Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    ------>NtERF2                               ------->MYC3                               <-------MYC3                               <---------LBD16                        --------->ZAT2                 ------->TEIL         --------->ALFIN1     --------->ANAC46 --------->LBD16    ----------->RAV1(1) <---------ZAT2         ----------->HVH21 -----At4g35610        ------>MYB46(1)        --------->LBD16 ---->At4g35610        ------>MYB83          --------->At4g35610                                  <-- ---->ZAT2<---------MYB46(3)<---------ALFIN1 <---------LBD16                <----------ID1        --- --At4g35610           --------->ANAC58      ----------->RAV1(2)     --------->YAB1     <---------At4g35610 ->At4g35610           --------->ANAC58    --------->ZAT18     --------->YAB1   ---------->DOF2------   cttcagccacagtggttccatcaccaagctccacgcggacagtagtcccctgaaacgaatttcaagcagaataagaaaatgacaaagttcaactgattaa  7301000                                                                           --------->At4g35610                                                                         ================HOX2a_HOX2a                                                                         ------>ZmHOX2a(2)                                                                        =================HOX2a_HOX2a                                                                        <------ZmHOX2a(2)                                                                        --------->CCA1(2)                                              <---------HSFB2a(2)      --------->ARR11(3)                                              --------->LBD16          <-----------ARR10                                              --------->HSFB2a(2)      --------->AGP1                             ----------->GT1------>ZmHOX2a(2)          <---------ARR11(3)                         <------ZmHOX2a(1) --------->CCA1(2)           <---------AGP1                         =========================HOX2a_HOX2a          --------->ARR14(2)                         ==========================HOX2a_HOX2a         <---------ARR14(2)                       <---------TOE2(3)   <------ZmHOX2a(2)          <---------CCA1(2)                --------->YAB1            --------->ARR14(2)         ----------->ARR10 -------At4g35610    --------->TOE1(2)    <---------ARR14(2)     <---------GLK1(1)         <-------TEIL ------>At4g35610 ------->TEIL            --------->AGP1     <---------HSFB2a(2)      ---------->DOF2 ---->DOF2     <---------ATHB12    --------->AHL20(2)        --------->HSFB2a(2)  <------ZmHOX2a(1)   agctgaagagactgccaatgaaacttaggaatcgaaataaaacagatccgagaacaatacaatctagaaatcagatctgcttaaggagcaaagttcatcg  7301100                                                                                           <<<<<<<<<<                                              --------->YAB1                              <------ZmHOX2a(1)                                             <---------YAB1                               ===========                                           --------->YAB1                            <--------ATHB1                                          ----------->GT1                            --------->ATHB12                                          <---------YAB1                             --------->YAB1                                        --------->YAB1                              <---------ATHB12     --------->CCA1(2)          <---------GLK1(1)                                   <---------YAB1  <---------YAB1                --------->GLK1(1)               --------------->AtSPL8    ===========  <---------TOE2(3)         <---------HSFB2a(2)         --------->YAB1     --------->AHL20(2)   aattaagataaacaaaaacttggaatagttgcagaaatccaagaatgataatattgaataagaaactaagtactcaaataaatccaatgataggaacaat  7301200          <------ZmHOX2a(2)         --------->ARR11(3)         <---------AGP1                              <---------TOE1(3)         <---------ARR14(2)                      --------->At4g35610         <---------ARR11(3)                      <---------At4g35610         --------->AGP1                          <---------ZAT2                    --------->ALFIN1 <<<<<<<LFY------>ZmHOX2a(2)                  =============================HOX2a_HOX2a            --- =================HOX2a_HOX2a       <----------ARF1 <-----------RAV1(2)     --------->At4g35610 <---- ================HOX2a_HOX2a----------->HVH21 <------ZmHOX2a(1)     <------ZmHOX2a(2)        <-------   ggaaggaagtagatctatgaagtagaagaagggacctggagacaaggaggaagctcaggtttgtactgagatcgaagttgctgaagaggggagagttctc  7301300                                                                          <---------ANAC46                                                                          <---------ANAC58                                                                          <---------ANAC58                                                                        <---------ANAC58                                                                        <---------ANAC46                                                                        <---------ANAC58                                                                       --------->ALFIN1                                                                       <---------AtMYB61                                                                   <------MYB46(1)                                                                   <------MYB83                                                                  --------->MYB111(1)                                                                  <---------MYB46(3)                                                                  <---------DEAR3(1)         --------->GLK1(1)                                        <---------AtMYB61       --------->LBD16                                            --------->MYB111(2)   --------->GLK1(2)         <------MYB83                         --------->MYB46(2)  <---------ARR14(2)         <------MYB46(1)                     <--------P  --------->ARR14(2)        --------->MYB59                      <---------MYB55(1)           <------  --------->GLK1(1)        <---------MYB55(1)           >>>>>>>>>TBF1<---------ANAC46         -------  <---------GLK1(1)     <---------ANAC58             >>>>>>>>>TBF1--------->MYB55(2)          <------ ------>LBD16           <---------ANAC46          >>>>>>>>>TBF1--------->MYB55(2)             <------ -----LBD16             <---------ANAC58       >>>>>>>>>TBF1   <---------MYB46(3)            <------- --ZAT14 <---------GLK1(1)<---------MYB52(1)>>>>>>>>>TBF1     --------->ALFIN1          --------->ALFIN1   tggggattccgaaatctgaatccatggcgttaggttttatgtagaagaagaagaagaagaagaagtggttggtgtggtgtgagacttcgagtgtgacttt  7301400                                                                                 ------>MYB83                                                                               ------->GAMYB                                                                               --------->AtMYB61                                                                               <---------MYB59                                                                             -------->P                                                                             ------>MYB46(1)                                                                             ------>MYB83                                                                            --------->MYB55(1)                                                                           <---------MYB111(2)                                                                           --------->AtMYB61                                                                   <---------KAN4(1)       ----------->GT1                                             --------->KAN4(1)        <--------     <---------ANAC58                                             ---------->TaMYB80       <---------MYB52(1)     <---------ANAC58                                             <---------KAN4(2)<---------ALFIN1    *TSS                             --------->ALFIN1        <------ZmHOX2a(1)--------->MYB46(3) ----DOF2                           <------ZmHOX2a(1)     <------ZmHOX2a(1)<---------MYB46(2) -------->AGL15           --------->AHL20(1)            --------->ALFIN1   <---------MYB55(2) ---DAG2                  --------->ARR11(3)           <------ZmHOX2a(1)   <---------MYB111(1) ---------AGL15           <---------AHL20(1)     ---------->DOF2<------ZmHOX2a(1)------>MYB46(1)   <- ----------AGL3          --------->AHL20(2)   >>>>>>>>>TBF1--------->ALFIN1--------->MYB46(3)  <-----   ttttggttcttgttaataaacttcaaaatatatagtgaggagggagaagaagaaagaggaggaggaggaatatactaccaaccaaacacctccgtttctt  7301500                                                                                  <---------YAB1                                                                              <---------ANAC58                                                                              <-------GAMYB                                                                              <---------ANAC58                                                                            <---------TOE2(3)                                                 <-----------GT1        --------->ARR11(3)    <---------ANAC46  <---------DAG2----------->RAV1(1)                 <---------AHL20(1) -ARR11(1)  --------->TOE2(3)       --------->MYB52(1)                  --------->AHL20(1) ---------DOF2        <----------DOF2  ------->GAMYB         <---------ANAC46<---------MYB46(3) -----DOF2 ----------->GT1         --------->ANAC46         --------->ATHB12<---------YAB1   tctttttggtgtatcgttatatgacttttttatgaacacaacagactgttttgactacatattgtttggacaaatattttggttgtgattttgcaagttt  7301600                     <---------YAB1                                                                 -                ----------->GT1                             <---------ANAC58                   ------             <---------ANAC58                             <-----------GT1              <------ZmHOX2a(1)             <---------ANAC58             <---------AHL20(2)<---------ANAC58          ----------->GT1         --------->DOF5.7(2)           ------->TEIL <------MYB83                     <---------TOE2(3)       <---------ANAC55(2)        <---------AtLEC2  <------MYB46(1)                  <---------TOE1(3)   ctattgatcacgtttacttggttataatgcaagtttgaatgaattttttttgtttggtttttacttgcaatagtacattttagttttaaggaaaaactat  7301700                                                                                   <----------DOF2                                                          <---------AHL20(2)     --------->ZAT2                                                          --------->AHL20(2)     <---------At4g35610                     --------->ANAC46             <---------At4g35610            <---------ZAT2          --------->ANAC46         <-----------GT1--------->At4g35610  --------->ANAC58          --------->ANAC58    <---------At4g35610 <---------ZAT2       --------->ANAC46          --------->ANAC58  <-----------RAV1(2)   --------->ZAT2       --------->ANAC55(2) ---------->HVH21    --------->ANAC58            <-----------RAV1(1)   --------->ANAC58---------->DOF2 --->MYB52(1)        --------->ANAC58         --------->ZAT6      <----------DOF2--------->At4g35610   cggtgactcaataagccagtatcacacaactcagatgttacaaaatgaacactgctgcatttaaaattctttcaagtaatctcagctttcaaagtcacaa  7301800                                                                        ----------->GT1                                                                        <------ZmHOX2a(1)                                                                      <---------TOE2(2)          ----                                      <------MYB46(1)               --------->TOE1(2)     -----------                                      <------MYB83          --------->ANAC46             --------->ANAC58                          ------>ZmHOX2a(1)                 --------->ANAC58             --------->ANAC58              <<<<<<<<<<<<<<<<<LFY   --------->MYB59        --------->ANAC58             --------->ANAC46   actcaaattgtagttttgacattggctcctctgtcgagtttggtccaaacaaaactagaaacaagccatacataggattaaaaatcgatgcacgacataa  7301900  Previous    Next  AGI:  At1g20950.1    Description:  pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related. similar to pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative [Arabidopsis thaliana] (TAIR:AT1G76550.1); similar to Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha (PFP) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) (GB:Q41140); similar to pyrophosphate-dependent phosphofructokinase alpha subunit [Citrus sinensis x Poncirus trifoliata] (GB Range:  from: 7297228    to: 7301404    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g20960.1    Description:  EMB1507 (EMBRYO DEFECTIVE 1507); ATP-dependent helicase. similar to U5 small nuclear ribonucleoprotein helicase, putative [Arabidopsis thaliana] (TAIR:AT2G42270.1); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT5G61140.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ77552.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75158.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64800.1); contains InterPro domain Sec63 (InterPro:IPR004179); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain AAA+ ATPase, Range:  from: 7301737    to: 7310202    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version