Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   --------->AHL20(1)                                                                 <---------AHL20(1)                                                                 --------->AHL20(2)                                                                --------->YAB1                                                          ----------->GT1                                                      --------->ANAC58                                                      --------->ANAC58                                                  --------->ANAC46 --------->YAB1                                                  --------->ANAC58<---------YAB1                                                  --------->ANAC58<---------AHL20(2)     <---------AHL20(2)       --------->ANAC58    <---------ANAC55(2)                             --- >DOF2         <-----------GT1--------->ANAC58    --------->ANAC55(2) <---------ICU4    <-----------GT1   ctcttaataaatgtgtttcacaaactgtgatcaagctaaattgactaatattacgcaagttagtaaatataataagggcatgttgacttaatactcttca  7179000                                                                          ---------->DOF2                                                                      <---------------AGL15                                                                      --------------->AGL15                                                                     <-----------------AG                                                                     <---------AtLEC2                                                                     ----------------->AGL1         --------->ANAC55(2)          --------->ALFIN1               <---------ANAC58  --------->TOE2(2)         <---------ANAC55(2)         <-------MYC3                    <-----------------AGL1        <---------ICU4               <-------MYC2         ------>ZmHOX2a(1)       <---------AHL20(2)       --------->ICU4                ------->MYC3<------ZmHOX2a(2)   <---------ANAC58  --------->TOE1(2)  ----------->GT1                    ------->MYC2================HOX2a_HOX2a      --------->AHL20(2) ------->DOF2                      ------->TEIL --------->ARR11(3)   <---------ANAC46 --------->YAB1-   gaaagagtaataagtaatccatctctaatcttccatgaacgtgttgatgagatcaatttcctcttcattttgcctgaaaaggaattaaacataagattac  7179100                                                                      --------->ARR14(2)                                                                      --------->ARR11(1)                                   ------>ZmHOX2a(2)                  <---------ARR14(2)                                   ====================================HOX2a_HOX2a                                   ================================HOX2a_HOX2a                                  =================================HOX2a_HOX2a                                  <------ZmHOX2a(2)                  --------->HSFC1(2)                                 --------->AGP1                      --------->HSFB2a(1)                                 <---------AGP1   --------->AHL20(2) <---------HSFC1(2)                                 --------->ARR11(3)  --------->AHL20(1)                                 <---------ARR14(2)  <---------AHL20(1) <-------TEIL                     <-----------GT1              --------->YAB1     <---------HSFB2a(1)                --------->AHL20(2)=====================================HOX2a_HOX2a               <---------YAB1    <---------ARR11(3)  <---------AHL20(2)--------->ARR14(1)            --------->ICU4       --------->ARR14(2)  --------->AHL20(2)--------->CCA1(2)  <----------DOF2     ----------->GT1<---------AHL20(2)         --------->YAB1       ----------->ARR10 ===============     <---------ANAC55(2)--------->YAB1       <---------YAB1     <------ZmHOX2a(1)     ===============  <---------ATHB12  --------->AHL20(2)   ----------->GT1    <------ZmHOX2a(1)         ------>ZmHOX2a(1) -------->GLK1(1)  --------->AHL20(2)  ---------->DOF2    <---------TOE2(3)    <---------YAB1       <   agaaatcatgtgaattgattatttaatcatatacagatctgtaaagtattaataatattttaggaaggagaagattcgagtatgattcctcgctttcaaa  7179200            ------>ZmHOX2a(2)           --------->GLK1(1)           <------ZmHOX2a(2)                                     --------->ANAC58       --------->MYB46(3)                                        --------->ANAC46     --------->MYB52(1)                                   --------->ANAC46     ------>MYB83                                         --------->ANAC58     ------>MYB46(1)        ----------->GT1               --------->ANAC58    ----------->HVH21      <---------------AtSPL8         --------->ANAC55(2)   <---------MYB46(2)--------->AHL20(2)      <---------------AtSPL8  --------->ANAC58   <---------MYB59   --------->AHL20(1)      --------------->AtSPL8  --------->ANAC58 =================HOX2a_HOX2a      ----------->GT1       <---------------------WRI1             <---- ==================HOX2a_HOX2a   ---------->DOF2        <-----------GT1        ---------->DOF2  ===== -----------GT1      <---------AHL20(2)      <---------ICU4      --------->ANAC58              <-----   tttgacctaaccgatctcttaaataaaatatagtacaaagtaaaaaataagtacaaatttacgaaacacacaagaaaacacataagcgagagagagagat  7179300                                                           ==========================================                                                           --------->bZIP60(1)                                                           <---------bZIP60(2)                                                           <---------O2                                                           <---------bZIP60(1)                                                           <---------ANAC58                                                           <---------ANAC58                                                           <---------TGA1a                                                           --------->ANAC55(2)                                                           --------->TGA1a                                                           <---------ANAC55(2)                                                           --------->O2--------->AHL20(1)                                                           <---------ANAC46                                                          ----------->bZIP910(1)                                                          ----------->STF1                                                          ----------->bZIP911(1)                                                         <---------TGA2(2)                                                        ----------->TGA1<---------YAB1         --------->DAG2           <---------ZAT14       ----------->HVH21            --------->LBD16       ---------->DOF2            --------->ZAT14    ------>ZmHOX2a(2) <---------AHL20(2)  <------ZmHOX2a(1)      ============================================bZIP_DOF      <---------LBD16  ----------->GT1        ---------->DOF2            <------ZmHOX2a(2)  <---------AHL20(1) ----------->GT1   --------->GLK1(2)               --------->ARR14(2) --------->YAB1 ------>NtERF2 --ZmHOX2a(2) <------NtERF2--------->ANAC58        <---------ARR14(2) <---------AHL20(2) ========HOX2a_HOX2a----------->GT1         --------->AtMYB61         --------->AHL20(2) ----ARR11(3)------>NtERF2 --------->ANAC58--------->MYB46(3)--------->ALFIN1  <---------GLK1(1) ----   caaaggataaaaaggcgcgagaatgtgaaaagccagtgaagagaaaccactcggatcgatgacgtggccaaattatatttgaaatcccgcctaaacccct  7179400                                     --------->AHL20(2)                                     <---------AHL20(2)               <---------ALFIN1                                 <----------DOF2             <-----------GT1                              --------->ARR11(3)            <-----------GT1                              <---------ARR11(3)           <---------AHL20(2)                              --------->AHL20(1)       <---------RVE1(1)                              <---------AHL20(1)       <---------CCA1(1)                             --------->RVE1(1)        <---------ARR11(3)      ------->GAMYB    ------       <-----------GT1       --------->CCA1(1)        <---------AHL20(1)   <-----------GT1     <----- =======bZIP_DOF        ----------->GT1               --------->ARR11(3)--------->ANAC46    ------>NtERF2 ------>DOF2          <------------CBF    *TSS  --------->YAB1     --------->ANAC46  <---------CCA1(2)   aaagaattttgacaactcgtgggaaattgaaatatctttttaatttcttctcataagatattttaacatcccccacttaaccctctcatctctcggcctc  7179500                                                                                                  <<<                                                                                             ------>ZmHOX2a(2)                                                                                             ========                    ----------->GT1                                                         <------ZmHOX2a(2)           ------>ZmHOX2a(1)                                                                =========      --------->HSFB2a(1)                                                                  <---------ARR14(2)      --------->GLK1(1)                                                                    --------->ARR14(2)     <-----------ARR10                                                                     <---------ARR11(3)     <---------ARR11(1)                                                                    --------->ARR11(3)     --------->ARR14(2)                             <----------DOF2                        --------->ARR14(3)     <---------ARR14(2)              <---------ANAC55(2)                                   <---------ARR14(3)     ------->TEIL   <---------ANAC58 --------->ANAC46                                      <---------    <---------GLK1(2)     --------->ANAC46--------->ICU4                                 ----------->ARR10    <---------CCA1(2)--------->ZAT18 --------->ANAC55(2)                             --------->SPL7 --->At4g35610      <---------ANAC58 --------->ANAC58 <-----------GT1              --------->TOE2(2) ----At4g35610  ---------->DOF2      --------->ANAC58--------->ZAT14               --------->TOE1(2)   tcactcgaatctccttcacaaagcgtacaaatcacaaacacgtagttattctctctttactctctctatttctctctcttcaaaccctacgaagatcttc  7179600          <---------TOE2(3)                                                          <------ZmHOX2a(2)    <<<<<<<<<TBF1     ------>ZmHOX2a(1)                         =============================HOX2a_HOX2a <<<<<<<<<TBF1    <-----------GT1                  <---------ANAC58               <---------ANAC58 <<<<<<TBF1----------->GT1<---------GLK1(2)     --------->ARR14(2)            <-------GAMYB ============================HOX2a_HOX2a  <-----------GT1       ============================HOX2a_HOX2a ============================HOX2a_HOX2a <-----------GT1        ------>ZmHOX2a(1) <---------ANAC58 <- --ARR10  <---------TOE1(3)      ------>ZmHOX2a(1) <---------ANAC58  <---------GLK1(2)------>ZmHOX2a(2)   ttcttcttcttcaaggtaattttcctccgattttcctcgattttttccagtttccgtctctaattcctcttgattctctgcgttgcgatctctagatttg  7179700                                                        <---------ANAC46                                                      <---------At4g35610                                          --------->KAN4(2)                                          <---------ARR14(2)                                         <---------KAN4(1)                                         <----------TaMYB80                                         --------->KAN4(1)                                         <---------HSFB2a(1)                                         --------->HSFB2a(1)                                        ---------->TaMYB80                         ------>ZmHOX2a(1)--------->ARR14(2)             <---------ICU4             <---------KAN4(2)                                <----------DOF2            <---------YAB1              <---------ARR14(2)                      =====================            --------->ICU4  <---------At4g35610       --------->At4g35610       ------>ZmHOX2a(1)            <---------ATHB51--------->At4g35610 <----------DOF2         <---------AHL20(2)      ---------->ID1 <-----------GT1    --------->ARR14(2) <------------------------ANAC81         <- --------ICU4--------->ATHB51   ----------->ARR10    <-----------RAV1(1)--------->AHL20(2)         --   atcattttgtctccataattgtttttcctccgcttagaaccgaatattctcttttctgctgtgtttttctatgtttaatttcctatttctacttttgttt  7179800              ---------->DOF2            <---------YAB1          --------->YAB1         <------ZmHOX2a(2)    --------->GLK1(2)   --------->ARR14(2)   <---------ARR14(2)                        --------->At4g35610   <---------GLK1(2)                       <------ZmHOX2a(1)                                       -- ===============HOX2a_HOX2a             <-----------RAV1(2)                        <---------AHL20(2) --------At4g35610            <---------TOE2(3)  ---------->DOF2               <---------AHL20(2)  -- ------->At4g35610  --------->At4g35610 <---------LBD16----------->GT1        <---------YAB1    <----   ctgcagaatcgatcatgaaaggagctaaatctaaggctgaaaccaggagcacaaagtgagttaattcacatagatcgatttttatttttttgtttgctag  7179900  Previous    Next  AGI:  At1g20696.1    Description:  HMGB3 (HIGH MOBILITY GROUP B 3); transcription factor. similar to HMGB2 (HIGH MOBILITY GROUP B 2) [Arabidopsis thaliana] (TAIR:AT1G20693.2); similar to HMGB2 (HIGH MOBILITY GROUP B 2), transcription factor [Arabidopsis thaliana] (TAIR:AT1G20693.1); similar to HMGB2 (HIGH MOBILITY GROUP B 2) [Arabidopsis thaliana] (TAIR:AT1G20693.3); similar to unknown [Populus trichocarpa] (GB:ABK95882.1); contains InterPro domain High mobility group box, HMG1/HMG2, subgroup; (InterPro:IPR000135); contains InterPro domain High mobility group box, HMG1/HMG2; (InterPro:IPR000910); contains InterPro domain High mobility group box, HMG (InterPro:IPR009071) Range:  from: 7179442    to: 7181489    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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