Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   <---------WOX13(1)                                                               --------->ATHB12                                                              <---------YAB1                                                           <---------SPL7                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                          <---------ANAC58                                                          <---------ANAC46                                                     <---------ARR14(2)                                                     --------->ARR14(2)                                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)             ------->GAMYB               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            <---------ALFIN1            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          <---------ALFIN1             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <---------ALFIN1              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        --------->LBD16                <---------ZAT18    <---------ANAC58       --------->ANAC58               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       --------->ANAC55(1)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       --------->ANAC46             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       --------->ANAC58            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <xxxxxxxxxxxxxxxxsmallRNA(i)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <-----------GT1               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                           xxxx -->GLK1(2)-------->P            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          xxxxx -->ARR14(2)--------->MYB46(3)  <---------MYB46(3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         xxxxx ---ARR14(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        xxxxxxx >TEIL<---------LBD16          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                        <xxxxxxxxx --CCA1(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      --------->TOE2(3)   tgaaattacccgcaaccccctataactgtgttcttggttaggggacatataggtgtataggcgtatgattgcagaaatttgaattttgaaaaccttggta  7353100                    xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 --------->ANAC58                 --------->ANAC46                 --------->ANAC58         <---------HSFC1(1)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              <xxxxxxxxxxxxxxxxsmallRNA(i)--------->HSFB2a(2)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->GLK1(1)           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          ------->TEIL<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                       --------->GLK1(1)   <xxxxxxxxxxxxxxxxsmallRNA(s)           <---------HSFB2a(2)                     --------->At4g35610 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    --------->HSFC1(1)                      <---------GLK1(1) xxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------AHL20(2)                             <---------At4g35610 xxxxxxxxxxxxxxxxx>smallRNA(se3)  <---------AHL20(2)                            <------ZmHOX2a(1)  -- xxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->AHL20(2)             <---------AHL20(2)   xxxxxxxxxxxxxxx xxxxxxxxxxxxxxxx>smallRNA(s2) --------->ARR11(3)       <---------YAB1       <---------LBD16       -- xxxxxxxxxxxxxsmallRNA(le3)    <---------ARR11(3)    --------->AHL20(2)      <-----------RAV1(2)xxxxx   agagcaatgctgtatgtggacgcaaacgatatagattttaatttcgagaaatcgatttattatcgaattttttgaaatatcaggagctccaaaaaaaaac  7353200         --------->ATHB12       <----------DOF2     --------->At4g35610     ------>NtERF2    --------->RAP2.3(2)    --------->DEAR3(1)   --------->DEAR4(2)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   --------->RAP2.3(1)                     <---------MYB52(1)   --------->ORA47(2)            --------->HSFC1(2)   <------NtERF2                 <---------HSFC1(2)                          <---------ARR11(3)  <---------RAP2.3(1)         <------ZmHOX2a(1)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)    <---------ANAC58 --------->GLK1(2)  --------->ARR11(3) ---->MYB46(1) <---------ANAC58--------->ARR14(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxx>smallRNA(fl3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        --------->LBD16 ---->MYB83    <---------ANAC58<---------ARR14(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxx>smallRNA(s) --------->LBD16 <---------ANAC58<---------GLK1(2)  --------->GLK1(1)   ctagcgccgcttcatttgctggttttccgagaggaaacgtcttccgttctctacccatagattctgcaaactctccgaatatctatttcaaatctatatt  7353300                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                             <---------ATHB12                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                            --------->ANAC58                                            --------->ANAC58                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                           --------->WOX13(1)                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                        --------->ANAC58                                        --------->ANAC58                                       --------->MYB46(2)                                     --------->ARR14(2)                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                     <---------MYB52(1)            xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                         xxxxxxxxxxxxxxxx>smallRNA(i)           --------->ANAC46                         <-------TEIL<---------ARR14(2)         ----------->GT1 --------->CCA1(2)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   <-----------RAV1(2)  <---------LBD16                  <----------DOF2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       --------->AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->MYB59<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   gtttctcatacatatcgtttctttagattcaatctcgcagttaggcaatcaattccatcgggctacaggtaatttcacaaatatatgcggtttaagctat  7353400                                                                   <-------TEIL                                                               <---------TOE2(2)                                                               <---------TOE1(2)                                                               --------->MYB59                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                          <---------ARR11(3)                        <----------DOF2                   --------->ARR11(3)           --------->ANAC58                              --------->GLK1(1)        <---------WOX13(1)           --------->ANAC58                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           ------>ZmHOX2a(2)         <---------ATHB12 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <---------HSFB2a(2)        ------------>CBF  --------->MYB52(1)          <---------YAB1      --------->HSFB2a(2)      <-----------GT1<---------YAB1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   tcaacgttctcgatcgccatcaacttctttatttctccaatctatattccgattaactgaaatcttaggtacatactgtttctgatttataaacttctat  7353500                                                                                <-----------HVH21                                                                                --------->At5g28300                                                                               ------->GAMYB      ---                                                                            <---------ALFIN1      <--                                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                    =================================                                                                    ------>ZmHOX2a(2)     --------->ZAT18       ---------->DOF2                         --------->LBD16     <------ZmHOX2a(2)      <---------ZAT18   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <-----------GT1           xxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <---------ZAT18                      <----------DOF2             ==================================  --------->ZAT18            *TSS--------->MYB46(3)               --------->ARR14(2)      <---------ZAT14  <---------ZAT14          <xxxxxxxxxxxxxxxxsmallRNA(i)   --------->MYB59   --------->MYB52(1)   ----  --------->ZAT14       <---------At4g35610    <-----------HVH21  <---------ARR14(2)      --------->ZAT14   tttgtgcagaaaagggttcgacttgtagatgatgaacaactctttaccccgtcgattgtttaggtctggatccgagcccaacggtgagagagtgcagtcc  7353600                                                                                                    -                                                                                                   xx                                                                                                   xx                                                                                                  ---                                                                                                 <xxx                                                                                                 <xxx                                                                                                 <xxx                                                                                                 <xxx                                                                                             <xxxxxxx                                                                                            <xxxxxxxx                                                                                            <--------                                                                                           <xxxxxxxxx                                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                            --------->LBD16        --------->GLK1(1)      <xxxxxxxxxx                                   <-----------HVH21----------->GT1<---------GLK1(2)     xxxxxxxxxxxx           <----------DOF2    <---------DOF5.7(2)   --------->AtLEC2--------->GLK1(2)    <---------AHL20(2)   <---------ZAT18           ----------->HVH21     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxx   --------->ZAT14          --------->DOF5.7(2) <------ZmHOX2a(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   --------->ZAT18     --------->bZIP60(1) <---------ANAC46        <---------GLK1(1) --------->AHL20(2)   <---------ZAT14     <---------bZIP60(1)<-------TEIL          --------->HSFB2a(2)  --------->ATHB51 ------>ZAT14          <---------bZIP60(2)<---------LBD16       <---------HSFB2a(2)  --------->ATHB12 -------ZAT14       ----------->HVH21  --------->At4g35610      --------->LBD16      <---------AHL20(2) ===HOX2a_HOX2a   --------->At4g35610  <---------At4g35610     <---------LBD16      <---------AHL20(2) ===HOX2a_HOX2a   <---------At4g35610 --------->MYB52(2)      <---------LBD16       --------->ICU4<xx -->ZmHOX2a(1)  <---------WOX13(1)-------------->OsCBT   --------->KAN4(2)       <xxxxxxxxxxxxxxxxxxx   tacagtgaactgtctttgatagatgacatcgctaacgcgttagatgcggaggacatgaaaattctccgggaatctcagtttgggaaattatttgatttct  7353700                --------->HSFB2a(2)            <xxxxxxxxxxxxxxxxsmallRNA(s)            --------->ARR14(2)            <---------ARR14(2)        --------->LBD16        <------NtERF2        ------>NtERF2 --------->HSFC1(2)       --------->DEAR3(1)       <---------ANAC46      <------NtERF2   <---------HSFC1(2)      --------->ATERF1(1)      --------->DEAR4(2)     <---------RAP2.3(1)     <---------DEAR4(2)   <---------ABI4(2)  <---------At4g35610 --------->DOF2 <---------HSFB2a(2) xxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ------>ANAC46 <---------LBD16 xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               --------->ZAT2 xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                <---------At4g35610    <---------ARR11(3) xxxxxxxxxxxxxxxxsmallRNA(le3)                   <------NtERF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxsmallRNA(le3)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                     <x -GLK1(1)<---------ANAC46                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    --- xxxxxxxxxxxxxxsmallRNA(si3)            --------->MYB52(1)   <------ZmHOX2a(1)                  ----- xxxxxxxxxxxxxsmallRNA(si3)     <---------DAG2   --------->At4g35610  --------->ANAC58         <----- xxxxxxxxx>smallRNA(le3)        <----------DOF2  <---------ZAT2       --------->ANAC58         <----- xxxxxxxxxxx>smallRNA(fl3)   <-----------GT1    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         ------- xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  >>>>>>>>>SARD1     <------ xxxsmallRNA(se3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->MYB59 >>>>>>>>>CBP60g<---------LBD16   ccgaaagcgccgcgtattctgggaagcttattcactttttgctaacgaggcagcttgttgttaggaagaaacaagaaatttgggtaattttctctggatc  7353800                                                                   ---------->DOF2                                                                 <---------YAB1                                                             --------->TOE2(1)     <------MYB46(1)                                    ------->GAMYB                            ----     <------MYB83                                       --------->RAP2.6(2)                      ----     xxxxxxxxxxxxxxxx>smallRNA(i)                       --------->DEAR3(1)                       <---  <---------MYB52(1)                                   --------->DEAR3(2)                       ----- xxxxxxxxxxxxxxxsmallRNA(i)                            --------->MYB46(3)            --------->ANAC58 -------->RAV1(2)                                    --------->MYB52(1)              ----------->GT1 ->ZmHOX2a(2)                                      <---------MYB52(2)                --------->ANAC58 -ZmHOX2a(2)                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <---- ----GLK1(1)                                     ----------->RAV1(1)        ---------->DOF2    <----- -->ARR14(2)                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <------ZmHOX2a(1)   <----- ---ARR14(2)                     <-----------GT1<----------ID1  <---------TOE1(2)    xxxxxxxxxxxxxxxx   ccctgttcggttttccatttctgagtttcaaaatgttaccggtttgaactgcgacaaaccgcctcgtatgaaagagaggaaagggaaacgaaaattggcg  7353900                                                     --------->MYB111(2)                                                     <---------AtMYB61                                                     --------->MYB111(1)                                                     <---------MYB46(3)                                                     --------->MYB52(2)                                                     --------->MYB55(2)                                                    <--------P                                                   <---------ANAC58         <---------------AtSPL8                    <---------ANAC58      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        <-------GAMYB     --------->ICU4                                <---------ANAC46     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <------MYB83    --------->ANAC58                          <---------ANAC58                                      <    --------->ANAC58                  ------->TEIL<------MYB46(1)                            <------- ------->RAV1(2)                      --------->ARR14(2)                                 <---------TOE2(3) ----->ATERF1(1)                      <---------ARR14(2)                                 --------->ANAC58 ---NtERF2   --------->SPL7 <---------ZAT14   <---------ANAC58                           --------->ANAC58 ->NtERF2<---------------AtSPL3      <---------CCA1(2)<-------GAMYB                   <------ZmHOX2a(2) -----RAP2.3(1)             --------->ZAT18   <---------ANAC46                       --------->ARR11(3) ----RAP2.3(2)              --------->ZAT14  --------->ATHB12                        <---------ARR11(3) ----RAP2.6(2)         --------->WRKY12    <---------MYB52(1)                <---------MYB46(3)   --- xxxxxxx>smallRNA(s2)  ----------->HVH21 <-----------RAV1(1)                --------->ALFIN1 --------   cctggcaagtattggtacagcctatttgaccgcagtgatgtatctgttgagtgggttgttggcaggctgaagaagcgagtggttcaagatcaaggaattc  7354000  Previous    Next  AGI:  At1g21020.1    Description:  transposable element gene. similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G08740.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G26530.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G44890.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1) Range:  from: 7353529    to: 7357970    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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