Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 ------->PIF5                <---------ANAC58               <---------MYB46(3)        <---------ANAC46       <-------PIF5     <---------DEAR3(1)     <---------ANAC46    --------->ATERF1(1)     <---------ANAC58    <---------At4g35610     <---------ANAC58    --------->ZAT2     --------->ZAT2    <---------ZAT2     --------->At4g35610    --------->At4g35610<---------ZAT2   <---------RAP2.3(1) ----------->RAV1(2)  <---------RRTF1(2)   <---------At4g35610                                               --------->ALFIN1  <---------ANAC58    ------>NtERF2                                                   <---------AtMYB61  <---------ANAC58   --------->ATERF1(2)                             --------------------->WRI1  <---------RAP2.6(2)<-----------RAV1(2)                          ------>ZmHOX2a(2)  <------NtERF2  <---------RAP2.3(2)<---------ATERF1(2)                         <------ZmHOX2a(2)  --------->LBD16  <---------ANAC46  <------NtERF2                               <---------ARR14(2) --------->DEAR3(1) <---------LBD16<---------ANAC58                                --------->ARR14(2)<---------LBD16 --- -WRI1 <------NtERF2--------->ATERF1(1)                 <----------DOF2     --------->ARR11(3)    <--   gattgcggctgcgagtttgggtgccagctggctcgtggtgaagacgagagttggattactttgggcgatctgtttggagatttcgccggaggtgttgaga  7099300                     --------->ATERF1(1)                     <------NtERF2                    ------>NtERF2                  --------->RAP2.3(1)                  <------NtERF2                  --------->ATERF1(1)                  <---------ABI4(2)                 <---------RRTF1(1)                 <---------RAP2.3(1)                 <---------ERF1                 <---------ORA47(2)                 <---------RAP2.6(1)                 <---------ATERF1(1)                 ------>NtERF2                <---------RAP2.3(3)                <---------RAP2.3(2)                <---------DEAR3(1)             <---------bZIP60(1)             <---------O2             ----------->HVH21             --------->bZIP60(1)                                                             <------NtERF2          ----------->TGA1                                                                  ------>NtERF2          ----------->HVH21                                                                <---------DEAR3(1)        <---------MYB46(3)                                                                 --------->DEAR3(1)       <---------DEAR3(1)                                                                 --------->ATERF1(1)       <---------AtMYB61                                                                 <-----------HVH21       --------->ALFIN1                                                                  <---------ATERF1(1)      <-------GAMYB <---------ATERF1(1)                                                 <---------DEAR3(1)      <---------ABI4(1)         --------->MYB52(1)                                      <---------TGA1a      <------NtERF2--------->DEAR3(1)                                                   <---------O2     <---------MYB46(3)        ----------->HVH21                                        --------->TGA1a    <---------ANAC46<---------RAP2.3(1)                                                 --------->bZIP60(1)    <---------DEAR3(1)--------->DEAR3(1)                                                <---------bZIP60(1)    <---------DREB2C(2)        ----------->TGA1                                         <---------bZIP60(2)    <---------RAP2.6(2)------>NtERF2             <---------ANAC46                       --------->bZIP60(2)   <------NtERF2<---------RRTF1(3)              <---------LBD16                         --------->O2 <---------DEAR3(1)<---------DEAR3(1)         ----------->HVH21                     --------->SPL7 ------>ALFIN1 --------->ATERF1(1)<---------ANAC46                                 <------ZmHOX2a(1) ---------RAV1(1)<---------DEAR4(2)         --------->MYB52(1)               <------ZmHOX2a(1)   gtgttggcggtggtgacgacggcgccgagagacatgacggagaggcaaacgacgggaatgtagattgaatttggagagaggatgaggacgacgtcgcctc  7099400                                                                                       <---------ANAC58                                                                                       <---------DEAR3(1)                                                                                       <---------ANAC58                                       <---------WRKY12                                <---------ANAC46                                       <---------WRKY38(1)                            <------NtERF2                                      <------ZmHOX2a(2)                               --------->ATERF1(1)                                  ------>NtERF2                                  --------->ALFIN1                                 --------->ANAC58                               --------->LBD16                                 --------->ANAC58                               <-------PIF5                              ----------->HVH21                                 ------->PIF5                              --------->DEAR3(1)                             <---------ANAC46                             <---------------------WRI1                     <------NtERF2                             <---------At4g35610         ------>ZmHOX2a(2) ------>NtERF2 <------NtERF2                             --------->At4g35610        <------ZmHOX2a(2)  --------->ABI4(2)                           <---------WRKY38(1)        --------->GLK1(1)   <---------DEAR3(1)        <                           <---------WRKY12           <---------GLK1(1)   --------->ALFIN1         --              <---------YAB1 <------NtERF2         --------->LBD16 ---------->DOF2--------->REM1(2)<-  <---------ARR14(2)     <-----------HVH21--------->MYB46(3)    ----------->GT1<---------ANAC46    <-   ttcgtattccgacttcatgatatagacagtcagcgacgcgatcaacgactctccagagatcggagaaggttaagcggtggcccgtggaggcgtcgatgaa  7099500                 ==================================MYC_MYB                <---------MYB46(3)                 <---------ANAC46               <---------RAP2.6(2)               --------->MYB52(1)           <----------DOF2                      ----------->HVH21           ========================================bZIP_DOF         --------->LBD16                  <-----------HVH21         ------>NtERF2                   --------->TGA2(1)        <---------ANAC46                 --------->bZIP60(1)       <------NtERF2                     <---------TGA2(1)       --------->ATERF1(1)               <---------bZIP60(2)      ------>NtERF2                      <---------bZIP60(1)     <---------PCF2                      --------->TGA1a    --------->ATERF1(1)                  <---------TGA1a   <---------MYB46(3)                    <---------ANAC46   --------->ABI4(2)                     <---------ANAC55(2)   <---------ATERF1(1)                   --------->O2        --------->LBD16  <---------DEAR3(1)                     <---------O2       <---------ANAC58  <---------AtMYB61                      >>>>>>>>>>HY5--------->ARR14(2)  --------->ALFIN1                     <---------TGA2(2)    <---------ANAC46 <---------ABI4(1)           <---------YAB1   --------->ANAC58 <------NtERF2 <---------ANAC46       ----------->TGA1<---------ARR14(2) ==================================================MYC_MYB  <---------ANAC58 <-------GAMYB <---------ANAC58       ----------->HVH21    <---------LBD16 ---------DEAR4(2)         --------->CCA1(2)---------->DOF2<<<<<<<<<E2Fc ------->ALFIN1<---------ANAC58---------->DOF2--------->ANAC58<------NtERF2      <---------ANAC58 --------DEAR3(1)<-------GAMYB ====================bZIP_DOF<<<<<<<<<E2Fd         <---------ANAC58 --------DREB2C(2)    <---------At4g35610==============bZIP_DOF      --------->ICU4               <--   ggcggtggtgccgcgttgcggttgagatgatatgaaagttgtgacgtcaagcgacggatttggcgggagacataatgggtttcgcttgctatagaatgta  7099600                                                     --------->ANAC46                                                     --------->ANAC58                                                     --------->ANAC58                                                     --------->ANAC55(2)                                                   --------->ARR14(1)                                                   --------->CCA1(2)                                        ================HOX2a_HOX2a                                       <---------GLK1(1)                                       <------ZmHOX2a(2)                                       --------->GLK1(1)                           <------ZmHOX2a(2)      --------->ARR11(1)                           =============================HOX2a_HOX2a                         <------ZmHOX2a(1)        --------->ARR14(2)                         ======================HOX2a_HOX2a                         =====================HOX2a_HOX2a                      --------->HSFC1(1)------>ZmHOX2a(2)                      --------->HSFB2a(2)         <---------ARR14(2)             <---------HSFB2a(2)                      <---------HSFB2a(2)      <---------TOE1(2)           --------->ARR11(3)             <---------ARR14(2)        =================HOX2a_HOX2a        <-----------ARR10             --------->ARR14(2)       --------->ARR11(3)                   <---------ARR11(3)   --------->ATHB12<----------DOF2    <---------ARR11(3)       --------->TOE2(3) --------->HSFB2a(2) -------ZAT6<---------ARR14(2)     --------->YAB1<------ZmHOX2a(1)       ------->TEIL*TSS   gagtttgatttgcagaaaccgcttctaggatcaacaatgagatctctctcaggatacgccatatttcttaatatgaagctcttctctaagtacaacttct  7099700                                                                      <---------AHL20(2)                                                             <---------ANAC46                                     <-----------GT1         --------->ETT(1)                               --------->AHL20(2)         <-----------RAV1(1)  ----------->GT1     --                               <---------AHL20(2)         --------->ALFIN1  <---------ANAC46     <---                               <---------YAB1             ----------->HVH21 <---------REM1(1)    <---                  <---------YAB1 --------->AHL20(2)      <-------MYC3<---------AHL20(2)          <---           ----------->GT1    --------->TOE2(3)          ------->MYC3--------->AHL20(2) --------->YAB1   --------->ATHB12  ------->TEIL<---------AHL20(2)--------->REM1(1)<---------YAB1     <---------YAB1   ctaaacgattagtctgtaatatgaatatgaaatattaatataccatactatctacaacatgtgtcggattattaaatgatgtagataatatgatagttga  7099800                                                                                                 <---        --------->ANAC46                                                                         <---    ----------->RAV1(1)                                                                          <---    <---------RAP2.6(3)                                                                         -----    ------>NtERF2                                                                               -----   <---------ETT(1)                                                                     <-----------GT1   --------->RAP2.6(2)                                                                  --------->YAB1   ----------->HVH21                          -------->HAHB4        <---------YAB1  <---------AHL20(2) ------->ALFIN1                               --------->YAB1     <----------DOF2 <---------ARR11(3) ------bZIP60(2)                             <---------YAB1   --------->ARR11(3) <---------AHL20(1) ------REM1(1)           <---------YAB1    --------->YAB1 ---------->DOF2        --------->ARR11(3) --------RAV1(1) --------->YAB1          --------->AHL20(2)   <---------ARR11(3) --------->AHL20(1)   tgtggccgacacaaaacaataagaattgtgatgagaaacacaaaataataatacaaaacataaagaacttttcattgtaagaatattttatcacaagttt  7099900                                                           --------->DEAR3(1)                                                           <---------ANAC58                                                           <---------ANAC58                                                          --------->ATERF1(1)                                                          <------NtERF2                                                       --------->RRTF1(1)                                                       --------->RAP2.6(1)                                                       --------->DEAR4(2)                                                       --------->ERF1        ------->MYC2                                   --------->ORA47(2)        ------->PIF5                                   --------->RAP2.3(1)        <-------PIF5                                   --------->ATERF1(1)        <-------MYC2                                  <---------RAP2.3(1)        <-------MYC3                                  <---------ATERF1(1)        ------->MYC3                                  ------>NtERF2       <---------ANAC55(2)             --------->GLK1(2) --------->ABI4(1)       --------->ANAC55(2)             --------->ARR14(1)------>NtERF2       ================================MYC_MYB       <---------DEAR3(1)       --------->O2                   --------->ARR11(1)<---------DEAR3(1)       <---------ANAC46               --------->ARR14(2)--------->DEAR3(1)       <---------O2                  --------->HSFB2a(1)--------->RRTF1(3)       --------->TGA1a               <---------HSFB2a(1)--------->RAP2.3(3)       <---------bZIP60(2)          ----------->ARR10--------->DEAR3(1)       <---------TGA1a            --------->LBD16  <-----------HVH21     <-------------DYT1          --------->LBD16   <---------ATERF1(1)    ----------->HVH21           <---------LBD16<-----------GT1   <-----------HVH21           <---------LBD16----------->HVH21 <---------MYB59  --------->bZIP60(1)         -------->P<-------TEIL--------->ATERF1(1)  <---------bZIP60(1)         --------->MYB52(1)<---------At5g28300 ------ANAC46               <---------MYB52(2)--------->WRKY38(1)  -------->P              ========== ---MYB46(1)          --------->LBD16<---------HSFC1(2)<------NtERF2                       <--------- ---MYB83--------->ALFIN1   --------->MYB46(3)--------->WRKY12  <---------MYB46(2)        <---------ANAC58 ---->MYB46(2)        ------>ZmHOX2a(1)--------->CCA1(2)--------->ANAC46                  <---------ANAC58 ---->MYB111(2)      --------->TOE1(2)<---------ARR14(2)--------->RAP2.3(2)         <-----------RAV1(1)   ggtgaagtcacgtggttctcgttcctgagaactaccgggagattcgatttgaccgtcgccgccgtgcctaacccctatgttttgttttgttggcttctat  7100000                      <---------AHL20(2)                  <---------RVE1(1)                  <---------CCA1(1)                 <---------ARR11(3)                 --------->ARR11(3)           <---------TGA1a           <---------ANAC55(1)           <---------ANAC58           <---------ANAC58           --------->ANAC55(2)                                            --------->O2           <---------ANAC46                                               --------->ANAC46           --------->O2                                           ---------->DOF2           <---------bZIP60(1)                                 --------->TOE2(3)           --------->bZIP60(1)                                 --------->TOE1(3)           <---------bZIP60(2)                           <------MYB83     --------->TGA1a           --------->TGA1a                               <---------ANAC55(2)--------->ZAT14           <---------O2<---------AHL20(2)                <------MYB46(1)<---------ALFIN1           <---------ANAC55(2)                           --------->ANAC55(2)<---------ZAT14          ----------->STF1                              --------->MYB59<---------ZAT18         <---------TGA2(2)                          <------ZmHOX2a(1)  --------->ZAT18 ====================bZIP_DOF                    <---------LBD16  ==================bZIP_DOF -DOF2  ----------->TGA1              ----------->HVH21 --------->MYB46(2)--------->bZIP60(2) ------>ZmHOX2a(1)   gttcagtttgatgacgtgagattttttatttgggtaaccagtgacccataaccaggattaggtaacctcaaagcccacttcacttgccatattgtccttg  7100100                 <---------AHL20(2)              ------>MYB83              ------>MYB46(1)           --------->ANAC46           --------->ANAC58           --------->ANAC58         --------->ANAC46         --------->ANAC58         --------->ANAC58                                         <----------DOF2       --------->ANAC58                                           xxxxxxxxxxxxxxxx>smallRNA(i)       --------->ANAC58                               ------>ZmHOX2a(2)             <-------GAMYB       <---------ALFIN1   <-----------RAV1(1)        <------ZmHOX2a(2)             ----------->GT1  --------->ANAC58 <-----------GT1                  <---------ARR14(2)    <----------DOF2  --------->ANAC58<-----------GT1                   --------->ARR14(2)<----------DOF2       ---------   ggtctagccacacaccaaatttatcttcttgttgctcaaatccaaaccaattccgatcgtccatccctctttctttctttttcttcggttaaaaacttaa  7100200  Previous    Next  AGI:  At1g20490.1    Description:  AMP-dependent synthetase and ligase family protein. Identical to 4-coumarate--CoA ligase-like 3 (4CLL3) [Arabidopsis Thaliana] (GB:Q3E6Y4;GB:Q9LMV7); similar to 4-coumarate--CoA ligase family / 4-coumaroyl-CoA synthase family [Arabidopsis thaliana] (TAIR:AT1G20500.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62012.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) Range:  from: 7097283    to: 7099685    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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