Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             <---------DEAR3(1)                                                                          <------NtERF2                                                                          --------->ATERF1(1)                                                                         <---------ORA47(2)                                                                         <---------ERF1                                                                         ------>NtERF2                                                                        <---------DEAR3(1)                                                                        <---------RAP2.6(2)                                                                        --------->ATERF1(2)                                                                        <---------ATERF1(2)                                                                        <---------RAP2.3(2)                                                                        <---------RAP2.3(3)                             <------ZmHOX2a(2)                          <---------RRTF1(3)                            --------->ARR14(2)                ------>ZmHOX2a(1)      <---------GLK1(1)                            <---------ARR14(2)                <---------MYB52(1)     --------->At4g35610                           ============================HOX2a_HOX2a      <---------ANAC46                   --------->ANAC58                          --------->TOE2(3)       --------->GLK1(1)                 ---------->DOF2                =====================HOX2a_HOX2a     <---------At4g35610              --------->ANAC58<-------TEIL      <------ZmHOX2a(2)       <---------DREB2C(2)              --------->ANAC58------>ZmHOX2a(2)<---------ARR11(3)       <---------RRTF1(2)------>ZmHOX2a(1)      xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  ---------->DOF2   --------->TOE1(3)  <-----------RAV1(2)   ---------->DOF2 --------->ANAC58   ----------->GT1      <---------YAB1<---------RAP2.3(1)     <--- -->MYB46(3)---------->DOF2<------ZmHOX2a(1)   --------->ARR11(3)  <---------ICU4  <------ZmHOX2a(1)-   acatataaagactacaaagcaaagcaagaggatccatggacgataaaaagatcaaaatgttatccttagttatggcggcgatgcaggagctcctcatata  7176400                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                   --------->ANAC46                                                                                   --------->ANAC58                                                                     <---------ARR14(2)      <-------                                                                     ------>MYB46(1)    <---------MYB52(2)                                                                     ------>MYB83<---------ATERF1(1)                                                                     --------->ARR14(2)<---------At4g35610                                                                     --------->MYB52(1)--------->At4g35610                      ------>MYB46(1)                              <---------MYB59 --------->ANAC58                      ------>MYB83                              --------->MYB52(1)<------NtERF2------             --------->ANAC58                            <---------ICU4          ------>NtERF2 ------             --------->ANAC46                        <---------AHL20(2)         --------->DEAR3(1)           <-----------GT1  --------->AHL20(2)       --------->AHL20(2)         ----------->HVH21   < --------GT1 --------->ANAC58        --------->At4g35610 <---------AHL20(2)     <---------DEAR3(1) -- -------->AtMYB61--------->MYB52(1)--------->YAB1   --------->AHL20(2)     --------->SPL7 --------->MYB52(1)   taccacagcaatttcacccaaaccgaacattttaaaatcagaagccctagcaaaattaataaatccaaaccgaaccggatggccgacgcagcaaaccgaa  7176500                                      <---------ICU4                                    --------->LBD16                                   --------->ANAC46   ------>ZmHOX2a(2)               --------->ANAC55(2)                 <------ZmHOX2a(1)  <------ZmHOX2a(2)                <---------ANAC55(2)          --------->ATHB51 <---------ARR14(2)               <---------LBD16               <---------ICU4 <---------ARR11(3)          <---------AHL20(2)             <---------AHL20(2) <---------GLK1(2)           --------->ATHB51               --------->AHL20(1) --------->ARR14(2)          <---------ICU4                 --------->AHL20(2) --->MYB52(1)                --------->AHL20(2)            <---------AHL20(2) >MYB83                     --------->ICU4                 --------->AHL20(2) ----ARR14(2)               <---------YAB1        --------->YAB1--------->AHL20(2) --MYB59                  <---------ICU4  <---------At5g28300   <---------AHL20(2) --->ARR14(2)             --------->YAB1 <-----------GT1<---------AHL20(2)               <---------ATHB12 >MYB46(1)                <--------HAHB4 <---------ICU4 --------->AHL20(2)               --------->ICU4 ---------ARR14(1)       --------->AHL20(2)      <---------YAB1--------->ICU4    --------->MYB52(1) ------->LBD16           --------->ICU4 --------->ICU4 --------->AHL20(2)     --------->YAB1    <----   ccggatccttgaagggattgaatgcgaataattatttccgtaattactgctatgattttaaattaattatttaggaccaaaaataagggcaatgagtcat  7176600                                                                                              -------                                                                                              <------                                                                                            ---------                                                                                           <---------ATHB12                                                                                           --------->ICU4                                                     ---------->DOF2                   ------------>CBF       --------->At4g35610                           --------->MYB52(1)             --------->MYB46(3)       <---------At4g35610                         xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)------->GAMYB       ------>NtERF2                          --------->ANAC55(1)             ----------->HVH21 <---------ANAC58                             --------->ANAC55(2)           --------->At4g35610 <---------ANAC58                             --------->ANAC46              <---------At4g35610 -----CCA1(2)                                 <---------ANAC55(2) --------->YAB1  --------->MYB52(1)   atcgcttgccgctgaattctcacgctgagaagaagcacaagagaaaacacataaccaaaggcctagaatcaaaacttgagatgacaacggccaatgatgt  7176700                                          ------>NtERF2                                            <-                             <---------AHL20(2)                                                    --                            <---------ARR11(3)                                                    ---                            --------->AHL20(2)                                                 ------                            <---------AHL20(1)                                                 <-----                 <---------bZIP60(2)      --------->LBD16                                      <-----                 ----------->RAV1(2)    <---------LBD16                                        ------              ----------->HVH21     <---------GLK1(1)               <---------ANAC46 <---------AHL20(2)      --------->ANAC58      <---------AHL20(2)                      <---------ANAC58<---------AHL20(1) ---->GT1<------------CBF   --------->ARR11(3)                      <---------ANAC58--------->AHL20(2) ---ANAC46<---------WOX13(1)--------->AHL20(1)                   *TSS--------->TOE1(2)   <-----------GT1 >YAB1--------->ANAC58     --------->AHL20(2)                <-----------GT1        <---------AHL20(2)   gaaaccacaaggattgatgacctggcaaaatatatttgaaatcccgcctaaacccctcagtttttacatttcgtgcgaaatttcaatttttttgcaatat  7176800           -------->ZAP1         <---------WRKY18(1)        ----------->HVH21       <---------WOX13(1)  --------->ANAC58     --------->ATHB12      --------->ANAC58 --------->ATHB12          --------->ANAC46 ---------DOF2         <-----------GT1 ---->ZmHOX2a(1)  <---------RVE1(1)                                                 ----------->RAV1(1) ------>TOE2(3)   <---------CCA1(1)                                           ------->TEIL         -- --->ARR11(3)    <---------ARR14(2)                                          <---------CCA1(2)    <-- ----ARR11(3)    <---------ARR11(3)                                          <---------GLK1(2)  ----- ----ARR14(2)    --------->ARR11(3)                                 --------->At4g35610       <------ZmHOX2a(2) --->ARR14(2)  ----------->ARR10        ---------->DOF2             <---------At4g35610---------->DOF2   cctttattgattgaccgaagatattttacaagcctttctccactaagcccttctctcttcttctcttggcctctcacttgaatctcccacaaagcgatca  7176900                                      ----------->GT1                                               <                                     <---------TOE1(3)                                             <-                                     <---------TOE2(3)                                             --                               ---------->ID1                                                      <- ------->YAB1                <---------ANAC58           <-----------GT1                            -- -------ATHB12               <---------ANAC58     ---------->ID1      <-----------GT1          <----- ---->WOX13(1)           <----------DOF2   --------->ICU4     <----------DOF2   ------->TEIL<--------   atcacaaattccttcttctctctctctcttttcgtccctaaggtaatttttcttcgtttttcttctttgattttgctgtttgaatctcgtttttgtgtta  7177000                                                                                                <---- ------>ZmHOX2a(2)                                                         <---------WOX13(1)   <---- ------ZmHOX2a(2)                                                        --------->ATHB12       <---- --------ARR14(2)                                                       <---------YAB1    <---------WRKY18(1) ------->ARR14(2)                                                   --------->HSFB2a(2)   --------->ATHB12 --------ARR11(3)                                                   <---------HSFB2a(2)  ----------->HVH21 ------->ARR11(3)                                                  <---------LBD16     <---------ANAC58 ------GT1                              <-----------GT1    <---------ARR11(3)          <---------ANAC58 -ZAT6 <---------AtMYB61    --------->YAB1                 --------->ARR11(3)        <---------YAB1   cgatctgttttggtgatagtttttggctattcatatcgaattctacgtttcgaaatttgaatatcatgttctggatgattgcgatttatgcttgactggc  7177100                                                                  <-----------GT1                                                                 --------->ATHB51                                                                 <---------ICU4                                                        ------->TEIL -----ANAC58                                         <---------YAB1       --------------->AGL15   --- -----ANAC46                                    <---------At4g35610    <----------DOF2     --------->KAN4(2) -----ANAC58      --------->HSFB2a(2)    ------>ZmHOX2a(2)       --------->YAB1           <---------KAN4(1)   ttagtttctgtagcatctatctcgaattttgtatttgtatcgatctgtttagatgatgaattttcaattatcgcttctatgtatagaattgaatgttctg  7177200                                                                             --------->At4g35610                                      ----------->HVH21                ---------->DOF2                                      --------->WRKY12               <---------YAB1                                      --------->WRKY38(1)          --------->YAB1                                    <---------At4g35610            <---------ICU4                                    --------->At4g35610           <---------ATHB51                  =                       --------->ATHB12------>NtERF2              <---------ATHB12                  <                 --------->ZAT14   <---------DEAR3(1)           --------->WOX13(1)               <---                 <---------ZAT14<---------ANAC58             --------->GLK1(2)                   <--- ---->TEIL       <---------ZAT18<---------ANAC58   <---------YAB1 --------->ICU4     ---------->DOF2=   catcttgctatatatgtagtatacttgattagtttcgtcgctgaccttgtgatatgtttgcagaatcaattatgaaaggagctaaatcaaagactgaaac  7177300  Previous    Next  AGI:  At1g20690.1    Description:  similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G20940.1); contains domain UNCHARACTERIZED (PTHR13711:SF8); contains domain SWI/SNF-RELATED CHROMATIN BINDING PROTEIN (PTHR13711) Range:  from: 7174428    to: 7176367    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g20693.1    Description:  HMGB2 (HIGH MOBILITY GROUP B 2); transcription factor. similar to HMGB3 (HIGH MOBILITY GROUP B 3) [Arabidopsis thaliana] (TAIR:AT1G20696.3); similar to HMGB3 (HIGH MOBILITY GROUP B 3), transcription factor [Arabidopsis thaliana] (TAIR:AT1G20696.1); similar to unknown [Populus trichocarpa] (GB:ABK95882.1); contains InterPro domain High mobility group box, HMG1/HMG2, subgroup; (InterPro:IPR000135); contains InterPro domain High mobility group box, HMG1/HMG2; (InterPro:IPR000910); contains InterPro domain High mobility group box, HMG (InterPro:IPR009071) Range:  from: 7176765    to: 7178810    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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