Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   ------->GAMYB                                                 =============MYC_MYB                                           --------->DEAR3(1)                                          --------->ANAC58                                          --------->ANAC58                                      <-----------HVH21                                      <---------DDF1                                      <---------ATERF1(1)                                      ------>NtERF2 <---------O2                                     --------->RAP2.3(3)                                     --------->RRTF1(2)                                     --------->DREB2C(2)                                     ----------->HVH21                                     --------->ANAC46                                     --------->DEAR4(1)                                     --------->RAP2.3(2)                                     --------->RRTF1(3)                                     --------->At1g77200       <----------DOF2                                     --------->RAP2.6(2)      ------>ZmHOX2a(2)                                     <---------ETT(1)        <------ZmHOX2a(2)                                     --------->DEAR3(1)      <---------RVE1(1)                                    --------->ERF1  --------->O2                                    --------->RAP2.3(1)     <---------ARR11(3)                                    --------->ORA47(2)      --------->ARR11(3)             ------>ZmHOX2a(2)                                   <---------ATERF1(1)      <---------ARR14(2)            <------ZmHOX2a(2)                                   <---------At4g35610      --------->ARR14(2)            --------->CCA1(2)            --------->At4g35610    --------->At4g35610     =================================HOX2a_HOX2a            <---------At4g35610   --------->DEAR3(1)======================bZIP_DOF       <---------ARR14(2) -------->ZAT2                   --------->DEAR3(2) --------->TGA1a                      <-----------ARR10 ---------At4g35610              --------->MYB46(3) <---------TGA1a                      --------->ARR14(2) ---------ZAT2                  --------->SPL7<---------ARR14(2)                         <---------ARR11(3) -------->At4g35610           <---------SPL7  --------->ARR14(2)                         <---------AGP1 ------->MYB52(2)             ----------->HVH21  ----------->HVH21                       --------->ARR11(3) ----->DOF5.7(2)            --------->At4g35610 --------->MYB46(3)    <-----------RAV1(2)--------->AGP1 ------MYB52(1)         --------->ANAC58 ------>NtERF2     <------ZmHOX2a(1)            <---------CCA1(2) ---->TOE1(3)           --------->ANAC58<---------ALFIN1--------->HSFB2a(2)    <---------ANAC46     < ---->TOE2(3)  <-------TEIL <---------At4g35610 --------->DEAR3(2) <-----------GT1   <------ZmHOX2a(2)   ttagctcgcgagtgagatgcaatcgctcgcatcggaccgccgacaccgcatccgacgtctaggatcttttgaccaggtttgacttggatcagatctacgg  7039700                         <----------DOF2                     <---------ANAC58                     <---------ANAC46                     <---------ANAC58                     <---------RAP2.6(2)                    <------NtERF2                  --------->ALFIN1                 <-------MYC2                 ------->MYC2                 ------->MYC3                 ------->PIF5                 <-------PIF5                <---------TGA1a                ====================bZIP_DOF                <---------ANAC58                <------NtERF2                <---------ANAC58                --------->ALFIN1                                                                   <-                <---------ANAC46                                                                   --               ------>NtERF2                                                                      ---              <---------ANAC58                                                                  -----              <---------ANAC58               <---------WOX13(1)                               <------              <---------ANAC46           --------->LBD16                                     <-------             <------NtERF2              --------->LBD16                                      <-------             --------->ATERF1(1)        <---------LBD16                                      <-------            ----------------->PIF3(1)  <---------ANAC46                                      <-------            <---------RAP2.3(1)        <---------LBD16                                      ---------           <---------DEAR3(1)    --------->ARR11(3)                                    <---------ARR14(2)           <---------RAP2.3(3)   <---------GLK1(2)                        <---------ALFIN1<----------      <---------ANAC46 <------NtERF2  <---------LBD16            <------ZmHOX2a(1)     --------->ARR14(2) ---------CCA1(2)<-------MYC3    <---------ARR11(3)        --------->ALFIN1     <---------ALFIN1-----   ccatctcttcgtggaggcgcgtggcgtctttgtgagattttccggggattgatggtgagaagtggaaggattgtccccatccccactcgtatatgtcggt  7039800                                            --------->ARR14(2)                                            <---------ARR14(2)                                           <-------GAMYB     ----------->GT1                      <---------MYB46(3) --------bZIP60(1)                        <---------DEAR3(2)      <------NtERF2 ------->bZIP60(1)                       <---------DEAR3(1)    <---------LBD16 -------->STF1                          <------NtERF2          <------NtERF2 ------>TGA1                          <---------DEAR3(1)      <---------ORA47(2) ---DEAR3(2)                    --------->HSFB2a(1)           <---------RAP2.3(1) --At1g77200                    <---------HSFB2a(1)           <---------ATERF1(1) --DEAR3(1)                     <---------HSFC1(2)           <---------RAP2.3(2) --DREB2C(2)                    --------->HSFC1(2)           <---------DEAR3(1) --DEAR4(1)                --------->HSFB2a(2)               <---------RAP2.6(2) >DDF1                     <---------HSFB2a(2)              --------->SPL7 -RAV1(1)        <---------ETT(2)    <---------LBD16        <---------ORA47(1)    <---------ZAT6 ------>HVH21    --------->ETT(2)<----------DOF2      <----------DOF2 ---------->DOF2          <-----   gacgagattgtagaatgtgtcgacgaagtctggaactttctcggcggtttcgatttcttttggacggcggaagaaagaccagtactgtttgtagttgtct  7039900                                     --------->ANAC46                                  ------>ZmHOX2a(2)                                 --------->CCA1(2)                                                  -                                 <------ZmHOX2a(2)                                                  <                                --------->ARR11(3)                                                  -                                --------->ARR14(2)                                                 <-                                <---------ARR11(3)                                                ---                                <---------ARR14(2)                                                <--            <------NtERF2       --------->AGP1                           --------->ANAC58      ------          <---------ANAC46      >>>>>>>>>GATA-1             --------->ZAT2                   --------          <---------DEAR3(1)    >>>>>>>>>GATA-4             <---------ZAT2   --------->At4g35610  <--         <---------LBD16        >>>>>>>>>GATA-2             ----------->RAV1(2)             ---------         <------NtERF2 ------>NtERF2<---------LBD16         <---------At4g35610  <---------ARR14(2)--       <---------DEAR3(1)       >>>>>>>>>GATA-3             --------->At4g35610  --------->ARR14(2)--      <---------LBD16  ----------->RAV1(1)                 <-----------RAV1(1)  <------ZmHOX2a(1)<---  <----------DOF2    --------->MYB46(3)           <----------DOF2        --------->ANAC58 --------->ARR14(2) ----ANAC46--------->LBD16     --------->GLK1(1) <----------DOF2<---------WRKY18(1)       <---------ARR14(2)   tggactttctcggcggagattgagccaccagagagatctacggctcgtttgcctttacgctctgctggaccgagaacgcagaggaaccagtagataccga  7040000        --------->ZAT18        <---------ZAT18        --------->ZAT14        <---------ABI4(2)        <---------ZAT14   <---------TGA1a   =====================================bZIP_DOF   <---------O2   --------->TGA1a   --------->O2  <------NtERF2 ------>NtERF2 ---------->HVH21 ---------DEAR3(1) -------->DEAR3(1) -----NtERF2 --->NtERF2 -------ATERF1(1) --->MYB52(1) ->DEAR3(2) -------RAP2.3(1) >MYB52(1)   --------->LBD16        ----------------->AGL1 ------->RAP2.3(1)           ---------->DOF2 ------->ATERF1(1)       ----------->GT1                <------ZmHOX2a(1)                       <---- ------DEAR3(1)          <---------ZAT6      <---------MYB52(1)                              <-------   cggcgacgagtgcaccggtgaagaagagtgttaaagagtccattttcgttaagagtgaggaagaccaagagagagagagagagagttttaagtctctttt  7040100      <---------ANAC58      <---------ANAC58                                                --------->AHL20(2)            <      <---------AtLEC2                              --------->GLK1(2) <---------AHL20(2)            -  <----------DOF2     --------->DAG2               <---------GLK1(2) --------->AHL20(2)          ---- -------GT1          ---------->DOF2    <---------AHL20(2)           <---------AHL20(2)        ------ ---DOF2       <---------YAB1 ---------->DOF2    *TSS                --------->YAB1          <-------   acttctttgcctgatttatgacaaaaagtttttaaagagtttttaatctgagagaatctatatttgactaattaaaatcccagttcaaaaactgactttt  7040200                                                    ----------->GT1                                        --------------->AGL15                                       ----------------->AGL3                                       <-----------------AGL2      <---------AHL20(2)               ----------------->AGL1      <---------ICU4                   ----------------->AGL2     <---------YAB1                    ==========================================================MADS_MADS   --------->YAB1                      ----------------->AG  --------->ICU4                       <-----------------AG  <---------YAB1                     --------->ANAC58                                   <---------TOE1(3) ---------ICU4                       --------->ANAC46  --------->AHL20(2)               <---------TOE2(3) -------->YAB1                       --------->ANAC58  <---------AHL20(2)          <----------DOF2 ----->YAB1                ----------->GT1    <---------TOE2(3)                  --------------->AGL15 --->AHL20(2)         --------->AHL20(2)<---------------AGL15                    <---------------AGL15 ---DOF2          ---------->DOF2<-----------GT1<------ZmHOX2a(1)    <---------TOE2(3)---------->DOF2   aataataataaatgcctagacaaagtaaatggaaattacaagccaaataaggaatattaaaaaaacattttaagtttttgtttctctttaaaggttttgc  7040300                      <---------GLK1(2)                     --------->YAB1                     <--------ATHB1                    --------->ICU4                    <---------YAB1               --------->YAB1           --------->AHL20(1)           --------->AHL20(2)                     <---------ANAC58                                  -           <---------AHL20(2)                    <---------TOE2(3)                                ---          --------->AHL20(2)                    <-----------GT1                                   ---       --------->AHL20(2)                <---------AHL20(2)                                       ---       <---------AHL20(2)                --------->AHL20(2)                     ----------->GT1   ---      <---------AHL20(2)                <---------AHL20(2)                   <----------DOF2    -----      --------->AHL20(2)             --------->AHL20(2)               <---------ANAC58          <---- --------->AHL20(2) <---------ATHB12<---------YAB1<---------ANAC58    <---------ANAC58  <-----------HVH21   aaattgaataaaattaattacaatgattcttccatttgattatttattttttacgttgccaattggaattttgcttcttcttttgttaaatgtcatgacc  7040400                                                                          <---------YAB1                                                                        -------->HAHB4                                                                        <---------ICU4                                                                     <---------ICU4       --------->YAB1                                                --------->YAB1      ----------->GT1                                               <---------ATHB51 -------->ZAT6                                   <---------------AGL15  --------->YAB1 ------>MYB52(1)                    <---------CCA1(1)               --------->AHL20(2)        ------- --->MYB46(1)                       <---------RVE1(1)               --------->ICU4          <-------- -------->RAV1(1)                  --------->ARR11(3)               <---------AHL20(2)      <-------- --->MYB83               <---------ICU4          --------------->AGL15 --------->ICU4    <---------GLK1(2) ---->MYB46(3)          --------->ICU4         ----------->GT1     --------->AHL20(2)    <---------ARR14(2) -----MYB59       --------->AtLEC2 <---------ARR11(3)              <---------AHL20(1)    --------->ARR14(2)   caacagtaatgaaaatagccatggaaatttttacagagatatttgtaaatgctaaattttgtaattcaaaataattatgagaagagagccagatttgttg  7040500                                                        <---------AtLEC2                  --------->WRKY18(1)            --------->AHL20(2)                <------MYB83                    <---------AHL20(2)    <---------AHL20(2)       --------->AHL20(2)----------->GT1        --------->AHL20(2)    --------->ATHB12 --->ID1        <------MYB46(1)            ----------->GT1   ---------->DOF2    <-----------GT1 <---- ---RAV1(1)    --------->MYB59   >>>>>>>>>RAP2.2--------->ICU4   --------->ARR11(3)          <------- -MYB46(3) <---------AHL20(2) <---------CCA1(2) <---------ATHB51 <---------ARR11(3)   --------->YAB1   ctcttggacttaaatatttggtcaaacaagttatatctaaacgtttggaaataattttgcattaaaagacatttattggaattttcaatactaatctttt  7040600  Previous    Next  AGI:  At1g20330.1    Description:  SMT2 (STEROL METHYLTRANSFERASE 2). Identical to 24-methylenesterol C-methyltransferase 2 (SMT2) [Arabidopsis Thaliana] (GB:Q39227;GB:Q8H155;GB:Q8L7L3;GB:Q8LCB0;GB:Q9LN25); similar to SMT3 (S-adenosyl-methionine-sterol-C-methyltransferase 3), S-adenosylmethionine-dependent methyltransferase [Arabidopsis thaliana] (TAIR:AT1G76090.1); similar to 24-sterol C-methyltransferase [Gossypium hirsutum] (GB:ABY49843.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61975.1); similar to unknown [Populus trichocarpa] (GB:ABK94689.1); contains InterPro domain Sterol methyltransferase C-terminal (InterPro:IPR013705); contains InterPro domain M Range:  from: 7038678    to: 7040149    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version