Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              <------NtERF2                                                                                           <---------RAP2.3(1)                                                                                           ------>NtERF2                                                            --------->ALFIN1              <---------ANAC46                                                          <---------ANAC58               --------->ZAT18                                                          <---------TGA1a              <---------WOX13(1)      <---------REM1(1)                                   <---------ANAC46           <---------ICU4    <---------ANAC46                                      ==============================MYC_MYB   --------->ALFIN1                                       --------->TGA1a            --------->ATHB12  <-------MYC2                                            <---------ANAC58          <---------YAB1  <-------MYC3                     --------->ARR14(2)  ----------->HVH21        <-------GAMYB--------  ------->MYC2                     <---------ARR14(2)  <---------SPL7          <---------MYB46(3)  ------->MYC3                    <---------CCA1(2) <-----------HVH21          --------->MYB55(2)   < --------AtLEC2             <---------ARR14(2)     <---------ANAC58           <---------AtMYB61  ---- --------ANAC58             --------->ARR14(2)     <---------ANAC58           --------->ALFIN1------>NtERF2 --------ANAC58      <------ZmHOX2a(1)         --------->ARR11(3)  ------>ZmHOX2a(2)--------->ICU4  -   tgcatgtggtgaaggcgagaacaggacgcgaatcgcctatctgtttggagatttcgtcggacgtgttgatcggattagcggtggttatgattgcgccgag  7096700                                                                                   <---------ANAC58                                                                                   <---------ANAC58                                                                      <---------ANAC46                                                                      <---------ANAC58            ---                                                                      <---------ANAC58           ----                      --------->HSFB2a(2)               --------->ETT(2)           <---------ANAC46--                      <---------HSFB2a(2)               --------->TGA2(1)      ------>MYB46(1)  -----     <---------ANAC46------>ZmHOX2a(2)                  <---------TGA2(1)      ------>MYB83     -----     <---------ANAC55(2)      <------ZmHOX2a(1)         <---------bZIP60(1) --------->ANAC55(1) -----    <---------LBD16  ================HOX2a_HOX2a        <---------ETT(2) --------->SPL7        ------   --------->MYB52(1)<---------LBD16                    --------->bZIP60(1) --------->ANAC46   <----- ->DEAR3(1)         <------ZmHOX2a(2)                  ----------->STF1<---------ZAT18---------->DOF2 ---------bZIP60(1) =================HOX2a_HOX2a     ----------->TGA1--------------->AtSPL3    ------ ------->HVH21     <---------ARR14(2)              --------->YAB1    --------------->AtSPL8  -------- -------->bZIP60(1)--------->ARR14(2)         ----------->GT1     <----------DOF2  <---------ANAC55(2)   tgacattacggagagggagacgatcgggaagaggattgagtttggagagagtataatgacgacatttcctttgcgtacacctaatgcgtaaagacaaccc  7096800                                                          --------->DEAR3(1)                                                          <---------DEAR3(1)                                                         <------NtERF2                                                        <-----------HVH21                                                        <---------ATERF1(1)                                                       <---------ANAC46                                                       --------->DEAR3(1)                                                 <---------ARR14(2)                                                 ----------->HVH21                                                 --------->ARR14(2)                                                <-----------HVH21               ===================== -------->HVH21                 <---------HSFC1(2)     <---------DEAR3(1)       ===================== ----->LBD16                    --------->At4g35610  <---------RAP2.3(1)        <----------CDC5 ---->NtERF2                    <---------At4g35610 <---------RAP2.6(2)      ------>NtERF2 ---->ANAC46          <---------ZAT2       <---------SPL7--------->ATERF1(1) --------->LBD16 ---->ANAC58          <---------At4g35610  ------>NtERF2------>NtERF2      <---------LBD16 ---->ANAC58          --------->ZAT2      --------->DEAR3(1)              <---------At5g28300 --->TOE1(2)          --------->At4g35610 --------->MYB46(3)          <---------ARR14(2)           == ----LBD16   --------->DEAR3(1) --------->HSFC1(2) <---------At5g28300--------->ARR14(2)           -- ->GAMYB   ------>NtERF2 <---------LBD16  ----------->HVH21     --------->ARR14(2)                 == >P    <---------ETT(2)  <-----------RAV1(2)--------->MYB52(1)  <---------ARR14(2)               <---   gcgactctttcgacaccgagccagagctcagggaagcttagtcgacgaccggttacggcgtcgacgaatacggttttgccgcgatgaggctgtgatgcaa  7096900             --------->HSFB2a(2)         <---------ANAC46         --------->O2         <---------O2         <---------bZIP60(2)         <---------bZIP60(1)         --------->TGA1a         --------->bZIP60(1)         <---------TGA1a       <---------TGA2(2)      ----------->TGA1      ----------->HVH21     <-----------HVH21    <---------TGA1a    --------->TGA1a    <---------O2    --------->O2    <---------ANAC58    <---------ANAC55(2)       <------NtERF2    <---------ANAC58         --------->LBD16        --------->At4g35610    --------->ANAC55(2)     <---------ANAC58       --------->MYB52(2)                             --- ==================MYC_MYB  <---------ANAC46   <---------O2                            <----------DOF2 =============MYC_MYB       <---------ANAC58   --------->O2                      <---------ARR14(2) - ==================bZIP_DOF<<<<<<<<<E2Fc       ===================================================bZIP_DOF -------->DOF2             <<<<<<<<<E2Fd       <---------TGA1a                   --------->ARR14(2)-- =============bZIP_DOF     <---------LBD16     --------->TGA1a                  <---------ARR14(2)<-- ------ATHB12<---------HSFB2a(2)     --------->ATHB12                 <---------YAB1   <---------DAG2   tgaaagacgtgacgtcgagaaattggtttggcgggagagccattggctcacgtttgctgtagaatatcgatgttgattcgcagaaaccgctttttcgatc  7097000                                          ------>NtERF2                                         --------->DEAR3(1)                                         --------->ANAC46                                       <---------ATERF1(1)                                      ----------->HVH21                                      --------->ETT(2)                                      --------->WRKY12                                      <---------ETT(2)                                      --------->DEAR3(1)                                      <---------DEAR3(1)                                     <------NtERF2                                     --------->ATERF1(1)                                    <---------ATERF1(1)                                    ------>NtERF2                                    <-----------HVH21                                   --------->DEAR3(1)                                  --------->ATERF1(1)                                  --------->RAP2.3(1)                                  <------NtERF2                                 ------>NtERF2                                 <---------ATERF1(1)                                 <---------RAP2.3(1)                                --------->DEAR3(1)                                <---------DEAR3(1)                               <------NtERF2--------->DEAR3(1)                               --------->ATERF1(1)                              <---------ATERF1(1)                              <-----------HVH21                             --------->bZIP60(1)      ------->GAMYB                             <---------ANAC58         --------->DEAR3(1)                             <---------ANAC58         --------->RAP2.6(2)                             <---------O2<---------DEAR3(1)                             --------->DEAR3(1)       --------->ANAC46                              <                             --------->ATERF1(2)     --------->MYB46(3)                             <                             <---------ATERF1(2)    <---------At5g28300                            <-                            --------->ATERF1(1)    --------->MYB52(1)                           <----       --------->GLK1(1)   <---------ATERF1(1)   <----------DOF2          <-------GAMYB         ----- ------>NtERF2             ------>NtERF2--------->ATERF1(1)              <---------MYB46(3)   ------- ----->P   --------->HSFB2a(2)------>NtERF2 <---------ANAC46          <----------DOF2--------->ANAC58 ------>GAMYB             --------->DEAR3(1)<---------ANAC58          --------------------->WRI1----- ------->MYB46(3)       <---------At4g35610 <---------ANAC58       <------ZmHOX2a(1) --------->ANAC58 -------At5g28300       --------->At4g35610<------NtERF2       ---------->DOF2     ---------->DOF2<--   taccgccagagttctcgattcgatttcgctgccgtcgccgtcgacgccgtgcttaaccgccatgttaaaggactttggttgtatcgaaagcctctcggtg  7097100                                                           <---------AHL20(2)                                                   --------->ZAT18                                                   --------->WRKY38(1)    *TSS   <------------CBF                     <---------ANAC58    <-------GAMYB     --------->ANAC55(2)       =============================bZIP_DOF   <---------MYB46(3) <---------ANAC58          <---------ANAC58 ------MYB46(1)       <---------ANAC58          --------->O2 ------MYB83          <---------ANAC55(2)       <---------ANAC46       --------->ZAT18 --------AtMYB61    <-----------GT1             <---------bZIP60(2)    <---------ZAT18 -----MYB46(3)<------MYB83                      <---------TGA1a   ---------->DOF2 ---->ATHB12<---------WOX13(1)                  <---------O2--------->YAB1 -->At5g28300 ----------->GT1                ----------->TGA1 ----------->TBP   <----------DOF2     - ---->MYB55(2)<------MYB46(1)         <---------TOE2(3)    <---------YAB1   <---------ZAT14         - -------WOX13(1) <---------ICU4<---------YAB1----------->HVH21<---------YAB1--------->ZAT14   ------>ZmHOX2a(2)   attggtcgttagagattggtaattacgtcgtttctgatttaagttttatgacgtggactatattataaaaaagcccactatactttgagtctttgatcca  7097200                                                                                         <---------YAB1                                                                                       <--------ATHB1                                                                                       <---------ICU4                                                                                       --------->YAB1                                                                                       --------->ATHB12                                                                                      --------->ICU4                                     ------>ZmHOX2a(1)                                <---------YAB1                             <-----------GT1                                  --------->ARR11(3)                            <---------CCA1(2)                                 --------->AHL20(1)   <-    <----------DOF2       --------->YAB1            --------->ZAT6            <---------ARR11(3)  <-- -------->ANAC58          <---------AHL20(2)--------->ICU4                   --------->AHL20(2)------ -------->ANAC58          --------->AHL20(2)<---------ATHB51          ----------->GT1 <---------ATHB12   ttacgcctttgggcctaatgcaaactaattatatctgtccttggaaattattcaacactatacatatgtatacagaaaaatatatacaatgattacagat  7097300                                                                                                    <                                                                                                   --                                             ---------->DOF2                                      <--                                           <---------YAB1                                        <---                                           <---------TOE2(3)                                     <---                                     --------->AHL20(2)                                          ----                                     <---------AHL20(2)                                          ----                                    --------->AHL20(2)                                          <---- --------At5g28300                  <---------AHL20(2)           ------>ZmHOX2a(1)             ------ ---------GT1                       <---------AHL20(1)       <-----------GT1               --------->ATHB12 --->ARR14(2)                       --------->YAB1          <-----------GT1               <---------YAB1   ttacagttttctctcttattgaaaaacaataccatcaataaaattaagaaagtctagcaaatttatcctttcaaagtttggaagttgatagtttgattag  7097400                                                                                 ------->PIF5                                                                                 <-------PIF5                                                                                ----------->RAV1(2)                                                                                <---------At4g35610                                                                                <---------ZAT2 ----------DOF2                                                                ------>NtERF2 ---->ZmHOX2a(2)                                                              <---------ALFIN1      - ----ZmHOX2a(2)                                                              <------NtERF2    <------ ------ARR11(3)                                                              --------->ATERF1(1)   <- ------AGP1                                                                 --------->ABI4(2) ------- ----->AGP1       <---------SPL7                      <---------DAG2        <---------ATERF1(1)   <-- ----->ARR11(3)   --------->LBD16              ------->TEIL                 ------>NtERF2    <------- -----CCA1(2)    <---------ANAC46           <---------YAB1              --------->ANAC46     <------- ----->ARR10    <---------LBD16          --------->ICU4         <---------AHL20(2)           --------   atctttgcgaagtgttttgccggatgcagtctttggtatggaacttatgaatgcaacctttcttattttcttatacggtgccacctgctcatcaaattat  7097500         --------->YAB1    --------->MYB46(3)    ----------------->AGL3   --------->ANAC58   --------->ANAC58   --------->ANAC46   ------>MYB83   ------>MYB46(1) -------->MYB46(3)                                   <---------------AtSPL3   ------->TEIL ---AHL20(2)                                      --------->ARR11(3)      --------------->AtSPL8 --------At5g28300                                <---------ARR11(3)<---------YAB1--------->ATHB12 -->AHL20(2)                               ---------->DOF2       <---------YAB1 <---------MYB59 ---------GT1                           --------->YAB1   <---------TOE1(2)--------------->AtSPL3 --AHL20(1)         <----------DOF2    <---------YAB1<---------------AtSPL8   --------->MYB52(1) --AHL20(2)      <-----------GT1    --------->AHL20(1)   ------->TEIL     <---------------AtSPL8 ->AHL20(2) ----------->GT1         <---------ARR11(3) <---------SPL7  <---------HSFB2a(2)   ttaccacccaaaaatagtttaacttttaagtaaaacaatatatgataaagaagatgttgtacgttttgtgattatagaagtacctgattagagatgaagt  7097600  Previous    Next  AGI:  At1g20480.1    Description:  4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein. Identical to 4-coumarate--CoA ligase-like 2 (4CLL2) [Arabidopsis Thaliana] (GB:Q84P25;GB:Q9LMV7); similar to OPCL1 (OPC-8:0 COA LIGASE1), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT1G20510.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74074.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62011.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) Range:  from: 7094823    to: 7097104    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g20490.1    Description:  AMP-dependent synthetase and ligase family protein. Identical to 4-coumarate--CoA ligase-like 3 (4CLL3) [Arabidopsis Thaliana] (GB:Q3E6Y4;GB:Q9LMV7); similar to 4-coumarate--CoA ligase family / 4-coumaroyl-CoA synthase family [Arabidopsis thaliana] (TAIR:AT1G20500.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62012.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) Range:  from: 7097283    to: 7099685    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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