Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100    --------->ATHB12                          <----------DOF2  --------->ATHB51                       <---------AHL20(1)  --------->AHL20(2)                     <---------ARR11(3)  <---------AHL20(2)                     --------->ARR11(3) --------->AHL20(2)                      --------->AHL20(1)                            ---------->DOF2 <---------AHL20(2)                     --------->RVE1(1)                   <---------AHL20(2)   ---- <---------AHL20(1)                     --------->CCA1(1)                 <----------DOF2        ---- ----->GT1                      ------>ZmHOX2a(2)                      <---------MYB52(1)        <--- --ARR11(3)                  --------->ATHB12                       --------------->AtSPL8       ----   taaattatttgtaacaacaatatagttgaattgatcggacaaatatcttttgttagaaactcgaacttaattcgttctttatttgctatcaaagactata  7474300                                                                                              <------                                                                                             --------                                                                                             --------                                             ----------->GT1                              --------->YAB1                                             <---------ANAC55(2)                         <---------ATHB51              ----------->GT1                --------->ANAC55(2)                         <---------ATHB12       ------->TEIL                        --------->AHL20(2)                      --------->WOX13(1)      <---------AtLEC2                     <---------AHL20(2)                     --------->AHL20(2)    <---------YAB1                     <---------AHL20(2)                         <---------AHL20(2) ----->ANAC55(1)                       --------->AHL20(2)                        <---------ATHB12 ----->ANAC55(2)               <-----------GT1    <---------ANAC58         <---------bZIP60(1)<------ ------ANAC55(2)     --------->ATHB12  --------->ICU4                      --------->bZIP60(1)------- ----->ANAC46 --------->YAB1  ----------->HVH21   <---------ANAC58 --------->TOE2(3) <---------ATHB12   cgtattatgcatgtaatagtaacttattggatttgacggtattaattaagtaacttggcaaatggataaccaaaatgatgtcaataaatcaataataata  7474400                                                                                                    <   --------->DEAR3(1)                                                                           <----  --------->DEAR3(2)                                                                            <---- ---AHL20(2)                                                                                   <----- ->AHL20(2)                                                                                 <-------- ->YAB1          ----------->GT1                                                            <-------- ---YAB1        ----------->GT1                                      <----------DOF2        <-------- -->AHL20(1)    <---------ZAT6                               <-----------GT1             <---------ANAC46   ttgtaccgacgcttggaagtgttaaaacgatagaatgtagaagagagtgcaagtgatcaaatgttacgatgctttgtttactaaatttgtggtgtcttgc  7474500                                                                                     <---------AHL20(2)                                                                                  --------->AHL20(2)   --------->ANAC46                                                               --------->AHL20(1) -------TEIL                                                                      <---------AHL20(1) -----ANAC58                                                               --------->ANAC58 -----ANAC58                                                               --------->ANAC58 ----LBD16                                                                 --------->ANAC46 -ANAC58                                                        <---------YAB1    <---------AHL20(2) -ANAC46                                                   <---------AHL20(2)  --------->YAB1 -ANAC58       --------->At4g35610   <---------ATHB12----------->GT1     <---------ALFIN1         <--   ggttcacgagaacaagatgctgagaatgtaagtgactaaatcatttacacacatactgtatataatatgatggctccacgataatattttaagagagtgt  7474600                          --------->ATHB51                          <--------ATHB1                         <---------ATHB12                 ------------>CBF                     ------------>CBF                     --------->WRKY18(1)                    <---------ARR11(3)          ---------->DOF2               ------------>CBF              --------->TOE2(3)          <---------ARR11(3)           --------->TOE2(3)<------MYB46(1)          --------->ARR11(3)         <-----------GT1    <------MYB83         <---------CCA1(2)<---------ICU4   <---------TOE2(3)  <---------ATHB12     <------ZmHOX2a(1)   <---------ATHB51  <---------TOE1(3)--------->WOX13(1) ----------CBF<-----------GT1       <<<<<<<<<<GT-3b    --------->MYB59   ---------->DOF2   *TSS   aattgtaggatatatcttacaatatcaataattcatatttttcttaacgtaaaagattaggtcaatcaaacaaaaaaaagaatgaaacgatttgcatcat  7474700         --------->ICU4                                                  --------------->AtSPL8       <---------AHL20(2)                                                ------->TEIL  -------->HAHB4       <---------ICU4                                                   <---------AtLEC2      --------->AHL20(2)                                               <-------TEIL    --------->YAB1   --------->AHL20(2)                                            <---------YAB1       <---------YAB1   <---------AHL20(2)                                         --------->ICU4 ------->TEIL  --------->AHL20(2)                                          <---------ATHB51      --------->YAB1   ccaaattaataaatattaagacatattttaaacaataagtttttgttttccgataaactttgaaattatgaaatgcatgtactcgataataatactctta  7474800                                                                          --------->ANAC58                                                                          --------->ANAC58                                                                          <---------ANAC46                      ------->TEIL                                        ----------->GT1                      --------------->AtSPL8                              <---------ANAC55(1)                     <---------AtLEC2                                     <---------ANAC55(2)                    <-------TEIL                                          --------->ANAC55(2)              <---------YAB1         ---------->DOF2           <------ZmHOX2a(1)        <---------MYB46(3)           --------->ICU4           --------->YAB1           <---------TOE1(2)      <-----------RAV1(1)        <---------AHL20(2)       --------->YAB1             <---------LBD16--------->TOE2(3)        --------->AHL20(2)------->TEIL            <---------ZAT6  <---------ALFIN1  --------->ALFIN1   tgtaaaacaaaaaattatgaaatgcatgtactcgataatcaaagttgaactagtgatggctctcaggaacactcttacgtaaaaatgtgttggatagttt  7474900                          --------->ZAT18                        <---------WOX13(1)                      <---------ICU4                      --------->ATHB12                      -------->HAHB4                     <---------YAB1                     --------->ICU4                                                              <---                  --------->ICU4                                                        ------>ZmHOX2a(2)              --------->TOE2(3)                                     <-------GAMYB      <------ZmHOX2a(2)             ----------->GT1                    ------->GAMYB      --------->ALFIN1  <---------GLK1(1)             <----------ID1       <-------TEIL --------->MYB46(3)<---------ANAC46    --------->GLK1(1)   agtaaccaagagaaaacgtcaaaatgattgcacaaattcatagactctaacagacgatgaagacatagtgtgttggaaggggaagggagatcgcttcaaa  7475000                         <---------RAP2.6(2)                         <---------DEAR3(1)                        <---------ORA47(1)                                                      -----                        --------->SPL7                                                  --------->MYB52(1)                        --------->RAP2.6(3)                                         --------->AtMYB61              --------->ANAC58                                                    ----------->RAV1(1)            ---------->DOF2                                   <------NtERF2      ------->GAMYB  <----          --------->ANAC58                                   ------>NtERF2       --------->AtMYB61          --------->ANAC58                         --------->At4g35610--------->ALFIN1<---------MYB52(2)          --------->ANAC46              --------->YAB1   --------->ALFIN1       --------->MYB46(3) ------ATHB12 --------->ANAC58        --------->GLK1(2)--------->ALFIN1         <---------MYB55(2)   tcaactttcaacacgaaagaaacttggacggccataagagaatcaaaaccaagagcagagtggcaccaaggagtttggctcaaccaccacaaaccgaagt  7475100              <---------ANAC46         <---------ANAC58         <---------bZIP60(2)         <---------ANAC58                                                                           <    --------->YAB1   <<<<<<<<<MYB1     --------->ANAC58                --------->At5g28300   <------- <----------DOF2     <<<<<<<<<MYB2     --------->ANAC58               ----------->GT1<---------ANAC46 ---->ARR11(3)<---------ANAC58        <---------LBD16 <<<<<<<<<<<<<<<<<LFY           <---------ANAC58 -----ARR11(3)<---------ANAC58   ---------->DOF2   ----------->GT1--------->ALFIN1   <---------ANAC58   tctctttcatgacttggcttgcagttagaaatcgtttaagcacgggagatagaatgttacaatggaacatgggggtgaattcatgctgcgttttctgtca  7475200  Previous    Next  AGI:  At1g21330.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G40680.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446) Range:  from: 7474691    to: 7475671    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version