Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                    ------->TEIL    --------->ARR14(2)                                             <-----------GT1    <---------ZAT18   <---------ARR14(2)                                    <---------CCA1(2)           --------->ZAT18<---------ANAC46                                --------->AtLEC2               --------->ALFIN1<---------ANAC58                              <---------ANAC58          <---------AHL20(2)     <---------ANAC58                              <---------ANAC58         --------->AHL20(2)      <---------RAP2.6(2) -DOF2                       <-------TEIL--------->AHL20(2) --------->ATHB12  <---------LBD16  ------   tgttatcccataacataacttaaatttgggatgcatgcatatattatatacttcatataaaatgagtggacctcataagttgcggtttcgatttttatca  7496700                                              <---------GLK1(1)                                          --------->ANAC46                                 --------->YAB1                                          --------->ANAC58                 --------->YAB1  <------ZmHOX2a(1)               <---------DAG2             --------->ANAC58    <---------YAB1  <-----------GT1               <----------DOF2    ----------->RAV1(1)         <---------AHL20(2)  --------->ANAC58           <---------ZAT18        <---------ALFIN1            --------->AHL20(2)  --------->ANAC58  ----------->RAV1(1)           --------->ANAC58       XXXXXXXXXXXXXXXXXXXX>MIR779.1     <---------TOE2(3)  --------->MYB52(1)            --------->ANAC58   <----------DOF2     ---------->DOF2   <---------TOE1(3) --->YAB1  --------->ZAT18    <---------ALFIN1--------->GLK1(1)  <---------YAB1  ------->GAMYB  -----   aaaacaacagttgtccactttttgattttgacacacccacattcaagcatctcctttcttctatattattactcaaagaataacaccccctaaggataac  7496800                                                                                       <---------AHL20(2)                                                                                      --------->AHL20(2)                                                                           <---------ANAC58                                       <---------AHL20(1)                  --------->ANAC55(2)                          --------->ATHB12                                 <---------ANAC55(1)                          <---------ICU4                                   <---------ANAC55(2)                         <---------ATHB12                                  <---------ANAC58                       --------->WOX13(1)                                  <---------ANAC46                     <---------MYB52(1)<---------ARR11(3)                 <---------TOE2(3) ---->ZAT6<---------ATHB12<--------HAHB4                                 <-----------GT1           <-   accattacacaaatcaattctcagttaatcatttgtttcaatatatgttagtacttaagaaatattcgaatagttttacgtattcaaattttataaattc  7496900                                                                                                 <---                                                                                      --------->ANAC46                                                        --------->AHL20(2)         --------->ARR14(2)                                                        <---------AHL20(2)         <---------ARR14(2)                --------->ANAC46                    --------->AHL20(2)             ------->TEIL  ----                --------->ANAC58            --------->AHL20(2)                     <-----------HVH21           <-----------GT1 <---------ANAC58 --------->ATHB51                    --------->ANAC55(2)       <---------AHL20(2)  <---------ANAC58 -------->ATHB1                     <---------TOE2(3) <---       --------->AHL20(2)  <---------ANAC46--------->ICU4--------->AHL20(2)  <-----------GT1<--------    ----------->GT1  --------->ICU4        <---------ATHB12                 <---------AHL20(2)   ----  ------->TEIL  --------->bZIP60(2)        <---------ATHB51  --------->AHL20(2)<---------TOE1(3) ---- --------ATHB12 --------->ANAC58        <---------AHL20(2)  --------->AHL20(2)<-----------GT1    <---   aatgaatgtttaattaccaagtcattttggcttggaatctattcaattattcaaaaaaataaataaaaaatactgcattttaacgtatcagccagtcaat  7497000              --------->DAG2             ---------->DOF2             =========================bZIP_DOF      -------->ABF1      <-------MYC2      <-------MYC3      ------->MYC2      ------->MYC3      ------->MYC4           <-------MYC3      <-------MYC4           ------->MYC3     <---------ANAC55(2)    <---------TGA1a     --------->ANAC55(2)    --------->O2     <---------O2           --------->ANAC58     --------->O2           <---------O2     --------->ANAC46       --------->ANAC55(1)     --------->TGA1a        --------->ANAC58     ===================bZIP_DOF     ------>ZmHOX2a(1)     <---------TGA1a        ==========================bZIP_DOF     ===================bZIP_DOF   <---------At4g35610 ------AHL20(2)             ==========================bZIP_DOF ----->AHL20(1)             --------->ANAC46                         <---------AHL20(2) ------AHL20(1)             --------->TGA1a                    <-----------GT1 -ATHB12<-----------HVH21 <---------ALFIN1                   <------------------------ANAC81 ----->ARR11(3)         <---------ALFIN1         <----------DOF2 <------------------------ANAC81 ----->AHL20(2)        --------->MYB46(3)  <----------DOF2  <------------------------ANAC81 ------ARR11(3)  <---------ICU4    ----------->RAV1(2)  <---------AHL20(2)   atattacacgtgtcataaagcattacccacacgtttctcctgcctctttccctttcatttttttttttcattttttttgtttcttctcttgttgttgtta  7497100                                                         ----------->GT1                                                    -------->HAHB4                                                    --------->YAB1                                                   <---------YAB1                                                 --------->YAB1                                                --------->AHL20(2)                                <--                      <---------ALFIN1  --------->ARR11(3)                                        ===            <---------AGP1              <---------ARR11(3)                         --------->ANAC58           <---------ZAT2               --------->AHL20(1)                    <----------ID1    <----       --------->STY1(2)                <---------AHL20(1)            <------NtERF2--------->ANAC58       <---------STY1(2)      *TSS     --------->AHL20(2)<---------ZAT6  <------ZmHOX2a(1)  ---------   tcttcttctagctagctctgtgaaacacttcaaatgaacaaatatatcaaataataatagtgtaattaagtcggaggaaaacaacaagaacccagaaaga  7497200                                                                                <---------ANAC46                                                                                <---------ANAC58                                                                                <---------ANAC58                                                                               <---------TOE2(2)                            <----------DOF2                           ------>ZmHOX2a(1)                           ------>ZmHOX2a(2)                      --------->ARR14(2) ----ZmHOX2a(1)          <---------ARR11(3)                       <---------ARR14(2) =================================HOX2a_HOX2a                    <---------GLK1(1) -----------AtSPL8       --------->ARR11(3)      <---------YAB1  --------->GLK1(1) ->DOF2         ---------->DOF2     <----------DOF2     <----------DOF2        <---------TOE1(2)   ggaacgaagaaactaattcaaaggtatgatcttttattctttgagagaattatgttttctttgtagcaaatcctctggtcttacgtttagtcactgaatt  7497300               <---------ARR11(3)               --------->GLK1(2)               --------->ARR11(3)         --------->LBD16        <---------HSFC1(1)        <---------HSFB2a(2)        --------->HSFB2a(2)                            <---------ICU4        --------->HSFC1(1)                             --------->YAB1       <---------LBD16                                 --------->ZAT6  <---------------AGL15                         <-----------GT1                                ------  --------------->AGL15                     --------->AHL20(2)                                 <-----  <---------ALFIN1    --------->ANAC46      <---------AHL20(2)                      --------->At5g28300 ----------------->AGL2                   --------->TOE2(3)               ----------->GT1      <----- <-----------------AGL2                   <----------DOF2        <----------DOF2   ----------->GT1 <- ----------------->AGL1                 ------->TEIL  <---------ATHB12<---------TOE1(3)        <----- <-----------------AGL1        --------->WOX13(1)   --------->WOX13(1)<---------TOE2(3)        ------   tgttccacttctggaaaaatctagacaccagagcaatctatgaactttaatttccaatcactaccgtcttttgaggttgtaaaatcggtaaatggcagat  7497400                                                                                         --------->ANAC46                                                                                         --------->AtLEC2 <-----------GT1                         <----------DOF2                          --------->HSFB2a(1) --->ARR14(2)                       <---------At5g28300                           <---------HSFC1(2) ----ARR14(2)                     --------->ZAT14                                 --------->HSFC1(2) ----GLK1(2)                      <---------ZAT14                                 <---------HSFB2a(1) ----------GT1            <------ZmHOX2a(1)                                      --------->ANAC58 ----ARR11(3)       <---------YAB1--------->ZAT18           ---------->DOF2      --------->ANAC58 --->ARR11(3)<----------DOF2<------ZmHOX2a(2)          --------->AHL20(2)    <------ZmHOX2a(1)   ttttcactctcattcctttgtggtgataggatcaagttcaccgcttcattttagtcattaaacaaagatggtgatgggaggagaagcatccatggaactg  7497500                                                                                  ===================                                                                                  ------>ZmHOX2a(1)                                                                                  <----------DOF2                                                                                ------>ZmHOX2a(2)                                                                               <------ZmHOX2a(2)                                                     --------->RVE1(1)        <---------ARR14(2)                                                     <---------GLK1(1)        --------->ARR14(2)                                                     --------->GLK1(1)        --------->ARR11(3)                                                     --------->CCA1(2)        <---------ARR11(3)                                          --------->DAG2           --------->GLK1(2)                                       ---------->DOF2           <---------At4g35610               --           <---------At4g35610       <------ZmHOX2a(2)       --------->ALFIN1========================         <---------HSFB2a(2)  --------->GLK1(2)     --------->ARR11(3)       <------ZmHOX2a(1)     --         --------->HSFB2a(2) <---------GLK1(2)      <---------ARR11(3) <---------At4g35610     <-----   gaccagtgttttcagaagatgaagatggaaggaatctcgatcaaagagtggaaagatatccctgtggagcttctgatgaggatcctttcccttgttgatg  7497600  Previous    Next  AGI:  At1g21400.1    Description:  2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative. similar to 2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative [Arabidopsis thaliana] (TAIR:AT5G09300.1); similar to 2-oxoisovalerate dehydrogenase alpha subunit, mitochondrial precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95968.2); contains InterPro domain Dehydrogenase, E1 component; (InterPro:IPR001017) Range:  from: 7493415    to: 7496699    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g21410.1    Description:  SKP2A; protein binding. similar to ATSKP2,2/SKP2B (ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G77000.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO60926.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 7497130    to: 7499568    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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