Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   --------->ANAC46                                               <---------ALFIN1                                           <-----------HVH21                                        <---------MYB52(1)                  ------>MYB46(1) ---------TOE2(3)                      <-----------HVH21                  --------->AtMYB61 -------DOF2               ---------->DOF2--------->WOX13(1)              --------->DEAR3(1)    ----- ----At4g35610     <---------SPL7      <-----------TGA1                <---------ALFIN1    --------->DAG2 --->At4g35610   <-------TEIL         --------->ETT(2)       <----------DOF2------>MYB83 --------->CCA1(2)   tttaggtttctcacatagcttcgtaccaatagagccatcgtcgtcagtcacacagcatctattctttgattcaacacctcccatggatgagataaggggg  7412400                 --------->ANAC58                 --------->ANAC46                 --------->ANAC58             <---------MYB55(2)            --------->ANAC58         ----------------->AGL3            --------->ANAC46         ------>ZmHOX2a(2)            --------->ANAC58         <-------TEIL           ------>NtERF2            <------ZmHOX2a(2)          --------->AtMYB61        <---------ARR14(2)          <---------ALFIN1      --------->TOE1(1)         --------->MYB46(3)     --------->TOE2(1)       --------->ANAC46        --------->LBD16                                  --------->LBD16    <---------ALFIN1           ------>ZmHOX2a(1)                  <---------ANAC58    --------->AtMYB61          =============HOX2a_HOX2a           <---------ANAC58  <-----------HVH21       <---------GLK1(1)                 ------->TEIL       --------->ANAC46 --------->AtMYB61 <---------ALFIN1--------->ARR14(2)    <---------YAB1       ------->GAMYB ---->ATERF1(1)<---------ALFIN1<---------LBD16     --------->AHL20(2)      <-----------GT1   agaccatcacccccaccccacgcactcgaattcctcggatccattgatagaaatcaaatatgaatatagcctgtgattaacccccaataccgaaaacaaa  7412500                   --------->TOE2(3)                  <---------ICU4                  <--------HAHB4                  --------->YAB1                 <---------ATHB12                                                                <---                 <------ZmHOX2a(2)          --------->WOX13(1)                             <---------DAG2           <---------ARR14(2)              <---------AHL20(2)                              <---------           --------->ARR14(2)              --------->AHL20(2)                             <---------DAG2          --------->GLK1(1)          ----------->RAV1(1)                                  -----------          <---------GLK1(1)<---------HSFB2a(2)                                            <----------       --------->MYB59     --------->HSFB2a(2)                                           ------------       <---------TOE2(3)--------->ZAT6  --------->YAB1                                 <-----------GT1   acatacaataaggtatccgatcattaactctagaaacaacaacaataaatcaacaaaatcaactacaatgttcagagcgatagagaagattacctttttc  7412600                                                                                        <------ZmHOX2a(1)                                                                                       --------->LBD16                                                                           <------ZmHOX2a(2)                                                                           ====================HOX2a_HOX2a                                                                          <---------ARR11(3)    ----------->GT1                           --------->ANAC46            <---------ARR14(2) ------------AGL15                            --------->ANAC55(2)         --------->ARR11(3) -DOF2   <-----------GT1                     <---------LBD16            ----------->ARR10 ---->AGL15                                 --------->MYB52(1)     --------->LBD16   <-----------RAV1(2) -----AGL15                       <---------LBD16                <---------LBD16  <----------DOF2 ----->AGL1         --------->MYB59       <---------WOX13(1)   <-----------GT1 --------->ARR11(3)   <   tgtaatgggtttaacttcatattaggcaaaaacaaactcggaagattgacggaacaaaaaacaattcaccggagaagatcaggtctttcaggagaagagt  7412700                            <---------AHL20(2)                           <---------ARR11(3)                <-------GAMYB                                        ---------->ID1 --------->AHL20(2)               <---------ANAC58                                     <-----------HVH21               <---------ANAC58        <----------DOF2             <-----------RAV1(1)           <----------DOF2 <---------AHL20(1)         --------->ANAC58     <---------ANAC46       --------->GLK1(1)   --------->AHL20(1)         --------->ANAC58    <------NtERF2  --------->At4g35610      --------->ARR11(3)         --------->ANAC46  <---------ANAC46  ----------->GT1         --------->CCA1(2)   <---------GLK1(1)    --------->MYB52(2)  <---------At4g35610    <---------ARR11(3)<---------TOE2(3)  <---------TOE2(3)     <---------AHL20(2) -----------RAV1(2)      --------->ARR11(3)<---------TOE1(3)  <---------TOE1(3)  --------->YAB1    >>   aagcaggtgatttcttttcgttgcagagatatatttgagagctttagggtttctgaacgcaattcaggtttgtcgcgtcgtatttataaatttcgatcga  7412800                                               --------->MYB52(1)                                        --------->YAB1                                  ----------->GT1                                 <---------TOE2(3)     <---------ANAC58                             <----------DOF2  *TSS     <---------ANAC46                          <-----------GT1  --------->YAB1   <---------ANAC46                     <---                <------ZmHOX2a(1)<---------TOE1(3)     <---------ANAC58              <---------ICU4  ---------->DOF2   --------->GLK1(2) --------->AHL20(2)<----------DOF2            --------->TOE2(3) >>>>>>>TBF1   ----------->GT1   --------->MYB59 --------->MYB46(3)              <---------AHL20(2)--   agaagaaagcttgagtaaggagaatttataacttttaggttaaaataatcaacgactgcgttttgtgagtctccagtttttatttcattaatacatggaa  7412900                                                                                  <------------------                                                                              =======================                                                                              ------>ZmHOX2a(2)                                                                             ========================                                                                             <---------GLK1(1)                                                                             <------ZmHOX2a(2)                                                                            --------->ARR11(3)                                                                            <-----------ARR10                                                                            --------->ARR14(2)                                                                            <---------ARR11(3)                                                                            <---------ARR14(2)                                                                            <---------AGP1                                                                           <---------CCA1(2)                                                                      --------->ZAT14     --------->DAG2                                                   <---------ZAT14    ---------->DOF2                     --------->DAG2                --------->ZAT18               = ---------CBF                          ---------->DOF2            --------->ARR14(2)     --------->At4g35610 --------->GT1                  ---------->DOF2                --------->YAB1--------->GLK1(1)      <   attggaaaaagtcgaaaacagaagaaaaattcttcaaaggaaaaagtcacaaaactaaattcaaataagaactgcacagatctctgcgattagctcaagg  7413000              <------ZmHOX2a(2)             --------->ARR11(3)      ---------->DOF2  <----------ID1 ---WRI1     <---------ARR11(3)                   --------->ATHB12                       <------ZmHOX2a(1) ======HOX2a_HOX2a                               <---------YAB1                   <-------GAMYB ======HOX2a_HOX2a                             --------->YAB1                    <---------ANAC46 ====================HOX2a_HOX2a------------>CBF --------->ICU4                  <---------ANAC58 ------ZmHOX2a(1)     <-----------HVH21       --------->ICU4                     <---------ANAC58   gaggaagacaaagacgatcatctaagtcagagataacaatgtctagcagtgatgatttagatgaagatgagctacttcaaatggcgttgaaggagcaatc  7413100                                                                                                   --                                                                                               <-----                                                                                               ------                                                                                              <------                                                                                              -------                                                                                              <------NtERF2                                                                                              <------                                                                                              -------                                                                                             <-------                                                                                           <------NtERF2                     <---------HSFC1(2)                                                    --------->ATERF1(1)                     --------->HSFB2a(1)                                                   <---------At4g35610                     --------->HSFC1(2)                                                   <---------ORA47(2)                     <---------HSFB2a(1)                                                  ------>NtERF2                  --------->At4g35610       --------->ANAC58            <---------LBD16   <---------ATERF1(1)                --------->YAB1             --------->SPL7             --------->MYB46(3)  <---------RAP2.3(1)              ------>MYB46(1)             <---------MYB52(1)        --------->RAP2.6(2)  <---------RAP2.3(2)              --------->MYB52(1)         --------->LBD16          <---------ZAT2         <---------DEAR3(1)              ------>MYB83              --------->ANAC55(2)       --------->At4g35610    <---------ATERF1(2)            <---------MYB59             --------->ANAC46          <---------At4g35610    --------->ATERF1(2)           <---------ANAC55(2)         <---------LBD16         --------->ZAT14           <---------RAP2.6(2)           --------->ANAC55(2)  <---------MYB52(1)             <---------ZAT18          --------->ATERF1(1)         <-----------GT1       --------->LBD16   <-----------HVH21--------->ZAT2        --------->RAP2.6(3)     --------->ARR11(3)        <---------At4g35610             --------->ZAT18         <---------ATERF1(1)     <---------ARR11(3)    ------>ZmHOX2a(1)--------->ANAC58   <---------ZAT14   ---------->DOF2  <--   tcagagagatgttacctatcagaagcctccttccgctaattcccgtaagccagtcaccaatttagtgcagcagccacggagacaaaagagggcggcagct  7413200            <------MYB46(1)            <---------At4g35610            <------MYB83            --------->At4g35610           <---------DEAR3(1)      --------->MYB52(1) ---->ZmHOX2a(1) ----ARR14(2) --->ARR14(2)           <------NtERF2 ---ZAT2   <---------AtMYB61                                 <---------DEAR3(1) -->ZAT2   --------->ALFIN1    --------->ANAC58         ------->TEIL ---At4g35610          <-----------HVH21 <---------MYB46(3)  <---------AtMYB61    <---------ANAC58 -->At4g35610  <-------TEIL--------->ANAC58          <---------YAB1     <---------ANAC58 --ATERF1(1)<---------ZAT2 --------->ANAC58   <---------TOE2(3) --------->ALFIN1  <---------ANAC58 -------ALFIN1--------->ALFIN1 --------->ANAC58 <------ZmHOX2a(1)       <---------ANAC58   cctccgtctaagggaggtgcgaaggcgtcaaggaagccatcgatggatgaggatgatgaatcggaggtggaattgcttagcatttcgagcggggatgaag  7413300  Previous    Next  AGI:  At1g21160.1    Description:  translation initiation factor. similar to eukaryotic translation initiation factor 2 family protein / eIF-2 family protein [Arabidopsis thaliana] (TAIR:AT1G76810.1); similar to translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G76825.1); similar to translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G76720.1); similar to translation initiation factor [Pisum sativum] (GB:AAN32916.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65136.1); similar to hypothetical protein OsJ_018964 [Oryza sativa (japonica cultivar-group)] (GB:EAZ35481.1); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225) Range:  from: 7407944    to: 7412846    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g21170.1    Description:  similar to SEC5A (EXOCYST COMPLEX COMPONENT SEC5) [Arabidopsis thaliana] (TAIR:AT1G76850.1); similar to H0525E10.11 [Oryza sativa (indica cultivar-group)] (GB:CAH66927.1); similar to hypothetical protein OsI_015343 [Oryza sativa (indica cultivar-group)] (GB:EAY94110.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43643.1); contains domain EXOCYST COMPLEX COMPONENT SEC5 (PTHR13043) Range:  from: 7413039    to: 7419632    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version