Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        <---------ALFIN1                    --------->DEAR3(1)                    --------->RAP2.6(2)                 --------->ANAC58        --------->AHL20(2)                 --------->ANAC46        <---------AHL20(2)                 --------->ANAC58       --------->AHL20(2)                                        ---             --------->ANAC46           <---------AHL20(1)                                   <------ZmHOX2a(1)            xxxxxxxxxxxxxxxx>smallRNA(s)<---------AHL20(2)--------->ANAC55(2)               ---------       <---------ANAC58      ----------->GT1            <-----------GT1                    >>>>>>>GRF7       <---------ANAC58     <---------TOE2(3)   --------->YAB1                --------->AHL20(2) ----   tcaaattttgcttaaacacaagccgcacttaatgtaaaacaatttttttagaataattttacataatattcaaaaaaaaaaaaaatggtttgtcaggaaa  7475700                                                                 <-------TEIL                                                      --------->TOE2(3)     <---------AHL20(2)                             <---------ARR11(3)     --------->AHL20(2)                             --------->GLK1(2) ------>DAG2                <<<<<<<<<SARD1          --------->ARR11(3) -->GT1  <---------AHL20(2) <<<<<<<<<CBP60g        --------->RVE1(1)                          <------ZmHOX2a(1) ------>DOF2      <---------YAB1                   --------->CCA1(1)                  --------->TOE2(3)   aaagtatttttttaattcttatgaaacccaaatttcaggtcgaataaactaaaaaatcttagagaaattcatccaattgtttaccaaaacttaataggaa  7475800                                                                        --------->DEAR3(1)                                                                       <------------AtMYB77                                                                       --------->DEAR3(2)                                                                       --------->ATERF1(1)                                                                       <---------MYB55(2)                                                                      <---------ATERF1(1)                       ----------->GT1                    <---------ALFIN1 --------->DEAR3(1)                      <---------TOE2(2)                  <---------SPL7--------->MYB46(3)                      <---------TOE1(2)                 --------->ANAC58--------->RAP2.6(2)                --------->ARR14(2)                      --------->ANAC58------->GAMYB                <---------ARR14(2)              ---------->DOF2    <------NtERF2--------->DOF5.7(2)               ------>MYB83                 --------->ANAC58     --------->ANAC58               ------>MYB46(1)              --------->ANAC58     --------->ANAC58             <---------MYB59              --------->MYB52(1)--------->ANAC46   ------->MYC3          <------ZmHOX2a(1)              --------->ARR14(2) --------->ANAC58   <-------MYC3----------        --------->ANAC58                 <---------ARR14(2) --------->ANAC58<---------ALFIN1        --------->ANAC58              >>>>>>>>>TBF1    <---------------AtSPL3<---------TOE1(2)   <---   taaatctaacaaggaccaaattcgaaggtaacttgacgaagaagaaacggaaaagaagacgcacggctcggcaaccgcccacgtttacttcgaaacaatt  7475900                                  ------->MYC3                                  <-------MYC3                                  ------->MYC2                    <---------At4g35610                                           <---------ZAT6   --                    --------->At4g35610                                    ----------->TBP    -------              ------->TEIL        <-------MYC2                     --------->ANAC46         ------->TEIL      <-----------GT1      <---------ALFIN1  <---------ALFIN1      <---------ALFIN1   <-------TEIL -- -->CBF   XXXXXXXXXXXXXXXXXXXX>MIR162A/B    ------>ZmHOX2a(1)   <-------TEIL      ----------->GT1 <-- --------GT1 <---------ALFIN1  <---------ALFIN1        --------->AtLEC2 --------->LBD16<---------ANAC55(2)   cacacatttatcgatgcacctctgcttccacacacacatgctcttcctcacctctccattcacacatacacacccgtatatatagagttacatgaactca  7476000                        <---------AGP1                        <---------ARR11(3)                        --------->ARR11(3)                                                  ---------                       <---------CCA1(2)                                                 --------->ANAC46             --------->ZAT18                                                     <-------TEIL           --------->ZAT18                --------->ANAC58                     <---------SPL7      --           <---------ZAT18------>ZmHOX2a(2)                                   <---------ANAC58  <----   --------->ANAC46--------->STY1(2)      --------->ANAC46                    <---------ANAC46  ----- ------->YAB1<---------ZAT18 ------------>CBF   --------->YAB1                <---------ANAC58------- ----->CBF --------->PCF2<------ZmHOX2a(2)--------->ANAC58    <-------TEIL   --------------->AtSPL3-- ------->AHL20(2)  <---------STY1(2)<-----------HVH21     <---------------AtSPL8 --------->SPL7 ----- -------ATHB51<---------ALFIN1  --------->GLK1(2)  --------->YAB1       <-----------RAV1(1) ---------   attatacaccaagtgcccacttgctagatctcacaatctttcacacccaaaaatcatataagagtacatgaaaaatgttgccgtacattggacacaacag  7476100                        --------->LBD16                       --------->ETT(1)        ----------->RAV1(1)   ----------->GT1      --------->At4g35610<------NtERF2             <---------HSFB2a(1)   --------->ZAT2      <---------ANAC46            <---------HSFC1(2)   --------->At4g35610<---------LBD16  --------->LBD16  --------->ANAC46    ----------------->AGL1       --------->HSFB2a(1) >MYB52(1)            <-----------------AGL1  --------->ALFIN1                        <---------ANAC58 ------>P          <---------MYB52(1) <---------ANAC46                                <---------ANAC58 -----At4g35610   <---------At4g35610 <---------HSFB2a(2)                           ------>NtERF2 ---->At4g35610   <-------GAMYB       --------->HSFB2a(2)                           --------->LBD16 -->MYB46(3)     <---------ANAC58  <---------ARR14(2)   <---------ANAC58          <---------LBD16 ------->MYB52(1)<---------ANAC58  --------->GLK1(2)    <---------ANAC58       <---------ZAT14 ---->ZAT2       <-----------RAV1(1) <---------LBD16 <----------DOF2           <---------At4g35610 -->RAV1(1)   --------->ARR14(2) <---------GLK1(1) --------->HSFC1(2)     <---------YAB1     ------>ZmHOX2a(1)   ctaccagcagcaccagtttccgttgccggagatggaaattccggagaagtggaagctttcttacgaacaagaggctattactgctccggcttgtcctcgt  7476200                                                                                                  ---                                                                                                  <--                                                                                                 <---                                                                                                <----                                                                                <---------MYB52(1)<--                                                                              <---------MYB46(3)<----                                                                             <------NtERF2  ---------                           <-----------GT1                     --------->HSFB2a(2)         ----------                          <---------YAB1                       <---------HSFB2a(2)      --------->ANAC58                       <---------YAB1                   <---------ARR11(3)  ------>NtERF2 ---------->DOF2                     ----------->GT1                    <---------GLK1(2)   <---------RAP2.6(3)<-----         ----------->RAV1(1)    --------->MYB46(3)    ----------->ARR10<--------P       --------->ANAC58   tgtgcatcgtccaacaccaagttttgttattacaacaactacagcttgtctcagcctagatacttctgcaagggttgccgtcgttactggacgaaaggcg  7476300          --------->HSFB2a(1)     --------->ANAC46     --------->ANAC58     --------->ANAC58    <---------LBD16      <---------RAP2.6(2)                                           <---------ARR14(2) ------>ARR14(2)    <------MYB46(1)                                            <------NtERF2 ---------ARR10     <------MYB83                                              <------NtERF2 ----GAMYB<---------HSFB2a(1)                                                 --------->LBD16  <----- -----DEAR3(2)     <---------AtMYB61                                         --------->RAP2.6(2) -------ARR14(2)  <--------P                                      ---------->DOF2      --------->ARR14(2) -----MYB46(3)   <---------MYB52(1)                      --------->ZAT14    ----------------->AGL1 >DAG2  ----------->RAV1(1)   <-----------HVH21          <---------ZAT14    <---------LBD16  <------- >DOF2--------->LBD16 --------->ALFIN1          <---------At4g35610    --------->ALFIN1--------->GLK1(2) ----DEAR3(1)   ------>ZmHOX2a(1)               --------->At4g35610 --------->DAG2    <---------GLK1(2)   gttctctccgcaacattcctgtaggtggaggctgtcgcaagagaagtcgaagcagacagaacagtcacaaaaggtttggccggaacgagaatcggccaga  7476400                                                             <------NtERF2                  ------>NtERF2                                                             <---------At4g35610        ------>ZmHOX2a(2)       <<<<<<<<<GT-1                                --------->ATHB12               <---------WOX13(1)       <-----------GT1                 ------>ZmHOX2a(1)    <---------ERF1      ----------->HVH21 ----At4g35610    <---------WOX13(1) ----------->RAV1(2)   <---------DEAR3(1) --------->ANAC55(2)  -- ----RAV1(2)   <---------YAB1--------->ZAT14 <---------YAB1<---------RAP2.3(3)<---------ANAC55(2)  <-   tggtcttattaaccaagatgatggattccagtccagccctcctggttctgatattgatttggctgcggttttcgcacaatatgtgactgatcggagccct  7476500                                   <---------At5g28300                                 <-------TEIL                               <---------ARR14(2)                               --------->ARR14(2)                               <---------GLK1(2)      --------->YAB1                             <---------YAB1          <---------ATHB12            --------->ARR14(2)                           --------->YAB1         --------->AtMYB61              <---------ARR14(2)                          <------ZmHOX2a(2)      --------->MYB46(3)              --------->ARR11(3)                      ------>ZmHOX2a(2)         -------->P <----------DOF2      <---------GLK1(1) <--           --------->ZAT6 <---------ATHB12     ------->GAMYB                    --------->GLK1(1) <--     ----------->GT1 <------ZmHOX2a(2)        <---------MYB55(2)    <----------DOF2      --------->ANAC58 ------->HSFB2a(2)  --------->ARR14(2)        <---------MYB111(2)--------->GLK1(2)       --------->ANAC58 --------HSFB2a(2)  <---------ARR14(2)        --------->MYB46(3)<---------GLK1(2)<---------ARR11(3) -   tctagtacagataatactactggatccgatcaagattcaccgataacaacaaccactcatgctttagaatctttgagttgggatatctgccaagaaactg  7476600  Previous    Next  AGI:  At1g21330.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G40680.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446) Range:  from: 7474691    to: 7475671    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g21340.1    Description:  Dof-type zinc finger domain-containing protein. Identical to Dof zinc finger protein DOF1.2 (DOF1.2) [Arabidopsis Thaliana] (GB:P68349;GB:Q1PFU5); similar to Dof-type zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G52440.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO60866.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851) Range:  from: 7476075    to: 7476857    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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