Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             <------ZmHOX2a(2)                                                          <---------AGP1                                                          <---------ARR14(3)                                                          --------->ARR11(3)                                                          <---------ARR11(3)                                                          <---------ARR14(2)                                                  <---------ZAT2                   <-----------ARR10                                                  <---------At4g35610              ------->TEIL                                                  --------->ZAT2                   --------->GLK1(2)                                            ------>NtERF2 --------->ARR14(2)      <---------ARR14(1)                                           --------->DEAR3(1)                   --------->ANAC58                                         <---------ATERF1(1)               --------->ANAC58                                        --------->DEAR3(1)--------->ARR14(3)<---------MYB52(2)              <-----------GT1         <---------ATERF1(1)<---------CCA1(2) --------->ANAC46           <---------GLK1(2)       <---------ANAC58     ----------->ARR10  --------->ANAC58         ------->GAMYB         <-----------HVH21 --------->GLK1(2)     --------->ANAC58             <      ----------->RAV1(1)     --------->ANAC46   ------->TEIL          --------->ANAC58         <----    ------>ZmHOX2a(1)    --------->TOE2(3) ----------->HVH21------>ZmHOX2a(2)   --------->ANAC58----- ----->ARR14(2)  <---------ALFIN1  <---------ANAC58    <--------P      --------->ANAC46         <----   atactcctcaacagaatcaccaccttgcctcaacgtcgcgagcctccgacgaagctggtagatcttcaaatcgacgcaaggaacgaatctaagtctgaga  7442600     --------->ANAC58        --------->REM1(1)     --------->ANAC58       --------->SPL7     --------->ANAC46       <-------TEIL       <---------ARR11(3)   <---------ALFIN1      <---------ANAC58      --------->ARR11(3)             <---------MYB59 -----------GT1          <---------ANAC46      <-----------ARR10             --------->ANAC55(2) -----ARR11(3)           <---------ANAC58    --------->ANAC58      <---------At4g35610 ---->ARR11(3)          --------->HSFB2a(2)  --------->ANAC58      --------->At4g35610 -----GLK1(2)  --------->At4g35610     <----------DOF2          <-------TEIL <---------ANAC55(2)   ttttcccacgcttgatgagcagtcttcgcgtacatcacagactttacaagctcttcgctcatcaaattcatcagccaatacttaactattgttcgcatcg  7442700                                           --------->ZAT14                                   <------NtERF2                                   --------->At4g35610                           <---------ARR14(2)                           --------->GLK1(2)                         <---------HSFB2a(1)                         --------->HSFC1(2)--------->ZAT18                         <------MYB46(1) <---------------AtSPL3                         <------MYB83--------->LBD16                         <---------HSFC1(2)<---------ZAT14                         --------->HSFB2a(1)                                      ---------->DOF2                  --------->DEAR3(1)<---------ANAC46                          --------->HSFC1(1)                  <---------ANAC46 <---------LBD16                            <---------HSFB2a(2)               <---------DEAR3(1) <---------ERF1<-----------HVH21             <---------HSFC1(1)    <              <---------At4g35610<---------DEAR3(1)--------->WOX13(1)  <---------MYB52(1)         ---           ---------->DOF2 --------->ARR14(2)  <---------ZAT6<---------GLK1(2)--------->HSFB2a(2) <--       <---------YAB1 <------ZmHOX2a(1)  <---------------AtSPL8      <---------ANAC58             --- <---------AtLEC2<------NtERF2   <---------RAP2.3(3) <---------ATHB12<---------ANAC58             <--   tttccatggatgatagagcggcgaggaaggttctggctgcgggagagtactgtcaatgaaaccgattttgttcgtgagttcgagaaaagagcgaaatcga  7442800          <---------ANAC46          <---------ANAC55(2)          --------->ANAC55(2)          <---------ANAC58          <---------ANAC58          <---------bZIP60(2)         ----------->STF1        <---------TGA2(2)       ----------->HVH21       ----------->TGA1     <---------At4g35610                                            <---------ARR14(2)     --------->At4g35610                                            --------->ARR11(3)              -   --------->HSFB2a(2)                                              <---------ARR11(3)              <   <---------HSFB2a(2)                                              --------->ARR14(2)            <-- -----------GT1                                                <---------WOX13(1)           --------- ------>HSFB2a(1)                                          <--------P <---------LBD16   --------->At5g28300 -------HSFB2a(1)                                         <-------GAMYB       ----------->GT1 <------ ------>HSFC1(2)             --------->At4g35610         ----------->GT1    ----------->GT1 <-------- -------HSFC1(2)             <---------At4g35610 <---------GLK1(1) --------->RVE1(1)   ----------->GT1   aatttccagatgacgtagttgtcttcggcttcgctgagtttttcgatagagaaatcggagggttgattaatatctggagggagataatacggtgaatcgg  7442900               --------->ANAC58              <-------TEIL               <-----------TGA1             --------->ARR14(1)          <-----------HVH21             --------->CCA1(2)          --------->bZIP60(1)            <---------ARR14(2)  >>>>>>>>>>>>>>>>>LFY       <---------HSFB2a(2)        ---------->ID1            --------->ARR11(1)  ------>NtERF2         <---------At4g35610            <-----------GT1 -------->ETT(1)                --------->LBD16  <---------ZAT2                <---------DAG2 ---------ANAC46     <---------YAB1     <---------bZIP60(1)--------->HSFB2a(2) <----------DOF2 ---------HVH21--------->ANAC58--------->ANAC46  --------->ZAT2    <---------STY1(1)<-----------GT1 >ARR14(2)  --------->ARR14(2)<---------LBD16    --------->At4g35610        ---------->ID1 ---LBD16  <---------GLK1(1)<---------ARR14(2)   <---------At4g35610    <---------ANAC58 -ARR14(2)----------->ARR10 --------->ARR14(2) --------->ZAT14     *TSS <---------ANAC58  <----------DOF2   ggtcggataatggagatacgctcttgatagtttccgccattgtcgtcactgagctctgcttctaaaactctagggcttgcccttttttatccctttcgat  7443000                                        ------------------------>ANAC81                                     ------------------------>ANAC81                  <---------ICU4     <----------ID1                 <---------ATHB12    ----------->GT1         ---------->DOF2                     ----         --------->AHL20(2)         ------------------------>ANAC81      <----------DOF2        -----       --------->TOE1(3)          ------------------------>ANAC81  --------->ALFIN1            <-----       --------->TOE2(3)         ---------->DOF2       ---------->DOF2  <XXXXXXXXXXXXXXXXXXXXXMIR402-     <---------TOE2(3)      ------------------------>ANAC81--------->ARR11(3)            <-----------GT1   tttgactaacattaaacaaatcattttcaaaatgagaaagagaaaaaaaaaaaaaaaaaaagataaagagttgggcttaatgggccttgagtttccctcc  7443100                                                <-------MYC3                                                ------->MYC2                                        --------->ARR14(2)                                        <---------ARR14(2)                           <---------ANAC58     <-------MYC2                           <---------ANAC46     ------->MYC3                      --------->At4g35610     ---------->TaMYB80       ---------->DOF2<---------At4g35610  --------->ANAC58    ----------->RAV1(1)    <---------ANAC58--------->ANAC58                  <---------ARR14(2) ----->LBD16         --------->ANAC58  <---------MYB52(2)           --------->ATHB12                - ---->HSFB2a(2)      --------->ANAC58 --------->ANAC46             <---------YAB1                   < ----LBD16     --------->STY1(1)      --------->ANAC58       <---------TOE1(2)          <------ZmHOX2a(1) ----->NtERF2  <---------STY1(1)      --------->ANAC58 <----------DOF2       --------->ARR14(2)  ----   ggagcccaacaaagcccctagggaagctagcgtcgattgcaagaaacgcatatgcttctttccaacgttttgatttgtggatactagagaggatgtcaat  7443200                                                                          <------MYB46(1)                                                                          <------MYB83                                                                          ----------->GT1                                                                          <---------MYB46(3)                                                                         --------->MYB111(1)                                                                         --------->MYB55(2)                                                                         <---------MYB46(3)                                                                         <---------AtMYB61             --------->AtLEC2                                     ------>MYB46(1)             --------->ANAC58                                     -------->P             --------->ANAC58                                  <------NtERF2       <------MYB46(1)                              <---------GLK1(1)    --------->MYB111(2)       <------MYB83                       <-------GAMYB <---------ANAC58 --------->MYB46(2)     <---------WOX13(1)                  <---------MYB46(3)    --------->MYB46(3)   --------->ATHB12                     <---------AtMYB61<---------LBD16 <---------DEAR3(1)  --------->ICU4           ------>ZmHOX2a(2)   --------->CCA1(2)  ------>MYB83  <---------YAB1         --------->ARR11(3)<--------P   <---------ANAC58<--------P<---------ICU4 -------->YAB1           <---------ARR11(3)<---------WOX13(1) ------>NtERF2      <---------ATHB12 ---------ICU4   --------->MYB52(1)   <----------DOF2 --------->ZAT18<---------TOE2(3)    --------->LBD16 ----->YAB1  --------->ANAC46         <---------MYB52(1)----------->RAV1(2)      --------->ICU4   aaacatgattggtccaagcaaacagttgatcttcccttccctttggttgatatgagttccctggcaccaacaaggttggtgaaatcatttcccccaaaat  7443300                                                      <---------ANAC58                                                      <---------ANAC58      --------->MYB46(3)       <---------ICU4--------->ANAC58     ------>MYB46(1)          --------->ICU4 --------->ANAC58            --------->HSFB2a(1) --------     ------>MYB83 <----------DOF2 <---------ZAT18    <-------TEIL       ------->TEIL        ---------   --------->AtMYB61        --------->YAB1   --------->ANAC46        --------->ANAC46     <------ZmHOX2a(1)   gtataccacccattcttcaactttccttcttcataatggactcatacacgatatgtgcgtctctatctcacccgaaccttgtttttcttcaaggacctta  7443400                                                                      --------->AtLEC2                      <---------MYB52(1)                  <----------DOF2                 --------->GLK1(2)                       <---------ANAC58        <---------ANAC58                                 <---------ANAC58                          <-        <---------ANAC58                     --------->CCA1(2)        --------->ANAC58            <--      --------->ARR11(3)                    <---------ARR11(3)        --------->ANAC58           ----      <---------ARR11(3)                    --------->AHL20(1)       --------->WOX13(1)     <-------- ->TOE2(3)----------->HVH21<-----------GT1  <---------AHL20(1)      ---------->DOF2       <---------- -------->AGL1  <---------GLK1(2)<----------DOF2     <---------MYB52(1)              <-----------GT1-   atgtgtaagagcttgacagactctgtttttttcttctttgaatcaatatataagcgttggcttttcaacatcaagcaaactagttttttatcttaccatt  7443500  Previous    Next  AGI:  At1g21260.1    Description:  transposable element gene. copia-like retrotransposon family, has a 2.4e-23 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea) Range:  from: 7442207    to: 7442967    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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