Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        <---------At5g28300                      --------->TOE2(3)                      <---------ARR14(2)                                    <---------ARR11(3)                      <---------ARR11(3)                           --------->ATHB12                      <-----------ARR10                            --------->ATHB51                      --------->GLK1(2)                            <---------ICU4 <---------ALFIN1     --------->ARR14(2)--------->ZAT6            --------->ICU4 -----DOF2        <------ZmHOX2a(1)  <-----------GT1              <---------YAB1           <---------ATHB12 ->At4g35610   <-----------RAV1(2)--------->ARR14(2)            --------->YAB1----------->GT1     --- --At4g35610  <-------TEIL   <-----------GT1                   <---------ATHB12--------->TOE1(3) ----   tctccacatttgtagatgcaggagtatctattcacagatttaccactattcagagataaacccaaatcataattgcaatatcgttaagagtcaatgacga  7192400                                                             --------->LBD16                                                           <-----------RAV1(2)                                                          xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                         <----------DOF2                                                         <-----------HVH21                                                       --------->At4g35610                                                       <---------At4g35610                        <<<<<<<<<GATA-2              <---------RAP2.6(2)                        <<<<<<<<<GATA-4             <---------At4g35610                        <<<<<<<<<GATA-3             --------->ATERF1(1)                        <<<<<<<<<GATA-1             <------NtERF2                       --------->ARR14(2)          --------->MYB55(2)              <---------LBD16                      <---------MYB46(3)              <---------ANAC46                     ------>NtERF2            <---------ARR14(2)                     --------->ABI4(2)            --------->ARR14(2)                 <---------DEAR3(1)  --------->At4g35610          <----------DOF2                      ------>ZmHOX2a(2)   <---------ZAT2         <---------ANAC58         <---------YAB1   <---------ATERF1(1)        <----------ID1        <         <---------ANAC46    --------->AtMYB61 <---------MYB46(3)  <---------At4g35610             <-      <--------P--------->LBD16   <---------ATHB12<---------DEAR3(1) <----------DOF2         --------     <-------GAMYB     ------->TEIL          <---------ARR14(2)    --------->ZAT2            <------- -------->RAV1(2)<---------MYB52(1)          --------->ARR14(2)    <------NtERF2          <----------DOF2 --->TEIL<---------ANAC58 <---------ALFIN1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       <-----------GT1   acctgagggttgcgtttccggtatgaatccacctccatgattcaatggatcggtggctgcttcaggggcagctttcgaatgagacaaatttccttttaga  7192500                                                                                             --------                                                                                       --------->ALFIN1                                                                                       ----------->HVH21                                   --------->At4g35610                                ------->MYC3                                   <---------At4g35610      <-------PIF5              <-------MYC3  <------NtERF2                    --------->ZAT14          ------->PIF5             >>>>>>>>CAMTA3 --------->LBD16       --------->ANAC58              --------->CCA1(2)               <---------ANAC58 ---------LBD16        --------->ANAC58     ----------->HVH21----------->HVH21       <---------ANAC58 --------LBD16  <-------GAMYB      <---------ZAT2   --------->ARR14(2)        --------->ANAC58 ->HSFB2a(2)    <---------At4g35610<---------ZAT14  <---------ARR14(2)        --------->ANAC58 <----- --HSFB2a(2)   <-----------RAV1(1) --------->ZAT2 ----------->ARR10--------->ALFIN1  <---------O2   agccgggatttatagttctgttgccaagcgagaactgagcagagcaatgacagagatttgcccgtgccagtgggagactcgagcaacgcgtggcagtgac  7192600                         --------->CCA1(2)                        <---------ARR14(2)      --------->ZAT2                        --------->ARR11(1) --------->ANAC58      <---------MYB46(3)                        <---------ARR11(3) --------->ANAC46    <-------GAMYB                       <-                      ----------->ARR10    --------->ANAC58 --------->SPL7                         <-           --------->ANAC58      --------->LBD16--------->At4g35610                               ---        <---------ZAT18 --------->ARR14(2)------->TEIL    <---------SPL7   --------->GLK1(1)      --- --->HVH21 --------->ANAC58----------->HVH21    <---------ZAT2----------->GT1                  <----- ----At5g28300<------ZmHOX2a(2)<---------LBD16  <---------At4g35610   --------->DAG2           ------   cgtctctctgggcacgatcgagcgtagatatgacccggctcatgaacgcaagctgggttccatacggttgataagggaattcaacttgaaggcctccgat  7192700                                                                       <---------TOE2(3)                                                                    <--------P                                                                   <-------GAMYB                                                                  <---------MYB46(3)             ----                                                                 <---------------AGL15           ----  --------->ETT(2)                                              <-----------------AGL1         <----- -----MYB46(1)                                                  <---------ANAC58               <----- -----MYB83                                                <---------ARR14(2)                  <----- ------>MYB59                <---------TOE2(3)             --------->ARR14(2)                 <------ ------>MYB111(1)            <---------TOE1(3)   <----------DOF2<---------ANAC58              <------ ----ARR14(2)<---------TOE2(3)         <-----------GT1<---------ARR14(2)               --------->ETT(2) --->ARR14(2)<---------TOE1(3)    --------->MYB52(2)  --------->ARR14(2) <------ZmHOX2a(1)    <------   ttggtagacatttttagggtttttggagtttagggtttgtttcacttcttcctttgaatccgatttgctggttgaggaaaccatcttcgtcgagagtcgg  7192800                                                                   <---------HSFC1(2)                                                                   --------->HSFC1(2) ------->HVH21                                                     --------->HSFB2a(1) ----->WRKY38(1)                                               ----------->GT1 -MYB46(1)                                                     <------NtERF2 -MYB83                             ------------>CBF          --------->LBD16 ----DEAR3(2)                 <---------ANAC46                ----------->GT1 <---------DAG2 ---DEAR3(1)                  <------------CBF               <---------ANAC46 <----------DOF2 ---MYB46(3)         --------->HSFB2a(2)                    <---------LBD16  <---------DAG2       <-- ---DREB2C(2)        <---------HSFB2a(2)       <---------MYB46(3)  <---------HSFB2a(1)         <-----   tgactgaagaaaaatgagaactacgagaagtggattggagcaattcgcgttgttgataaatgggcgggaaaattcgaccccttttcgagtttctcttctt  7192900         <------------CBF      ------>NtERF2      <------NtERF2     --------->RAP2.6(2)     --------->ANAC58     --------->ANAC46     --------->ANAC58    --------->DEAR3(1)    --------->MYB46(3)   --------->ATERF1(1)                                                              --------->LBD16   <------NtERF2                                                                   <---------ANAC46   --------->DREB2C(1)                                                             <---------ANAC55(1)   <---------ATERF1(1)                                                             <---------ANAC58   <---------DREB2C(1)                                                             <---------ANAC58  <---------ATERF1(1)                                    --------->AHL20(2)        <---------ANAC55(2)  --------->PCF2                               <---------ALFIN1                    --------->ANAC55(2)  <---------RAP2.3(1)    --------->At4g35610  <-------TEIL               ------------>CBF         <--  <---------SPL7         <---------ZAT2    <---------ANAC46            --------->ANAC58      --------  ------>NtERF2          <---------At4g35610<---------SPL7             --------->ANAC58   <---------- <---------RAP2.6(2)     --------->ZAT2   --------------->AtSPL8  <---------------AtSPL3  ----------- ---------RAV1(1)     <--------P    ---------->DOF2  <---------YAB1  --------->MYB52(1) <---------YAB1 -----DOF2     <---------At5g28300  <---------AHL20(2)  <---------YAB1--------->RAP2.6(3)--------->ATHB12   ttggcgcccgccattgttactgtggtaagctgggacattaaaacgacgtacacttctgattatttaagagagaacggcaatacttccgtgttcattgaaa  7193000         <------------CBF        --------->ATHB12        <---------ICU4        --------->ATHB51       <---------YAB1    <-----------------AGL3    ----------------->AGL3    ----------------->AGL2         <------------CBF ----------CBF                  ------------>CBF       <------------CBF ->AHL20(2)                <------------CBF          <---------YAB1 --CBF --------->ICU4    <---------YAB1            <----------DOF2     <----------DOF2         <----- ---------->WRI1         <---------AHL20(2)     <---------ALFIN1 ------------>CBF   --------->AHL20(1)   tattggaccataattggatgcccattttttattgttcaattgtcttctctccactttcattgtattatgcaatctttttgtcaaaacatattacacatag  7193100                                                                 <---------ICU4                                                            <---------YAB1                                                        --------->YAB1                                                        <---------AHL20(2)                                                     --------->YAB1                                                   --------->AHL20(2)          --------->ANAC58                         --------->AHL20(1)                     <----------DOF2          --------->ANAC46                        --------->YAB1 <--------ATHB1        <-----------GT1          --------->ANAC58   <---------REM1(1)  --------->AHL20(2)                   <---------AHL20(2) ----TOE2(2)     <-----------GT1         ----------->GT1--------->AHL20(2)      <---------AHL20(2)   gtaagagttttcaagctattaacacatgatgttgtagtttggaatgcaaaaaaaataataatatgaataattctctcattagtttattttttctttacaa  7193200                                                                                      <---------AHL20(2)                                                                                     <---------AHL20(2)                       <---------AHL20(2)                                            <---------AHL20(1)                      --------->AHL20(2)                                             --------->AHL20(1)                     <---------YAB1                                                  --------->AHL20(2)                    --------->AHL20(1)   ----------->GT1                        --------->AHL20(2)                    --------->AHL20(2)  ----------->GT1                         <---------AHL20(2)                   <---------ICU4      --------->DAG2                       ----------->GT1                  --------->ICU4      ---------->DOF2                      --------->DAG2       --------->AHL20(2) --------->AHL20(2)           ------>ZmHOX2a(2)  ---------->DOF2       <---------AHL20(2) <---------AHL20(2)--------->AHL20(2)----------->GT1----------->GT1   aacacctatataattttctaaatattatataaatataagaaaaagtttaaattttgatccaaaaatgaaaaaatgaaaaagtttaaataaaatttagaaa  7193300  Previous    Next  AGI:  At1g20720.1    Description:  helicase-related. similar to helicase-related [Arabidopsis thaliana] (TAIR:AT1G20750.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66250.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN84083.1); similar to hypothetical protein OsJ_029077 [Oryza sativa (japonica cultivar-group)] (GB:EAZ45594.1); contains InterPro domain DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020); contains InterPro domain DEAD2; (InterPro:IPR010614); contains InterPro domain Helicase, ATP-dependent, c2 type; (InterPro:IPR006555); contains InterPro domain Helicase-like, DEXD box c2 type; (InterPro:IPR006554); contains InterPro domain H Range:  from: 7185648    to: 7192784    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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