Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                 ----------->RAV1(1)                                                                              --------->ANAC46                                                                            <---------ALFIN1     <------NtERF2 ----------->GT1                                          --------->ANAC46    -----   <---------DEAR3(1)    <-----------GT1         --------->YAB1             --------->REM1(1)  ------ --------->WRI1    --------->YAB1   <---------ICU4                  ---------->DOF2        ----------   tctcgtcgtcgatttctatagtcgtaataacctcttcaacatcacccagaatcatattcaaatgctgatcaaaagcctacaccacaaaaacaacaacaaa  7420500                                          --------->WOX13(1)                                      --------->ANAC46                            <---------TOE2(3)  --------->At4g35610                         ----------------------->TaNAC69(2)  <----------DOF2 ---->DAG2            <---------GLK1(2)------>NtERF2        <---------ANAC58                      <-- ---->DOF2      <-----------GT1       --------->ANAC58      <---------ANAC58              ----------- ->RAV1(1)    --------->AHL20(2)      --------->ANAC58<----------CDC5                   <---------PCF2   agtgagagtcttagaatttaacaagattatgaggttttctacgccaattagctctcgctgaggctttcgaaactgaaactcaacaaaatgggtccaaatt  7420600                                                            <---------At4g35610                                                            --------->At4g35610                                                       --------->DAG2                              <---------AHL20(2)      ---------->DOF2         <------ZmHOX2a(2)    --                          <---------ZAT6        --------->GLK1(1)            <---------ARR11(3)    -- -------YAB1              ----------->GT1     <------ZmHOX2a(1)              --------->ARR11(3)    <- ------>AGL3     --------->YAB1             <---------TOE2(3)            ---------->DOF2          <--   ttgatatttgtgaaaagaataaaaactagtgttaaattcaacgaataaggaattcaaaaaggagctcaaaatcgaaaaagatcacatctggttactggtt  7420700                                     --------->LBD16                                     <---------LBD16                               <---------ANAC58                        --------->ARR14(2)                        <---------ANAC58                               <---------GLK1(2)                        <---------ANAC58                               <---------ARR14(2)                        <---------ANAC55(2)  <---------DOF5.7(2)       --------->AGP1                        <---------ANAC46    --------->ZAT14            <---------ARR11(3)                        --------->ANAC55(2) <---------ZAT14            --------->ARR11(3)                       --------->SPL7--------->At4g35610     <---------ANAC58                       ------->TEIL  <---------At4g35610------>ZmHOX2a(2)                       <-------TEIL  ------>NtERF2      ==========================HOX2a_HOX2a           <---------MYB46(3)  <---------ANAC58  <-----------HVH21   ----------->ARR10              -           ----------->GT1----------->HVH21 --------->ZAT18  <---------ANAC58         --------->ANAC58   --------->ARR14(2)<---------SPL7 <---------ANAC46   ===========================HOX2a_HOX2a       <   <---------ARR14(2)--------->TOE2(2)  <------NtERF2  <------ZmHOX2a(2)              --------->ANAC58 ------->HSFB2a(2)   --------->TOE1(2)<------NtERF2   --------->ARR14(2) ------>ZmHOX2a(2)          - ------->HSFC1(1)   <---------HSFB2a(1)--------->LBD16<---------ARR14(2)<------ZmHOX2a(2)--------->MYB52(1) --------HSFB2a(2) <---------------AtSPL3 --------->GLK1(1) --------->ZAT2 ------>ZmHOX2a(1)------->GAMYB -------LBD16      --------------->AtSPL3 <---------GLK1(1) <---------ZAT2 ==========================   tctggaatccgagtggttaagaacgtacgtgaagcttgccgcggagttcacggtcagatcggagcttgacatagatcctctcttcgatactcaaccgaat  7420800                         --------->ATERF1(1)                         <------NtERF2                       <---------ANAC46                       <---------ANAC58                       <---------ANAC58                       <---------RAP2.6(2)                                                    <------                      <------NtERF2                                                           -------                     <---------ATERF1(1)                                                     <-------               --------->MYB52(1)                                                            --------      --------->ALFIN1--------->ATERF1(1)                                                   *TSS =====================================HOX2a_HOX2a                                        <------NtERF2 <------ZmHOX2a(2)   --------->ABI4(2)                                                 <---------DEAR3(1) -------->AGP1----------->HVH21------>ZmHOX2a(1)  --------->YAB1                  <---------ZAT14 ---------ARR14(2)   ------>NtERF2               <---------YAB1                   <---------ZAT18 -------->ARR14(2)  <---------DEAR3(1)        <---------YAB1  --------->LBD16     --------->ZAT14 =======HOX2a_HOX2a --------->ALFIN1----------->HVH21<-----------GT1              --------->ZAT18   cagatcgagtggctctctaacggtggcgtcttcctcgactgacattttctgattataacttctccgagggttttgaaattgtagtgctctcggcgatatc  7420900                             --------->MYB52(2)                             --------->MYB55(2)                             <------MYB46(1)                          <-------GAMYB                        <------NtERF2                       ------>NtERF2                      <---------ALFIN1                                                              -                      --------->DEAR3(1)                                                            <                   --------->ANAC46                           <---------ARR14(2)                    =                   ------->GAMYB                            <---------YAB1                          <        <---------At4g35610 <---------AtMYB61              <---------TOE1(2)                        -        --------->At4g35610<---------MYB52(1)             <-----------GT1                       ----- ----------->HVH21--------->MYB46(3)                  --------->ARR11(3)                       <----- ---ARR11(3)  ------------>CBF                        <---------ARR11(3)                       ------ -->ARR11(3) --------->ANAC58<------MYB83           ------>MYB46(1)   <----------DOF2         <------ --GLK1(1)   --------->ANAC46<---------DEAR3(2)     ------>MYB83   ------>NtERF2            --------- ->GLK1(1)   --------->ANAC58<---------MYB46(3)  --------->MYB46(3)---------->ID1      <---------ZAT18   tctctgactgagctcaagcaatcgccaccgttggttccctaaaaacttcaaaccaacatcttacgattcggccttttactatgtttttgggctctcatat  7421000          <---------MYB52(1)       <---------TOE2(3) --------------->AGL15 <---------------AGL15 ---------------->AGL2                                                            --------->MYB52(2) -----------------AG                                                            <--------P ==================================================================================================== -----------------AGL1                               --------->AHL20(2)      <---------YAB1 ---------------->AGL1                               <---------AHL20(2)    <---------ICU4 ---->RAP2.6(3)                                 <---------ARR11(3)         --------->YAB1 ----ARR14(2)                                   --------->ARR11(3)        <---------ATHB12 --->ARR14(2)    <----------DOF2              ----------->GT1          <---------AHL20(2)         --- ---CCA1(2)  <---------At4g35610           <---------YAB1              --------->AHL20(2)      <----- >YAB1 <---------YAB1                   <---------YAB1                --------->AHL20(2)    <--------   cggcccaatatggttagctctttttttttttttcgtcgaagtattatgaagataataaatcatctaatgcaaataaatcatggttagtggaacttaacta  7421100                                                                  <---------ANAC58              --------->ANAC58                                    <---------ANAC58          --------->YAB1                                   <-----------TBP         <---------ATHB12                      <-----------GT1<------------CBF   --------->DAG2 ==========MADS_MADS  <------------CBF        --------->AHL20(2) <---------MYB46(3)  <---------DAG2 ------>YAB1  --------->ANAC58          --------->ANAC46 <----------DOF2        ---------->DOF2 ----------AGL15   ------------>CBF   --------->ZAT6    <---------ICU4       --------->YAB1 ---GT1--------->WOX13(1)            --------->ZAT14 --------->YAB1 <---------MYB46(3)<----------DOF2   tattaagtccaatcacaaggtatcaattggtcatttcattacactaaatttactataatctttatattggttgttttaatcaaaaagccttttgtcatat  7421200                               --------->LBD16                             <---------LBD16                          --------->WRKY12                          ----------->HVH21       <----------DOF2                               <----                        --------->ZAT2            <---------DAG2                          <---------AHL20(1)                        <---------ZAT2   ---------->DOF2                   --------->WRKY12<---------AHL20(2)                        --------->At4g35610--------->ANAC58                --------->WRKY38(1) <-----                        <---------At4g35610--------->ANAC58              <----------DOF2 <---------CCA1(2)                     <------ZmHOX2a(1) --------->ANAC58                 --------------------->WRI1      *TSS     ----------->RAV1(2)     --------->ANAC58           <-----------GT1 <---------CCA1(2)   acagagagagaagagaaacctgaggaagctgaccggagaagacgaaagcaaacttttttctgtgagttttacttcctttgactcatctctcatatattta  7421300                                                                          --------->CCA1(2)                                                        <----------DOF2   <------ZmHOX2a(2)                             --------->At4g35610       ------>ZmHOX2a(2) <---------ARR14(2)       <-----------GT1  ------>ZmHOX2a(1)            <---------ARR11(3)  <---------ARR11(3) <----------DOF2    <---------ARR14(2)               --------->ARR11(3)  --------->ARR11(3) <---------DAG2     --------->ARR14(2)      ---------->DOF2--------->YAB1--------->ARR14(2) -----At5g28300    <---------GLK1(2)       ------>ZmHOX2a(1)  --------->KAN4(2)   --------->ICU4 ------GT1       --------->LBD16           ===================HOX2a_HOX2a--------->AGP1          <---   ccgctttattttcttcatcccgattcctctctgcttcattctctcctaaagtttcgatctttaatattcccctaagatccagtactaattttgttgacaa  7421400  Previous    Next  AGI:  At1g21190.1    Description:  small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative. similar to small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative [Arabidopsis thaliana] (TAIR:AT1G76860.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ80158.1); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649); contains InterPro domain Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920) Range:  from: 7419667    to: 7420892    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g21200.1    Description:  transcription factor. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G76870.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43641.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65038.1); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005) Range:  from: 7421206    to: 7423132    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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