Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    --------->TOE1(3)          ----------->GT1                                 ----------->ARR10          --------->YAB1                                 <------ZmHOX2a(1)          --------->ATHB12                         ---------->DOF2         --------->ICU4                     <---------AHL20(2)        <---------WOX13(1)                --------->AHL20(2) --------->GLK1(2) ------ZAT6      ----------->RAV1(2)      <---------AHL20(2)<---------GLK1(2)                  ------   agatagattgaatgattaaacctgaagatgaagaaacagaacatataaatttgaaaagaggagattctagggtttacaagggccttcgaagagaagaggg  7265000                                                                    ----------->TGA1                                  --------->TOE2(3)               --------->YAB1                                  --------------->AGL15  --------->ANAC58                                  <---------MYB59        --------->ANAC55(1)                       ------>NtERF2                     --------->ANAC55(2)                       ----------->RAV1(1)    --------->YAB1      <---------ICU4                      --------->PCF2         <------ZmHOX2a(2)   <---------YAB1                    <---------ATERF1(1)     <---------ARR11(3)  --------->ARR11(3)                   ------>ZmHOX2a(2)        --------->ARR11(3)  <---------ARR11(3)                   ===============================HOX2a_HOX2a  --------->YAB1                  <------ZmHOX2a(2)        <------ZmHOX2a(1)   <---------ICU4                  ================================HOX2a_HOX2a  -------->HAHB4                 <---------ARR14(2) ------>MYB83<---------YAB1--------->ICU4                 --------->ARR14(2) ------>MYB46(1) ----------->HVH21               ----------->ARR10 ----------------->AGL3  --------->ANAC58         ---------->DOF2  ---------->DOF2<---------TOE2(3)    <---------YAB1                        - ----->GT1--------->DAG2<------NtERF2  ---------->DOF2   <---------ANAC55(2)                      ---   tgagaaacagaaaaagtgagatcggccccaaagaaacctaataaaggatcatacttgacaagtaatgatcatgacgagagaaacaaaaaatagagagaga  7265100                       ----------->GT1                    ------------------------>ANAC81            --------->LBD16           <---------LBD16           --------->LBD16                            ----------->GT1                      ----------          <---------LBD16                            ----------->GT1           --------->ANAC58         <---------LBD16                          --------->DAG2               --------->ANAC58 ---------->GT1     --------->MYB52(1)           --------->DAG2                --------->ANAC46    -- -------->GT1--------->LBD16     ---------->DOF2---------->DOF2               <---------LBD16      <-   gagagaaaatttcccgggaaaaaaacagaaaaatgaaaagaagttaggggaaaaggggtttaaaactttgaaagatgtgccacggaagaagagaagactc  7265200           --------->ANAC58           --------->ANAC58          --------->ZAT18       <------MYB46(1)       <------MYB83      --------->MYB111(2)      --------->MYB46(2)      --------->MYB111(1)      --------->MYB59      <---------MYB46(3)     <--------P     <---------MYB55(1)    <---------MYB52(1)   --------->LBD16                                                                    <---------ANAC46  <---------HSFB2a(2)         <--------P                                              ----------->GT1  --------->HSFB2a(2)        <-------GAMYB                                  <---------ATHB12 <---------LBD16   <---------YAB1                              <----------ID1       --------->ALFIN1 ->ARR10  <-------TEIL<---------YAB1            ----------->RAV1(1)  --------->ARR14(2) ------->ARR14(2)  --------->ICU4               --------->MYB52(1)   <---------ARR14(2)           --- --------ARR14(2)--------->YAB1 --------->At4g35610------->GAMYB--------->CCA1(2)  --------->ALFIN1 <   ggttccggtaggtacacaagaatgattctagggttgctcaattggtagaacaacagaaaacgagagagacgaattcgaatcaagcgttggggaaaatggg  7265300                                                                                                   <-                                                                                                   --                                                                                                -----                                                                     --------->ARR14(2)       -------                           <----------DOF2                           <---------ARR14(2)      <-------TEIL                         <---------MYB46(3)                   --------->ANAC58          <-----------GT1                      <---------ANAC58                   --------->ZAT18      --------->HSFB2a(2)----     ---------->DOF2  <---------ANAC58                   <----------ID1       <---------TOE2(3) <---- ------>ALFIN1  --------->ARR11(3)         ----------->GT1    --------->ANAC58<---------HSFB2a(2)<--- ------ZmHOX2a(1)   <---------YAB1        <---------------------WRI1<------ZmHOX2a(1)  <-----------GT1   gaggagagaaagagggatgattttgagtggttttagggatttagatagaaaaatacaaggggacaaggaaggatttgtttatggaagttttaacattcat  7265400                                                  --------->YAB1                                                 <-------TEIL                                             <---------YAB1                                           <---------ICU4                                           --------->YAB1                                          --------->ICU4 --------YAB1                             <---------YAB1 ------->ICU4                        <---------ANAC58 ---->ICU4                           <---------ANAC46 -->YAB1                             <---------ANAC55(2)             ----------->GT1 ----->YAB1         ----------->TGA1 <---------ANAC58--------->AHL20(2)        ---------->DOF2 -----YAB1     <------MYB46(1)       --------->ANAC55(2)      --------->HSFB2a(2)                  -- ------ICU4    <------MYB83*TSS      <---------ANAC55(1)      <---------HSFB2a(2)                ----   gatgatggtgaagaagttggtgatgacgaagacgatgatgcgtgattatgattcataaattcttcgagagagagagaaaacaaaaggagttgttcttcac  7265500                                   <XXXXXXXXXXXXXXXXXXXXMIR397A                                   <---------TOE2(3)                              --------->ATHB12                             --------->ICU4                                                  <-------          --------->ANAC58   <---------YAB1                                                <---------          --------->ANAC58 --------->YAB1                                             <------MYB46(1)      <---------ALFIN1     -------->HAHB4    <---------AHL20(2)                       <------MYB83   <---------TCP15(1)      <---------ICU4    --------->AHL20(2)                      --------->MYB59   <---------TCP20        --------->ICU4     <---------AHL20(1)             --------->ARR14(2)      -   --------->PCF2         <---------ATHB51   --------->AHL20(1)             --------->GLK1(2)--------  <---------PCF2        <---------ICU4  --------->At5g28300                 <---------ARR11(1)     <- ------->LBD16 <---------ATHB12   <-----------GT1--------->YAB1             <---------ARR14(2)  <---- ------->RAV1(2)     ----------->GT1   ----------->GT1         <---------TOE2(3)------>ZmHOX2a(1)----   cctgggtcccactcgaaatcatctagtaattatgattaacgctgtaattaattagaacacaaattgtggttttgtccgaatcctagtttggttcttttat  7265600         <--------P        <---------ANAC46        <---------ANAC58        <-------GAMYB        <---------ANAC58                        --------->At5g28300       <---------MYB46(3)                      ----------->GT1       <------MYB46(1)                       <---------At5g28300       <------MYB83                         <-----------GT1       --------->MYB55(2)                   --------->MYB52(1)       --------->MYB52(2)            <------NtERF2                                          <--------     <---------MYB52(1)             ------>NtERF2                                         <---------AHL20(2) --AHL20(2)                         --------->LBD16                                      <---------AHL20(2) -DOF2<---------AtMYB61            --------->LBD16                                       --------->AHL20(2) -------->YAB1                     <---------LBD16                                    <---------AHL20(2) ->AHL20(2)            <---------LBD16      <---------DOF5.7(2)                       --------->AHL20(2) --------YAB1     <---------YAB1   <---------ANAC46           --------->AHL20(2)     --------->AHL20(2) -----YAB1 <------MYB46(1)        <---------LBD16<---------MYB52(1)              <-------TEIL-------- ----->YAB1<------MYB83<---------At4g35610  ------------>MYB.PH3(1)         --------->AHL20(2)<------   tatcacagttggttggagttattttagcggattactgccgggaaattaacggttatttcatacattatatgaacaaaaaaaaattcatttatttattaaa  7265700                        --------->AHL20(2)                    <---------AHL20(2)                    --------->AHL20(2)                                                             <-                 <----------DOF2                             <----------DOF2                 <-------GAMYB                <---------ANAC58                         --------->ZAT14                    <--------      <-----------GT1   <---------AHL20(2)               <---------ZAT18                    ---------      <---------ARR14(2)--------->AHL20(1)               <---------ZAT14                    --------- -YAB1--------->ARR14(2)<---------AHL20(1)     --------->ARR11(3)                           --------- ->AHL20(2)     <---------ANAC58               <---------ARR11(3) <---------ZAT6            <-------- ---AHL20(2)<----------DOF2 <-----------GT1---------->DOF2 ------->TEIL                   <---------ANAC46   aatatgtgtaacctctttgcttttaattaattactccctattcccaaaagataatacggtgtactttagagttattcatcttgtggaatgttgtttgttg  7265800         --------->MYB52(1)<-----------GT1                              --------->TGA1a --------WOX13(1)        <---------MYB59                                --------->O2 -MYB46(3)              <---------ANAC55(2)                            --------->LBD16 >MYB52(2)              --------->ANAC55(2)                           --------->ANAC46 >MYB111(2)          <---------MYB52(1)                              <---------LBD16 >MYB55(2)    --------->ARR14(2)       <------ZmHOX2a(2)       <------ZmHOX2a(1)            --------- ---RAV1(1)   <---------ARR14(2)       ===============================HOX2a_HOX2a         <---------ATHB12   gattgaaattcaaacggataagcgttacttaactatatacgatcaaaccatacaagttcagaataggacttcccgcgtctgaaaaacatgaaatcaatct  7265900  Previous    Next  AGI:  At1g20880.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G76460.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66287.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 7262032    to: 7265427    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g20890.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G76480.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43758.1) Range:  from: 7265812    to: 7267312    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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