Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          --------->LBD16                                                                                       <---------HSFB2a(2)                                                                                <---------AHL20(2) ------->ZAT14                                                           <---------AHL20(2)         < --------ZAT18                                                 <---------AHL20(2)      --------->HSFB2a(2) --------ZAT14                                                 --------->AHL20(2) <---------ICU4  --- ------->ZAT18                                           ----------->GT1<---------AHL20(2)        --- ---ZAT14                 ------>ZmHOX2a(1)            --------->DAG2   --------->AHL20(1)     <----- -->ZAT14  ------>ZmHOX2a(1)                          ---------->DOF2   --------->AHL20(2)    -------   gtccactggtctcctctcttcccaagtccttcacttctgaattcgatacacaaacaaaaaggaaattaaacaaatttaatataaaaattccagagagatc  7022700             --------->At4g35610          ---------->DOF2      <---------At4g35610                 <-------TEIL       --------->AtLEC2        <---------ZAT2                    --------->ARR14(2)    <-------TEIL               --------->At4g35610               <---------ARR14(2) ---------ARR11(3)             --------->ZAT2                   <------ZmHOX2a(1) ------>ANAC58                 <------NtERF2               <------ZmHOX2a(1) ------>ANAC58                <<<<<<<<<AtERF-3      ===================HOX2a_HOX2a -ZmHOX2a(2) <---------At4g35610                    <------ZmHOX2a(2)                  ----------->GT1 -->ARR11(3)<-----------ARR10 <<<<<<<<<AtERF-4      ==============HOX2a_HOX2a      <------ZmHOX2a(1)-   aagaaattcatgcaaagctcacctctcagtggcagctcgtcggaaataagagagatcgataggagaggattcatcgttgttaataggaagagagaaaact  7022800                                 --------->TOE2(3)                                --------->YAB1                              <---------DOF5.7(2)                            --------->DOF5.7(2)                             ------>ZmHOX2a(1)                           --------->TOE2(3)                            --------->ARR14(2)       ---------->DOF2     --------->TOE1(3)                            <---------ARR14(2)  --------->ANAC58        --------->YAB1                         --------->ETT(2)  --------->ANAC58       <---------ATHB12 --------->TOE2(3)      <---------ETT(2) --------->DOF2      <---------KAN4(2) ----------->RAV1(1)      --------->DDF1   ccgaaagccaaaagcattaagagaacaatcgttaacataaacaacataaacagaaccagcatcaatgtcgaccatttcctcgcttgaaatcgcgagtgtc  7022900                             --------->ARR11(3)                         --------->LBD16                         --------->ANAC46                       --------->ANAC46                     <---------ALFIN1      ------->GAMYB                    --------->MYB46(3)    <----------ID1                  <---------ARR11(3)    --------->MYB52(1)                  <---------ARR14(2) --------->ANAC58                  --------->ARR11(3) --------->ANAC46                  --------->ARR14(2) --------->ANAC58                         ---------->DOF2                  --------->AGP1<---------------AtSPL8                 --------->ARR14(2)              ---------->DOF2<---------ARR11(3)                        --------->GLK1(2) <---------ARR14(2)<------ZmHOX2a(2)--------->ZAT18                    <---------ARR14(2) --------->ARR14(2)--------->CCA1(2)<---------ZAT18                   <---------GLK1(2)     <-------TEIL   tcagtttcgccatcaacaaagatccacccgagatgttgtacacaacgacaaatagaactcgatcgaatcagagaatcccaaaaacccctcgagatgcaga  7023000                                                          <---------ARR14(2)                                                         <------ZmHOX2a(1)                                                         *TSS <----------DOF2                                                       <---------TOE2(3)           --------->GLK1(1)                ---------->ID1--------->ARR14(2)             --------->ZAT14          <---------ARR11(3)               <-----------GT1<---------GLK1(2)    <----------DOF2          --------->ARR11(3)     <---------YAB1       --------->YAB1           --------->TOE2(3)    ---------->DOF2            --------->YAB1         <---------ICU4    <----------DOF2  <---------ZAT14   aactaataaagagatatcaaatttctatttcactcataaatgatttttccttctaataaggattctttctctgtcttttttctttaatctctgttctgtt  7023100                                                                       <-------GAMYB                                                                      <---------MYB46(3)                                                                     --------->ALFIN1                                                                     <---------AtMYB61                                                                    <---------MYB52(1)                                                                    <-------GAMYB                                                                   <------MYB46(1)                                                                   <------MYB83                                                                   <---------DEAR3(2)                                                                  --------->MYB46(2)                                                                  <---------MYB46(3)                                                                  <---------DEAR3(1)                                                                  <---------DREB2C(2)                                                                  <---------DEAR4(1)                                                                  --------->MYB55(2)                                               --------->ALFIN1   --------->MYB111(2)                                             <---------REM1(1)    --------->MYB111(1)                                     <---------ANAC46          ------------>AtMYB84                                     --------->ANAC55(2)       ------------>AtMYB15                                     <---------ANAC58          --------->MYB55(2)                                     <---------ANAC58          <---------MYB46(3)                                     <---------ANAC55(2)      <---------AtMYB61                     <                                     <---------ANAC55(1)      --------->ALFIN1                      -                          ------->TEIL    --------->ICU4  <---------At5g28300                       <        <---------At4g35610        <-----------GT1       <-----------GT1                            -        --------->At4g35610   <---------MYB52(1)     <---------RVE1(1)--------->MYB55(2)      <------       ------->TEIL   --------------->AtSPL8 <---------bZIP60(2) <---------ORA47(1)     --------->ATHB12   ctaacgctgcatctgtaaatgacatttgtacccttatttacgtgatgatgtggcgatatttacggtggtcggtggttgagaaaatagggatgatttcgtc  7023200                                                                          <---------YAB1    <-----------RAV1(1)                                       --------->MYB46(3)   <---------YAB1                                            -------->P<----------DOF2 ---------AHL20(2)                                           <<<<<<<<<<<<<<<<<LFY -------->AHL20(1)                                          --------->WOX13(1) ---------AHL20(1)                                       --------->ARR11(3) -------->AHL20(2)            --------->YAB1             <---------ARR11(3) -----TGA1                 ------>ZmHOX2a(1)<---------ICU4<------ZmHOX2a(2)                  --------   attttattgttgggaattggttttgtttcctagcacaatgttttagttattacacatgagatcaaccaatgggcttattgttgattactacatttccata  7023300                                                                                          --------->At4g35610                                                                                    --------->ICU4                --------->WRKY45                                                    <---------YAB1              <----------DOF2                    <---------HSFB2a(2)              <---------ICU4       <---------ZAT6                            --------->HSFB2a(2)             --------->ICU4   --------->ZAT14                         ----------->GT1             --------->YAB1     <---------At4g35610   <---------ZAT14     ---------->DOF2---------->DOF2               --------->YAB1<--------HAHB4 ->TOE2(3)  <---------YAB1        --------->At4g35610              <---------YAB1<---------YAB1   aaaactatagtgtcatctttgactataaggcccattagccgaaagtggtttctagtagcacattgtgctataatagtaagagcattattattagctgtct  7023400                                                                               --------->YAB1                            --------->ATHB12                                  --------->ICU4                            <---------ICU4                                    <---------YAB1                       <---------AHL20(2)                                   --------->YAB1                       <---------YAB1                                       <---------ICU4                  <---------AHL20(2)                                       <---------ATHB12                <---------CCA1(1)                                          <---------ATHB51                <---------RVE1(1)                                          --------->ICU4               <---------GLK1(2)                                      --------->ANAC46               --------->ARR11(3)                                     --------->ANAC58               <---------ARR11(3)                                     --------->ANAC58  <----------ID1             <---------TOE2(3)           <---------ARR11(3)       --------->CCA1(2) <----------DOF2             <---------TOE1(3)           --------->ARR11(3)      <----------ID1-------->HAHB4   cttagattagtttttaagatttttttttattgattactaagaacatcttattctatctcttatataagagacaagcaataatgatgctttaagacaaatg  7023500                                                                                               <-----                                                                                               xxxxxx                                                                                           xxxxxxxxxx                                                                                         <----------DOF2                                                                                         <---------DAG2                                                                                         xxxxxxxxxxxx                                                                                        xxxxxxxxxxxxx                                                                                        xxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  <---------ANAC58                                                                                  <---------ANAC55(1)                                 --------->LBD16                                  <---------ANAC58 xx                                --------->HSFB2a(2)                               --------->ANAC55(2)                                --------->LBD16                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                ----------->GT1                   --------->DAG2  <---------ANAC55(2)                                <---------HSFB2a(2)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                               <---------HSFB2a(2)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                               <---------LBD16      --------->ANAC58         <---------AHL20(2)<-----                               <---------ANAC46     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxx                              <---------LBD16       --------->ANAC58        --------->AHL20(2) <-----                        <------------CBF            --------->ANAC46       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    ----------------->AG   <---------ANAC58      ---------->DOF2  <---------ANAC46xxx                    ----------------->AGL1 <---------ANAC46    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xx  <---------ANAC46 <-----------------AGL1  <---------ANAC58  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)xxxx   gaagacgtagagtttcaacgtttccaaattggtccgggaaaaatgtcgttttatacgcaaactttcaaaaagtgaccatttaatacgtgaactttttgtg  7023600  Previous    Next  AGI:  At1g20270.1    Description:  oxidoreductase, 2OG-Fe(II) oxygenase family protein. similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT2G17720.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61966.1); contains InterPro domain Prolyl 4-hydroxylase, alpha subunit; (InterPro:IPR006620); contains InterPro domain 2OG-Fe(II) oxygenase (InterPro:IPR005123) Range:  from: 7020739    to: 7023057    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version