Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     <-----------GT1                                                                <---------MYB46(3)                                                               <---------WOX13(1)                                        ----------->ARR10     >>>>>>>>>ARR2                               --------->ARR11(3)            --------->ATHB12 -------->MYB52(1)             --------->ARR11(1)           <---------YAB1 -------MYB52(2)               <---------ARR14(2)         <----------DOF2 ------>MYB46(3)             <---------YAB1               --------------------->WRI1 ->ANAC46                    ----------->ARR10       <---------HSFB2a(1) ->ANAC58       <---------ATHB12--------->CCA1(2)    --------->HSFB2a(1) ---------->DOF2 ->ANAC58 --------->GLK1(1)  <---------TOE2(3)     <---------GLK1(2) <---------YAB1   ------->GAMYB--   acaaacgtagagaaatcaaacattaggcattaagatttgggatagatgtgctagaattttctttgattgttacgataaagaaacacaaccctccaaaaca  7580700                                                                             <---------YAB1            <---------------AGL15                                          --------->YAB1            --------------->AGL15                                          <---------ICU4            <---------DAG2                                                 -------->HAHB4            <----------DOF2                                               --------->ICU4           <---------ANAC58                                             --------->YAB1           <---------ANAC58              <---------YAB1                 <---------ICU4             --           ==========================================================================================           <-----------------AGL3     <---------WOX13(1)               <---------ATHB51            <-        <---------WOX13(1)           >>>>>>>>>ARR1--------->ANAC58     <---------AHL20(2)        <---      --------->ATHB12               >>>>>>>>>ARR2--------->ANAC46     --------->AHL20(2)       <----     <---------YAB1                 --------->ATHB12                   --------->ICU4         ------- ------->AHL20(2)  --------->MYB59 <---------YAB1 --------->ANAC58   --------->YAB1     <---------LBD16   tttttatatgattgctttttttaggtcgggtttttatatgattgttatttccaaggaaaactaaacacaaaaaataattatgaaacgtttttcggattgt  7580800                                                        --------->AHL20(1)                                                   --------->MYB46(3)                                                  ------>MYB83                                                  ------>MYB46(1)                                                 ----------->RAV1(1)  <---------YAB1                             <-----------GT1 ------->ICU4                            --------->AHL20(2) ============MADS_MADS                   --------->AHL20(1) --------YAB1                            <---------AHL20(2)      <---------YAB1 ------------AGL15                      --------->AHL20(2)     --------->CCA1(2) -----YAB1     <---------AHL20(2)   <---------AHL20(2)  --------->AHL20(2)                       <--- ---->GT1     --------->AHL20(2)   --------->AHL20(2)   <---------AHL20(2)                  <--------   tattattagtaatagattaaatctgtatttctaaattttaaattttattaccaacaaataaaatgatatgatttcatatatcaaattgtaagttttgtga  7580900                                                            <---------YAB1                                                          <---------ICU4                                  --------->YAB1          --------->YAB1    <---------HSFB2a(2)                             <---------YAB1              <---------YAB1     --------->HSFB2a(2)              --------->GLK1(2)  <---------ATHB12     <---------YAB1   <---------------AtSPL8     --- <---------ARR14(2) <---------MYB46(3)  <-----------------AGL2        <---------TOE2(3)           <-- --------->ARR14(2)<---------ANAC46     <-----------------AGL3      ------------>MYB.PH3(1)       <-- ------At4g35610 <-----------RAV1(1)  --------->GLK1(2)--------->YAB1 --------->DAG2 <---------AHL20(2) -ANAC46 ---------->DOF2   --------->YAB1<---------------AGL15      ---------->DOF2  --------->AHL20(2)   gcaaattttcaaaaagaaactgtgggtattcatcaatgataatctatatttggattattatcatgacaaaaaaaggttacagaaaaattaaacaattgta  7581000                                              ------->TEIL                                             <---------AtLEC2                                      <---------YAB1                                     <---------AHL20(1)                                     --------->AHL20(2)          <---------YAB1             <---------AHL20(2)        <---------AHL20(2)          --------->YAB1        <---------YAB1 ------>ARR11(3)      <---------HSFB2a(1)<XXXXXXXXXXXXXXXXXXXXMIR2111A* -------ARR11(3)      --------->HSFB2a(1)XXXXXXXXXXXXXXXXXXXX>MIR2111A/B                <---------AHL20(2) -------ARR14(2)    <-----------GT1<---------YAB1       <-------TEIL          --------->AHL20(2)   <-   gatattgtttttattttagatgaaaccttctgtccgtattataatttgcatctcgaggttcttatacgatttgtactgaataaaacatattttttttgtt  7581100                                                                 --------->LBD16                   <-                                                                ------>ZmHOX2a(1)                <---                                                                --------->LBD16                  ----                                           ------->TEIL        <---------LBD16                 ------         <----------DOF2                 *TSS                  --------->TOE1(2)           <------NtERF2   <---------ICU4                     --------->At4g35610      --------->TOE2(2)         <---------ANAC46   --------->YAB1                     <---------ZAT2        <---------ARR14(2)           --------->ETT(1)  <---------ATHB12                    <---------At4g35610   --------->ARR14(2)         <-----------HVH21 --------AHL20(2)      <---------CCA1(2) <---------SPL7--------->TOE2(3)              <-----------RAV1(1)   tttaatcataactttcccaaaaaccatctcttccatcgctagctgtaccggtttcaatctcaaatcctgggaattgaaatttgtttctctgtcggagaat  7581200                                                                                  ------>ZmHOX2a(1)                                                                                  --------->LBD16                                                                    =====================HOX2a_HOX2a                            <---------ZAT18       ------>ZmHOX2a(2)======================HOX2a_HOX2a                          ------>NtERF2      <------NtERF2 <-----------HVH21      ----------->GT1        <---------ZAT14   --------->LBD16  <---------DEAR3(1)      <------ZmHOX2a(2)           ------ --------YAB1             <---------ZAT18 <------NtERF2  <---------At4g35610      =================== ------ICU4             <---------LBD16 <---------DEAR3(1) <----------DOF2     <---------ATHB12<----- ----->YAB1      --------->REM1(1) ------>ZmHOX2a(1)     --------->At4g35610  <---------ARR14(2) <--- --->GLK1(2) <---------At4g35610   ======================HOX2a_HOX2a------>ZmHOX2a(2)          <-----   catcatcgacttctctgctacttctctccgcgctctccttcgtcgtcgtcgatctcttcagcttcaccgatctcatttccaatcctgaaaaatcgatgtg  7581300          >>>>>>>>>ARR2          >>>>>>>>>ARR1        <---------YAB1       xxxxxxxxxxxxxxxx>smallRNA(s)                    ------->TEIL     ------>ZmHOX2a(2)       <---------DAG2         --------->ANAC58   --------->AGP1      <------MYB83                 --------->ANAC58 --->ALFIN1            <---------MYB46(3)           --------->ANAC46 ===========HOX2a_HOX2a<------MYB46(1)              <---------ANAC55(2) ----------AtSPL3     <---------AtMYB61 <---------TOE2(3)                     ------>ZmHOX2a(2) ------SPL7          <---------MYB52(1) <---------TOE1(3)         --------->ALFIN1             <----- ----------AtSPL8   <-------GAMYB<---------YAB1     --------->ANAC55(2)     <---------ARR14(2) ------   gtactgatctacgattgtgctccgttggtagccttatgaattagggtttttcttacgcatcttcgtatgtggagattggatcgtgttcggaaaacttctg  7581400                                                                                     <---------ANAC55(1)                                                                                     --------->ANAC55(1)                                                                                     --------->ANAC55(2)                                                                                     <---------ANAC55(2)                                                                           ------>ZmHOX2a(2)                                                                           ==========================                                                                          ===========================                                                                          <------ZmHOX2a(2)                                                                         --------->GLK1(2)                                                           ------>NtERF2 <---------ARR11(3)                                                           <---------RAP2.6(3)      <-------TEIL                                                --------->At4g35610      <---------AGP1                                <----------DOF2 --------->ATERF1(1)      <---------ARR14(2)                          =============HOX2a_HOX2a------>NtERF2          --------->ARR14(2)                          <------ZmHOX2a(2)     <---------At4g35610      <-----------ARR10         <-         <---------At4g35610    ------>ZmHOX2a(1)--------->DEAR3(1)      --------->ARR11(3)    <----- <<<<<<<<<SUP    --------->ARR11(3)             <------NtERF2           <------ZmHOX2a(1)   <-------- ----HSFB2a(2)   <---------GLK1(2)             <---------RAP2.3(1)      <---------GLK1(2)   <-------- --->HSFB2a(2)   <---------ARR11(3)            <---------ATERF1(1)   <-----------RAV1(2)------->TEIL   gacactgtcttcgctgctagatttttggatcatccttttgcgaaaatggcagcgccaaggccgactggaggccaggatctgttcgatacgtatttcagga  7581500   <---------ARR14(2)   --------->ARR14(2)                                          --------->ARR14(2)             <<<<<<<   <---------GLK1(2)                                        ============================HOX2a_HOX2a ----------->ARR10                                    --------->LBD16                      <-------TEIL =HOX2a_HOX2a                                         <---------LBD16                     <---------ARR11(3) =HOX2a_HOX2a                           <-----------RAV1(1) ------>ZmHOX2a(2)             --------->ARR14(2) --------At4g35610              --------->At4g35610  <---------HSFB2a(2)                  <---------ARR14(2) -ZmHOX2a(1)                    <---------ZAT2       <---------LBD16                  <-----------RAV1(2) -LBD16 <---------AtLEC2        <---------At4g35610  --------->HSFB2a(2)  <---------ICU4 <---------GLK1(2) ---RAV1(2)      ----------->GT1--------->ZAT2<----------DOF2  <---------ARR14(2)------>ZmHOX2a(1)   gagcagatttggatggagatggtcatattagtggagctgaggctgtcgctttcttccagggatcgaatttgcctaaacatgtccttgctcaggttcttct  7581600  Previous    Next  AGI:  At1g21630.1    Description:  calcium-binding EF hand family protein. similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT1G20760.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN64708.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47530.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain EPS15 homology (EH) (InterPro:IPR000261); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Polyadenylate-binding protein/Hyperplastic disc protein; (InterPro:IPR002004) Range:  from: 7581141    to: 7588140    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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