) ----ICU4 <---------------AGL15          --------->AHL20(2)   <-------TEIL       ----------->ARR10 ----AHL20(2)             --------->TOE2(2)          ----------->GT1       ---------->DOF2--------->CCA1(2) -->AHL20(2)     ----------->GT1   ----------->GT1   <------ZmHOX2a(1) --------->ANAC46  <---------ARR14(2)   ttacctctaataatcaaaatagtaaaatcctacgaaaatgtaataaaatacaagaggattaatatacatatccacataaaaggaagattcggatacacat  7618900                                    <---------AHL20(2)                                   --------->YAB1                               --------->AHL20(2)                             *TSS --------->AHL20(2)       <-------TEIL                          --------->ICU4    <-----------HVH21                --------->YAB1<---------AHL20(2)--------->ANAC58                            ---------             --------->TOE2(3)--------->AHL20(2)--------->ANAC58                          <----------   ccaaactatagaaaacattagtaatgccataaataaataaaaatgctgtcaagacacaaaattcgttgaatgttatagtcttcacataaaactgtcataa  7619000                    <---------WOX13(1)                  <--------ATHB1                  -------->HAHB4                  --------->ATHB51                  --------->ATHB12                  <---------ICU4                 --------->AHL20(2)                 --------->ICU4                 <---------ATHB51                 <---------AHL20(2)                                      --------->TOE2(3)               --------->YAB1                                            --------->YAB1           <--     <-------TEIL<---------YAB1                                        ------->TEIL         <--------   --------->ARR14(2)                                        --------->ARR14(2)             ---------   <---------ARR14(2)    ------>ZmHOX2a(2)                   --------->GLK1(2)              <-------- >YAB1     --------->HSFB2a(2)                       <---------YAB1 <---------YAB1    --------->ANAC58 -HVH21    <---------HSFB2a(2)--------->TOE2(3)   <---------YAB1 ------>ZmHOX2a(1)    --------->ANAC58   atctggatacgttctaaaaataattgatctaatctaaatctataagtagtttcttattagtagaatccttatgaatcttaatttgatcaagacagaaacg  7619100                                                                                        ------->TEIL                                                                                   --------->LBD16                                                                                 <---------LBD16                                                                             ----------->HVH21                                                             <----------DOF2 <---------ETT(1)                                                            <---------ANAC46------>ZmHOX2a(2)                                                     --------->ZAT2        <------ZmHOX2a(2)                      --------->ETT(2)               --------->At4g35610   --------->CCA1(2)                      <---------MYB46(3)             <---------ZAT2       <---------ARR11(3)        <                ------>MYB46(1)                      <---------At4g35610  <---------ARR14(2)        -                ------>MYB83         <----------DOF2<---------ARR14(2)    --------->ARR14(2)      ---        <----------DOF2     ----------->TGA1     --------->ANAC46         --------->ARR11(3)      --- --------DOF2   --------->MYB52(1)--------->GLK1(2) --------->ARR14(2)   <---------GLK1(1)   -------- -GLK1(2)     <---------MYB59  <---------YAB1   <---------LBD16          --------->GLK1(1)<---------MYB59 >ARR14(2)   --------->ANAC55(2) <---------GLK1(2)--------->LBD16       ----------->ARR10 --------->TOE2(3) -ARR14(2) <-----------GT1<---------MYB46(3) <---------GLK1(1)      --------->ALFIN1 --------->ALFIN1   cttttgtttacttttacctaatggtcgatggtgacgattctttcaagagacccggagctgtgccttttaagtgggagatccgacccggtgtacctaaaac  7619200                                                                                  <------NtERF2                                                                                 ------>NtERF2                                                                                --------->RAP2.3(3)                                             --------->MYB46(3)                 --------->RAP2.3(2)                ------>ZmHOX2a(2)           >>>>>>>>>MYB98                      --------->DEAR3(1)                ==============================HOX2a_HOX2a                      --------->RAP2.3(1)            <---------YAB1         --------->AtMYB61                           --------->ATERF1(1)          --------->YAB1        --------->AtMYB61                             --------->LBD16         --------->ICU4         ------->GAMYB<------------MYB.PH3(2)          <---------ATERF1(1)    --------->LBD16            --------->MYB46(3)                             ------>NtERF2  <---------LBD16   <---------ARR11(3)    ------>ZmHOX2a(1)                  --------->ANAC46 ---------ARR14(2) <---------At4g35610 ------>ZmHOX2a(1)          --------->AHL20(2)     --------->ANAC46 -------->ARR14(2) <---------ZAT2  <---------ALFIN1               <---------AHL20(2)  --------->ARR14(2) ------>ANAC46--------->ARR11(3)<---------ALFIN1         ------>ZmHOX2a(1)   --------->DEAR3(1) -------->HVH21 =================================HOX2a_HOX2a     --------->AHL20(2)   <---------ARR14(2) -->DOF2 <---------YAB1        <---------MYB55(2)     ------>ZmHOX2a(1)     <---------LBD16         <   ccgacccggtgatgatgatccagctcttcttcaaccacctcctcctaacaaacttcctcctctcaaattaaaatcaactccgccgtcgaattcgccatct  7619300                                     --------->ORA47(1)                                     ------>NtERF2                                     <---------RAP2.6(3)                                    --------->RAP2.6(2)                                    --------->DEAR3(1)                                      ---------                                   --------->DEAR3(2)                                      <---------GLK1(2)                                  --------->At4g35610                     --------->At4g35610                             --------->HSFB2a(2)                    <----------DOF2        --------->ARR14(2)              <----------DOF2<---------HSFB2a(2)              ------>ZmHOX2a(1)            <---------ARR14(2)         <<<<<<<<<TBF1    --------->ARR14(2)               ------>ZmHOX2a(1)              <---------At4g35610 ---------MYB52(1)        <---------ARR14(2)              <---------ALFIN1<---------At4g35610   ccgtcgtcttcttcttctttcttctctgaatccagaagccgaccagtctctcccttcgctcctcctccgtctttcaagctgaaatcgccttcagattccg  7619400  Previous    Next  AGI:  At1g21690.1    Description:  EMB1968 (EMBRYO DEFECTIVE 1968); ATPase. similar to replication factor C 40 kDa, putative [Arabidopsis thaliana] (TAIR:AT1G63160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61903.1); contains InterPro domain Replication factor C; (InterPro:IPR013748); contains InterPro domain DNA polymerase III clamp loader subunit, C-terminal; (InterPro:IPR008921); contains InterPro domain Chaperonin clpA/B; (InterPro:IPR001270); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain AAA ATPase, core; (InterPro:IPR003959) Range:  from: 7615611    to: 7618594    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g21695.1    Description:  hydroxyproline-rich glycoprotein family protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G77400.1) Range:  from: 7618929    to: 7619908    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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