Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     --------->WRKY12                                                   ----------->HVH21                                          --------->ATHB12                      --------->ATHB12    <---------ICU4                              <---------AHL20(2)            <------MYB83                  -------->HAHB4                              --------->AHL20(2)       <---------TOE2(3)                 <---------ATHB12                          <---------ICU4       <---------TOE1(3)                 --------->ICU4                           --------->ICU4    <       <---------AtMYB61           --------->TOE2(3)                            --------->ANAC46  --- <---------YAB1   <---------AHL20(2)------>ZmHOX2a(1)                        <---------ZAT18      <-- -------YAB1<------MYB46(1)  ------>NtERF2--------->YAB1                 --------->ARR14(2)    <xxxxx ----DOF2 <--------P <---------YAB1--------->TOE1(3)         <xxxxxxxxxxxxxxxxsmallRNA(s)    <xxxxxxx   cttattgttgaggttggcattttatcattgaggccttccttaaatgattacctctgaccgagacagaggtttctagttctgcacataattaaacaaacca  7251800                        ---------->DOF2                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     --------->YAB1                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            <---------ZAT2            <------NtERF2           <---------ATERF1(1)           ------>NtERF2xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           <---------DEAR3(2)          --------->RAP2.6(2)          <---------RAP2.6(2)          ----------->GT1          <---------ATERF1(2)       <---------ZAT2          <---------DEAR3(1)        <---------At4g35610          --------->ATERF1(2)       --------->ZAT2         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->AHL20(2)         --------->ATERF1(1)<------ZmHOX2a(1)  --------->AHL20(1)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------AHL20(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->AHL20(2)   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ----------->GT1 --------->ANAC46 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---------At5g28300<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------>ARR14(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) -------ARR14(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxsmallRNA(fl3)    --------->At4g35610                          --------->YAB1 xxxxxxxxxxxxxxxxsmallRNA(le3)     <---------AGP1                      ----------->GT1   ------------   tataccgcagggccggctcagaataataaaggacctagagctggaaaaaaaaattagttctcatttttgtgttttgttatatatcaaaatttttggaccc  7251900                                                                  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                 <---------ALFIN1                                                                <---------At4g35610                                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                            ------>ZmHOX2a(1)                                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                       <xxxxxxxxxxxxxxxxsmallRNA(i)                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                       --------->At4g35610                                                       <---------At4g35610                                                       <---------ZAT2                                                       --------->ZAT2                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                   <xxxxxxxxxxxxxxxxsmallRNA(i)                                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                                                 <xxxxxxxxxxxxxxxxsmallRNA(s)                                                xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                               <xxxxxxxxxxxxxxxxsmallRNA(i)                                               <xxxxxxxxxxxxxxxxsmallRNA(s)                                              <xxxxxxxxxxxxxxxxsmallRNA(i)                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                              <xxxxxxxxxxxxxxxxsmallRNA(s)                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             <xxxxxxxxxxxxxxxxsmallRNA(i)                                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                             <xxxxxxxxxxxxxxxxsmallRNA(s)                                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                            <xxxxxxxxxxxxxxxxsmallRNA(i)                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                           xxxxxxxxxxxxxxxx>smallRNA(i)                                           xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                          xxxxxxxxxxxxxxxx>smallRNA(i)                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                        xxxxxxxxxxxxxxxx>smallRNA(i)------->MYC2                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                       <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                       <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                       xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <---------RAP2.6(2)                                      xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       --------->DEAR3(1)                                     <---------ANAC46<xxxxxxxxxxxxxxxxsmallRNA(i)                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       --------->ATERF1(2)                                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         <---------ATERF1(2)                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       --------->RAP2.6(2)                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->RAP2.6(3)                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     ---------->DOF2                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <-------MYC3                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ------->MYC3       <---------ARR14(2)                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<-------MYC2         --------->ARR14(2)    --------->YAB1             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<-------MYC4 <------NtERF2   <---------YAB1        ---------->DOF2----------->ARR10<xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->YAB1<----------DOF2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<-------MYC3------>NtERF2 --->AtSPL8 <-----------GT1    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)------->MYC3<---------RAP2.6(3)   taactataatagatttacttttaaaaaaaaagaaattttgggtagaccctgtgcctcagctcctccagcacatgtgtaaagccggcctgcatatacgatt  7252000                                                                                   --------->ZAT14                                                                         <-------TEIL --------->ZAT6                                                                       <---------GLK1(2)                                                       <----------DOF2 --------->ARR14(2)   ---------                                        --------->TOE1(3)              <---------ARR14(2)   ---------                           <----------ID1  ---------->DOF2     --------->ANAC58   <---------DAG2               <-----------GT1         --------->At4g35610     --------->ANAC58   <----------DOF2----          ---------->DOF2---------->DOF2--------->TOE2(3)  --------->ANAC46 --------->ZAT6---------->DOF2   agtacttggagtcaaagtaacctcatggaaagacaaaactaagcttaaagacacagactttacacaagttacagattcagactactttactctaaagcaa  7252100                                                                  ----------->HVH21                                                                <---------ANAC55(2)                                                                --------->ANAC55(2)                                                               *TSS                --------------->AtSPL3 >ANAC58                              <-----------ARR10 ------>ZmHOX2a(1)         --------->MYB52(1) >ANAC58                      <---------AHL20(2)    <---------ARR14(2)          <---------MYB52(2) ------>DOF2                ----------->TBP         --------->ARR14(2) ---------->DOF2              <   aaagagcgacctctatcgagtctccagcctatataaacaggctcttctcttccatttcctcttatcaagtgacaaaagaaaaacaaacgtactcaaatgg  7252200                                               <---------At4g35610                                            --------->At4g35610                                            <---------At4g35610                                            --------->LBD16                                      ----                     ------>ZmHOX2a(1)     --------->ANAC46                                      <---                 --------->ARR14(2)     <---------ARR14(2)                                    <------                 <---------ARR14(2)     --------->ARR14(2)                    <---------TOE1(2)<----- ----------DOF2  --------->GLK1(2)   <---------DAG2             <----------DOF2            --------->ATHB12   ctctttcttcaccttcaagaatcctctgttttgctcttgccttatccgctgcttctctctccctctctttcgcttcttcccacgattactccatcgttgg  7252300           <---------ARR14(2)          <------ZmHOX2a(1)                              ------>ZmHOX2a(2)       --------->LBD16                                 --------->ARR14(2)      --------->LBD16                                  <---------ARR11(3)    <---------LBD16                                    <---------ARR14(2) ----->ARR14(2)                                        <---------AGP1                           <---- ------ARR14(2)                                       <---------CCA1(2)                         ----- ---TOE1(2)--------->ARR14(2)                 --------->HSFB2a(2)             <---------YAB1    ----- ----MYB46(3)    <---------GLK1(2)--------------------->WRI1          ---------->DOF2           <----   atactcccccgaggatttggaatctcatgacaaactcatagaactcttcgaaaactggatctcaaattttgagaaagcttatgaaaccgttgaagagaag  7252400       <-------TEIL                                                                           <------       <---------------------WRI1                              --------->ANAC58               -------   <---------TOE2(3)                                           --------->ANAC58               <------   <---------TOE2(2)                                          --------->DAG2                ---------   <---------TOE1(2)                                         ---------->DOF2               <---------ANAC58 -----HSFC1(2)               ---------->DOF2              <----------ID1                   <---------ANAC46 ---->HSFC1(2)           --------->GLK1(2)            ---------->DOF2           <---------WRKY38(1) ---->HSFB2a(1)      --------->YAB1                 --------->ANAC58    <---------ANAC58   <---------ANAC58 -----HSFB2a(1)    <---------TOE2(3)                --------->ANAC58    <---------ANAC58  <---------LBD16   tttcttaggttcgaagttttcaaggataatctaaagcacatcgatgagactaacaagaaagggaaaagctactggctcgggctcaacgagtttgcggatt  7252500                                                                    <------ZmHOX2a(2)                                                                   <---------ARR14(2)         <------                                                                   --------->ARR14(2)         =======                                                                   <-----------ARR10          =======                                                                   <---------ARR11(3)         <------                                                                   --------->ARR11(3)         -------                                                                   --------->ARR14(3)         =======          --------->GLK1(1)                                        <---------ARR14(3)<----------DOF2    --------->ICU4                                                 <---------AGP1--------->ZAT18 -----ARR10                                                    ====================================== -->ARR14(2)                                                   ---------->DOF2   <---------ZAT18 ---ARR14(2)            ------->TEIL                 --------->ANAC58 <---------SPL7 ================ >LBD16 <------ZmHOX2a(1)                            --------->ANAC58------>ZmHOX2a(2)        <------   tgagccatgaggagttcaagaaaatgtatttagggctcaagactgatatagtgagacgcgatgaagaaagatcttacgcagagttcgcttacagggacgt  7252600                                            <---------ANAC46                                            <---------ANAC58                                            <---------ANAC58                   <---------WRKY18(1)   --------->ALFIN1 <---------At4g35610                     <---------DEAR3(1) <---------ZAT2   --------->WRKY12     <-----------RAV1(1) ---bZIP60(2)     --------->WRKY38(1)  --------->ALFIN1 =======================MYC_MYB      <---------ZAT2 =====================================bZIP_DOF ---TGA1a       <---------At4g35610  --------->At4g35610 -->TGA1a------>ZmHOX2a(1) ---------->DOF2 <---------LBD16                                      ----- =====================================bZIP_DOF                                   --------->ARR11(3) ===bZIP_DOF    --------->At4g35610  --------->ZAT2                   ----------->GT1           <---- ===bZIP_DOF    <-------GAMYB  ---------->DOF2<------NtERF2     <----------DOF2  <---------ARR14(2) ---ANAC46     <---------MYB46(3)    <---------At4g35610      <---------ZAT18   <---------CCA1(2)  <-   cgaagctgttcctaagtctgttgactggagaaagaaaggagctgtggcggaagttaagaaccagggctcttgtggtaatatcaaatcttggtctctgatc  7252700  Previous    Next  AGI:  At1g20850.1    Description:  XCP2 (XYLEM CYSTEINE PEPTIDASE 2); cysteine-type peptidase/ peptidase. Identical to Xylem cysteine proteinase 2 precursor (XCP2) [Arabidopsis Thaliana] (GB:Q9LM66;GB:Q9SYQ2); similar to XCP1 (XYLEM CYSTEINE PEPTIDASE 1), cysteine-type peptidase [Arabidopsis thaliana] (TAIR:AT4G35350.1); similar to cysteine protease 14 [Trifolium repens] (GB:AAP32193.1); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Proteinase inhibitor I29, c Range:  from: 7252163    to: 7253720    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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