AthaMap

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Position

Exon region

Intron region

UTR region

AGI

% Restriction to highly conserved TF binding sites (0-100)

1 10 20 30 40 50 60 70 80 90 100
<-----------GT1 -------->ARR14(2) ---------ARR14(2) <---------MYB59 <---------GLK1(2) -------->GLK1(2) --------->TOE1(3) --------->At4g35610 --------GLK1(2) --------->MYB52(1) --------->ARR14(2) ---->HSFB2a(2) ----------->GT1 --------->TOE2(3)<---------ARR14(2) <------ -----HSFB2a(2) <----------DOF2 --------->MYB52(1) <---------GLK1(2)--------->GLK1(2)
agaatccgatttcaccagctcttttttgacatcggaaaaaacgaactgcaatatacctaaacaaacaatgcagattgtggaacagctagattccgatgca	7082100
<---------ZAT14 --------->LBD16 --------->ZAT14 <---------At4g35610 ----------->RAV1(2) ---------- --------->ZAT2 --------->YAB1 <---------ARR14(2) ------>MYB46(1) --------->LBD16 <---------ANAC46 ------>MYB83 --------->YAB1 <---------ZAT2 --------->GLK1(1) <---------ICU4 --------->At4g35610 ---------->DOF2 --------->MYB52(1) --------->YAB1 <-----------RAV1(2) --------->YAB1 --------->ARR14(2) <-------TEIL --------->ARR14(2) --------->MYB52(1) <---------ARR14(2) ---ZAT18 <---------LBD16 <---------LBD16 --------->RVE1(1) ----------->HVH21 <--
ctagtttcatcatcaccggatttgagccagctgcgcagagttgaagtcgagactgatgaaatatcggaatcaaaagcctcgacggataccaatcggaaaa	7082200
--- <-- <--- --------->AHL20(2) ---- --------->AHL20(1) <------- --------->ALFIN1 <---------AHL20(2) <---------ARR14(2) ------>MYB46(1) --------->AHL20(2) --------->GLK1(2) --------->MYB52(1) <---------AHL20(2) --------->LBD16 < ------>MYB83 --------->ANAC46 --------->ARR14(2) ----------->GT1 -- ->GT1 ----------->HVH21 --------->ANAC58 <---------ARR14(2)<---------At4g35610 -----TEIL <---------MYB59 --------->ANAC58 <---------HSFB2a(2) ---------->DOF2 --------->ARR14(2)
tacatctctcacagacctaacagagtggagacacacggacttaattaaattacagaagaaaaatcgaattctcaaagagattgaagcggagaatatgtca	7082300
<---------ALFIN1 <---------ABI4(2) --------->ZAT2 <---------ZAT2 <---------ZAT14 --------->ZAT14 --------->ANAC46 <-----------HVH21 <------ZmHOX2a(2) <---------ARR14(2) --------->ARR14(3) < <---------ANAC55(2) <---------ARR14(3) - ------>ARR14(2) --------->ARR14(2) <--- -------ARR14(2) --------->ARR11(3) <--- ------At4g35610 --------->LBD16 <----------DOF2 <---------At4g35610 ----->At4g35610 ------->TEIL <---------AGP1 <---------ZAT2 ----HVH21 --------->CCA1(2) <---------ARR11(3) <------ZmHOX2a(2) -------TEIL --------->CCA1(2)--------->LBD16 ------>ZmHOX2a(2) --------->GLK1(1) ------->CCA1(2) --------->TOE1(2) <---------MYB52(2)----------->ARR10 <---------MYB52(1) <---
gatacataaaccctaagaacgtgagagtaagagataagaaaacgaaccccgagagagagaagatctttcacagcaccggtatgcagagatcgagctgttt	7082400
<------NtERF2 --------->ATERF1(1) ------>NtERF2 --------->DEAR3(1) <---------At4g35610 <---------ZAT2 <---------ATERF1(1) --------->At4g35610 --------->O2 ------>NtERF2 ----------->HVH21 <---------O2 <---------ATERF1(2) <---------ANAC46 --------->ATERF1(2) --------->DEAR3(1) <---------DEAR3(1) <---------ANAC58 <---------RAP2.6(2) <----------DOF2 <---------ANAC58 --------->RAP2.6(3)<---------ANAC46 <------NtERF2 <---------ZAT2 <------NtERF2 ------>NtERF2 --------->ZAT2 --------->ATERF1(1) --------->ANAC46 --------->ANAC58 --------->RAP2.3(1) --------->ANAC46 --------->ANAC58 ------>NtERF2 ---------ARR14(2) --------->ALFIN1 <---------ATERF1(1) <---------At4g35610 -------->ARR14(2) <---------At5g28300 <---------MYB52(1) <---------RAP2.3(1) --------->LBD16 ------ANAC46 <---------ANAC58 <-------GAMYB <------NtERF2 <---------DEAR3(1) ----------->HVH21 ------ANAC58 <---------ANAC58 <---------SPL7 <---------DEAR3(1) --------->DEAR3(1) ------ANAC58 <---------ANAC46 <---------MYB46(3) ----------->HVH21 <---------LBD16
cgtatacgcgccgtgtcttggagttaccatgacttactaggccgttgggcaagccggctgattcgacggcgacgggttctttttcgccggacatctgttt	7082500
--------->DAG2 ---------->DOF2 <---------------AGL15 <---------ZAT2 ----------------->AG <---------At4g35610 <-----------------AG <---------RAP2.6(2) <---------ZAT18 ----------------->AGL3 ---------->DOF2 --------->ZAT14 <-----------------AGL3 <------ZmHOX2a(1) <---------ICU4 <-----------------AGL2 <--------ATHB1 <---------ATHB12 ----------------->AGL2 --------->ATHB12 --------->ANAC58 <---------ANAC58 - <---------ICU4 --------->ANAC58 <---------DAG2 ----------------->AGL1 --------->ATHB51 --------->WOX13(1) <----------DOF2 --------------->AGL15 <---------AHL20(2) --------->YAB1 ------------>CBF <-----------GT1 <-----------------AGL1 <---------ATHB51 <---------ANAC46 *TSS <---------ZAT14 <---------TOE2(3) <---------ANAC58 <---
tgaataattggaggaaagcggcttctatcaaattagtagcaatcaatgcagtgagcttgttaagtttttgacttttttttctcgtgccaaaaaaggctaa	7082600
xxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxx <---------YAB1 xxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxx>smallRNA(fl3) <---------ZAT6 xxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <------MYB83 ----------->ARR10 <------MYB46(1) <----------DOF2 xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxx>smallRNA(si3) --------->MYB59 <---------GLK1(2) <---------AtMYB61 xxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <---------MYB55(1) xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------MYB52(1) xxxxxxxxxxxxxxxxxxxxx <-------GAMYB xxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxx xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxx xxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->ALFIN1 xxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxx xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxx xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxx xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxx xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxx xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(i) <---------MYB46(3) <----------DOF2 xxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxx xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxx <---------YAB1 xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxx --------->AHL20(2) xxxxxxxxxxxxxxxx>smallRNA(si3)<---------ANAC58 --------->AHL20(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxx --------->AHL20(1) xxxxxxxxxxxxxxxx>smallRNA(se3)<---------ANAC58 --------->AHL20(2) *TSSxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------AHL20(1) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<-------- ----------->GT1 xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<-------- <-------MYC3 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxx ------->MYC2 xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <-------MYC2 xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) x <-------MYC4 xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxx ------->MYC3 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxx <---------ALFIN1 xxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxx <---------At4g35610 ---------->DOF2 xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)-- --------->At4g35610 <---------AHL20(2) <---------YAB1 <---------ANAC58 xxxxxxxxxxxxxxxxx>smallRNA(se3) ------>TEIL <---------AHL20(2) ----------->GT1 <---------ANAC58 xxxxxxxxxxxxxxxxxx>smallRNA(se3) ------ATHB12 --------->AHL20(2) <---------ZAT6 <---------ANAC46 xxxxxxxxxxxxxxxx>smallRNA(s)
tgaagctgcacatgttaaaatattatatgaactattttagagttaatatagcaaagagggcgtttggtctagtggtatgattctcgctttgggtgcgaga	7082700
--------->HSFB2a(2) xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxx>smallRNA(fl3) --------->LBD16 xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) --------->LBD16 xxxxx>smallRNA(se3)--------->ANAC58 xxxxx>smallRNA(fl3)--------->ANAC58 xxxxx>smallRNA(i2)--------->SPL7 xxxxxxxx>smallRNA(se3) xxxxxxxxx>smallRNA(le3) x>smallRNA(i2)--------->ANAC46 xxxxxxxxxx>smallRNA(le3) xxxxxxxxxxx>smallRNA(le3) xxxxxx>smallRNA(se3) xxxxxxxxx>smallRNA(le3) xxxxxxxxx>smallRNA(si3) xxxxxxxx>smallRNA(le3) xxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) x>smallRNA(s)<---------HSFB2a(2) xxxxxxxxx>smallRNA(s) xxxxxxxxx>smallRNA(si3) xxxxxxxxxxx>smallRNA(le3) xxxxxxxx>smallRNA(s) --------->ZAT18 xxxxxxxxxx>smallRNA(si3) <---------ZAT18 -ANAC58 <---------GLK1(2) --------->ZAT18 -ANAC58 xxxxxxxxxxxxxxxxxxx>smallRNA(l2) --------->ZAT14 xxxxxxxxx>smallRNA(si3) <---------ZAT18 xxxxxxxxxxxxxxxxx>smallRNA(se3) <---------ZAT14 xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <---------ANAC58 xxxxxxxx>smallRNA(se3) <-----------GT1 <---------ANAC46 <---------ANAC46 xxxxxxx>smallRNA(s2) <----------DOF2 <---------AtLEC2 <---------ANAC58 ------->PCF5 <---------LBD16 <---------DAG2 <---------MYB46(3) <-------TEIL --------->ANAC46
ggtcccgagttcgattctcggaacgcccctcttacttttttgttattttcaagacgttgttggcatggattatatgttcgtctcgtgcacactatgtaat	7082800
<-------TEIL ------>ZmHOX2a(2) <------ZmHOX2a(2) <<<<<<<<<<<<<<<<<LFY ----------->HVH21 --------->ARR11(3) --------->ANAC55(2) <---------ARR11(3) <----------DOF2 --------->ARR14(2) --------------->AGL15 <---------------AGL15 --------->DOF5.7(2) ========================================================MADS_MADS <-------- <---------YAB1 <---------ARR14(2)--------->RVE1(1) --------->AHL20(2) <---------AHL20(2) <---------MYB46(3) --------->GLK1(2) <-----------GT1
agtataatctcttccattttatgcttttatatgtaacagtggatccatcgtttacaaaaatctctgtatatagataacaatgaaatcacattataaaatt	7082900
<---------ANAC58 --------->ANAC58 --------->ANAC55(1) <---------ANAC55(1) --------->ANAC46 <---------ANAC55(2) --------->ANAC55(2) ----- <---------ANAC58 <-----------GT1 --------->ZAT6 <---------ICU4 <-----------GT1 <---------ATHB12 -------->P ------ --------->YAB1 --------->ZAT2 <---------AHL20(2) ------>MYB83 <------ --------->ATHB12 <---------At4g35610 --------->AHL20(2) ------>MYB46(1) <--------HAHB4 --------->At4g35610 --------->ANAC46 -------->ATHB1 ----------->RAV1(1) -------->ATHB1 --------->ANAC46 --------->ANAC58 --------->ATHB12 --------->AtMYB61 <---------ATHB12 <---------ZAT2 --------->ANAC58 <---------ICU4 --------->MYB46(3) -AHL20(2) --------->ANAC58 --------->AHL20(2) --------->YAB1 <---------ICU4 <---------TOE2(3)
gagttgaatcattacgtaacacactcagctcaatttaacttatggctacgaaacaatattaaatcattgaattcattactcaccaacactaatgtaacgt	7083000

AGI:	At1g20410.1
Description:	similar to unnamed protein product [Vitis vinifera] (GB:CAO61996.1); contains domain UNCHARACTERIZED (PTHR21568); contains domain Pseudouridine synthase (SSF55120)
Range:	from: 7078888	to: 7082537	Orientation: Reverse
Links:	TAIR MIPS

AGI:	At1g20420.1
Description:	pre-tRNA. tRNA-Pro (anticodon: TGG)
Range:	from: 7082658	to: 7082729	Orientation: Forward
Links:	TAIR MIPS

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