Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             --------->HSFB2a(2)      --------->ETT(2)                                               <---------------AGL15   <------MYB83                                                      --------------->AGL15 <---------MYB52(1)   <------MYB46(1)                                                  <-----------------AGL3 --------->DOF5.7(2)  --------->MYB59                          <-----------GT1        <-----------GT1         <-------GAMYB  --------->MYB111(1)                 --------->MYB52(2)  --------->GLK1(2)<---------HSFB2a(2)     -- --------ARR14(2)                <---------TOE1(3)        --------->ARR14(2)   --------->ANAC58    <- ------->ARR14(2)                <---------TOE2(3)        <---------ARR14(2)   --------->ANAC58    <-   cgatttggtagacattcttagggtttttggagtttagggtttgtttcacttcttccttcgaatccgatttacttcttgtggaagccatcttccgttatct  7209000                <---------ANAC46                --------->ANAC58                <---------ANAC55(2)                --------->ANAC58             ----------->TGA1            <-----------HVH21        --------->ARR14(1)                                           <---------MYB46(3)          <---       --------->ARR14(2)                                       <---------ANAC58               <-----       <---------ARR14(2)                                       <---------ANAC58               <-----       --------->ARR11(1)                                       <---------ANAC55(1)     <------NtERF2     <---------MYB46(3)                                    <---------GLK1(2)           ----------->GT1 <---------DEAR3(1)                                     <---------HSFB2a(2)            --------->LBD16 ------>ZmHOX2a(2)                                      --------->HSFC1(1)            <---------ANAC46 ------->ARR14(2)                                       --------->HSFB2a(2)        --------->ZAT18 --------AGP1----------->HVH21   <---------ANAC55(2)   <---------ANAC46            <---------DEAR3(1) --------ARR14(2)          ------------>CBF   <------------CBF  <---------ANAC46  --------->ALFIN1   agatcggtggattcggtgacggaagaaaaaacaatatgtaagtaggggaattgagtttcgagaatttcgtgttgttgaaattaagtgggcgggaaaactt  7209100                                                                                 --------->ANAC58                                                                                 --------->ANAC58                                                                   ------>ZmHOX2a(2)                                          ------>ZmHOX2a(2)       <---------At4g35610                                         <------ZmHOX2a(2)       <---------ARR14(2)                                        <---------AGP1           --------->ARR14(2)                                        <---------ARR11(3) --------->ZAT14      --------->RAP2.6(3)    <----------DOF2                     --------->ARR11(3) <---------ZAT14     --------->MYB52(1) --------GT1     <-----------GT1  <---------ZAT2        <-------TEIL        <---------------AtSPL3 ----DAG2   <---------MYB52(1)   --------->ANAC58     <---------SPL7       ---------->DOF2=========== -----DOF2 <-------GAMYB         --------->ANAC58    <---------ANAC46--------->At4g35610  <----------DOF2   taccttctttcgccgttgtttacagcttgtctggcaagctaagatctcaaaaacgacgtacagtactgatctgctaagaaagaacggcaatactttcgct  7209200                <---------TGA1a                =======================bZIP_DOF           --------->ZAT18           <---------ZAT18           <---------ZAT14           --------->ZAT14    <---------YAB1          ---------->DOF2   <---------TOE2(3)      <---------YAB1            <----------DOF2  --------->MYB59  >>>>>>>>>WRKY18  <---------ZAT18        <---------AHL20(2)    <---------AHL20(2)             ------ --------->WRKY12  --------->ZAT18       <---------AHL20(2)  ----------->GT1                --------- ----------->HVH21--------->ALFIN1       --------->AHL20(2) --------->DAG2                  --------- =========================bZIP_DOF   --------->AHL20(2)    ---------->DOF2   ---------->DOF2---------   ccattgacgattgtgcagaagtgggcttataaaagcccatttattaatttttgtcttttgaaaaagttaattaggcctataaaggcccatttaccagcaa  7209300                                                                                        <---------ICU4                                                                                       <---------YAB1     ----------->GT1                            <-----------HVH21                <---------ICU4     <----------ID1            <---------ARR14(2)                                <---------AHL20(2) ---------->DOF2               --------->ARR14(2)  --------->WOX13(1)            -------->HAHB4 ---->DOF2            --------->TOE2(3)<----------DOF2                          <---------ATHB51 >ANAC58             --------->YAB1   ------>ZmHOX2a(2)     <-----------GT1     --------->ICU4 >ANAC46            <---------ATHB12<---------ARR11(3)     *TSS    <---------AHL20(2)--------->YAB1 < >ANAC58        ------------>CBF    --------->ARR11(3)  <-----------TBP         <---------YAB1 <-----   agcgaaagagaaaaaaaaaacaatcgttaagacgattcgatcttttgctgtgtcagtcatttatacgattttttttttgttaattattcatcatttcatc  7209400                                                                                              =======                                                                                              ------>ZmHOX2a(2)                                                                                          -----------                                                                                         <---------MYB52(1)                            --------->GLK1(2)                                           --------->LBD16                     --------->HSFB2a(2)                                           --------->ZAT2                     <---------HSFB2a(2) --------->ARR11(3)                        --------->At4g35610                 <---------ANAC58       <------ZmHOX2a(1)                          <---------At4g35610    --------->ARR14(2)     <---------GLK1(1)     ------>ZmHOX2a(2)                 <---------ZAT2    <---------ARR14(2)     --------->GLK1(1) <---------YAB1                       ----------->ARR10 < -----------------AGL1----------->GT1   ================HOX2a_HOX2a              <--------P  <------- ----At4g35610   <---------ANAC58    --------->CCA1(2)             --------->TOE2(3)  <---------LBD16   tgttcgaatcgggcaattttcgtctggagaaatctggagataggattttgatcgatttctaagctctaatctcagttttttgggtagctccggtgatcct  7209500                  ------>ZmHOX2a(1)                --------->YAB1              --------->GLK1(2)                                                              <-------              --------->ARR14(2)                                                           <---------ZAT2              <---------ARR14(2)                                                           <---------At4g35610             <---------GLK1(2)                                                       ------>NtERF2      <---------MYB46(3)                                                            <---------PCF2      --------->LBD16                                                             <---------MYB46(3)     <---------ANAC58                                                            <-----------RAV1(1)     <---------ANAC58                                                            --------->ALFIN1     <---------ANAC46                                                         --------->ATHB12    <---------LBD16                                                          <------ZmHOX2a(2)  --------->ALFIN1================HOX2a_HOX2a                               <---------ARR14(2) ========================HOX2a_HOX2a                    --------->ARR14(2)  --------->ARR14(2) ------ >HVH21 <-----------HVH21                        ---------->DOF2         --------->ETT(1) --------->GLK1(2) ---------At4g35610                  ------>NtERF2      <---------ARR14(2)<---------DEAR3(2) <------- --YAB1<------NtERF2       <------ZmHOX2a(2)   ---------->DOF2       <---------AtMYB61<------NtERF2   tgagatggcgggtcagaatcctaacatggatcaattcgaggcctacttcaaaagagcagatttagacggagatggtcggatcagtggtgccgaagctgtt  7209600                                                                                                 ----                                                                                                -----             ------>ZmHOX2a(2)                                                                  <----           --------->GLK1(2)                                          <----------DOF2          ------           --------->ARR14(2)                                 ------>ZmHOX2a(2)                <-----           --------->ARR11(3)                                <---------GLK1(1)                 ------           <---------ARR14(2)            --------->At4g35610 --------->GLK1(1)                 <-----           <---------AGP1                --------->ZAT2     <---------ARR11(3)                 ------ --MYB46(3)<---------ARR11(3)            <---------ZAT2     --------->ARR11(3)               -------- ----------------->TaNAC69(2)          <-----------RAV1(2)  <---------AGP1<---------YAB1   ---------- ----RAV1(1)<------ZmHOX2a(2) <---------GLK1(2)            <---------CCA1(2) <---------WOX13(1)<-----   ggattttttcaaggatctggtttgtctaagcaggttctcgcccaggtgaacatttcttcttggatctctctgctttctgattgtttctcgctagaaagat  7209700                                                     --------->KAN4(2)                                                    <---------MYB46(3)    <---------ANAC58                               <---------WOX13(1)    <---------ANAC58                      <---------MYB52(1) -->ZmHOX2a(2)                           --------->LBD16 ---->CCA1(2)                            <---------RAP2.6(3) --ZmHOX2a(2)               --------->GLK1(1)    --------->ATHB12 --->ARR14(2)    <---------At4g35610    <---------ANAC55(2) ----ARR14(2)    --------->At4g35610    <---------ANAC58 --->ARR11(3)    <---------ZAT2         <---------ANAC58                                      <------ ----ARR11(3)    --------->ZAT2         <---------ANAC55(1)                                   <------ --->AGP1       ------->TEIL<---------GLK1(1)   <---------YAB1                                <------ --->ARR10   --------->ANAC58           --------->ANAC55(2)                         --------->GLK1(2) >DOF2       --------->ANAC58           <---------ANAC46                           <---------ARR11(3) ----AGP1    --------->ANAC46      ---------->DOF2>>>>>>>>>ARR2                    --------->ARR11(3)   ctgatttcgttttctacgcagctgatttgggtttccaaaatgccgtgattttgattgttccatttgaattgcattctatttctgagattttgaattgcct  7209800                                                                                              -------                                                                   <---------REM1(1)         --------                                         <---------ANAC58         --------------->AtSPL8  <---------ARR14(2)                           --------->CCA1(2)                     <---------ANAC46   ------->TEIL        --------->YAB1    --------->ARR14(2)                  <----------DOF2    --------->ANAC55(2) ------->TEIL             <---------ARR14(2)----------->GT1<---------ARR11(3)    <---------ANAC55(2) ---ANAC58              ----------->ARR10<---------ANAC46  --------->ARR11(3) --------->ICU4 <------- ---ANAC46           <-----------HVH21   <---------ANAC58 <---------CCA1(2) --------->YAB1------->TEIL ---ANAC58      <---------LBD16   <-------TEIL        <----------DOF2    --------->ANAC46 --------->ARR14(2)   atgaacttaataagaattcacggggtcagatttgagtacatttgtgtggaaataagctttaaatctttggtgtaccagtaattatgtatttgaatctgga  7209900  Previous    Next  AGI:  At1g20750.1    Description:  helicase-related. similar to helicase-related [Arabidopsis thaliana] (TAIR:AT1G20720.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66250.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN84083.1); similar to hypothetical protein OsJ_029077 [Oryza sativa (japonica cultivar-group)] (GB:EAZ45594.1); contains InterPro domain DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020); contains InterPro domain DEAD2; (InterPro:IPR010614); contains InterPro domain Helicase, ATP-dependent, c2 type; (InterPro:IPR006555); contains InterPro domain DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site; (InterPro:IPR0024 Range:  from: 7203292    to: 7208988    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g20760.1    Description:  calcium-binding EF hand family protein. similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT1G21630.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80127.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66253.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain EPS15 homology (EH) (InterPro:IPR000261); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) Range:  from: 7209359    to: 7214982    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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