Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          ---------->DOF2                    <------ZmHOX2a(2)                    --------->CCA1(2)                   <---------ARR11(3)                                              --------->TOE2(3)                   <---------ARR14(2)            --------->YAB1                 ----------->RAV1(1)                   --------->AGP1               <---------ATHB51          --------->CCA1(2)           --------->ZAT2                  --------->ANAC58              --------->ARR14(2)           <---------ZAT2                  --------->ANAC58              --------->ARR11(3) ---------           --------->At4g35610             --------->ANAC46          <-----------------AGL1 ---------   <---------YAB1  --------->ARR14(2) --------->YAB1                ----------->RAV1(1)     ---------  <-----------HVH21--------->ARR11(3) <---------ICU4<---------AHL20(2)   --------->ARR11(1) <-------- ----TEIL  <---------At4g35610  <---------At4g35610 --------->AHL20(2)   <---------ARR14(2) <--------   gcattgtcatggaagctgcaagatccaaaagctaagctcatcatcacacaataataaaacaatttgcatacaacagatatggcaacataaacaaaatctg  7008900                                                --------->AtLEC2                                                --------->ANAC58 <----------DOF2                                --------->ANAC58                  --------->MYB46(3) >ARR14(2)                                    <---------ANAC58      <---------ANAC58 >ARR11(3)                                    <---------ANAC58      <---------ANAC55(2) >GLK1(2)                                <---------ICU4             <---------ANAC58         <------- -ARR11(3)                              <-------TEIL                <---------ANAC46         -------- -ARR14(2)                  <---------ICU4    <---------ANAC46     <-----------------------TaNAC69(2)   ctactttctcaaactacttatcaattgaaatcactacaaatattcatggcatgcatagatttagacaattacttgaaacatcgaacaactaatttctcaa  7009000                                                                                                 <---                                                                                           <-------TEIL                                                     --------->At5g28300                  <------ZmHOX2a(2)                                                    ------->GAMYB                        --------->ARR14(2)                                                  >>>>>>>>>>AtWER                        --------->AGP1        --------->ARR11(3)                       --------->MYB52(1)                      <---------ARR14(2)    ---------->DOF2                            <---------MYB52(2)<---------ANAC46        <---------ARR11(3) --------AGL15                               --------->ZAT6      --------->At4g35610     --------->ARR11(3) ------->AGL15                        --------->GLK1(1)---------->DOF2                  --------->GLK1(1)   tctagctaaagaaattgaaaactgaaattgaagggaagagaaatcaaacactaacggtaaaggaatgaggtgaagaacaagagcaacgcgagatccatag  7009100                     ------>NtERF2                   --------->At4g35610                                               --------->LBD16                   --------->ATERF1(1)                                              --------->LBD16                  <---------RAP2.3(1)                         --------->ANAC58     <---------LBD16                  <---------ATERF1(1)                         --------->ANAC58  --------->ARR14(2)                  <<<<<<<<<AtERF-4                            --------->ANAC46  <---------ARR14(2)                 <---------RAP2.6(2)               --------->LBD16      --------->ANAC55(2)         <                 <---------RAP2.3(2)            --------->MYB52(1)      <---------ANAC55(2)     <----                <---------At4g35610       --------->LBD16   <-----------GT1    <---------CCA1(2)-----  --------->WOX13(1)<---------ARR14(2)  <---------LBD16    --------->ARR14(2)<---------ANAC58 <------ ------ZAT6 <----------DOF2           <---------ARR14(2)   <---------ARR14(2)<---------ANAC58<-------   tgatcaatcgctagctttagcggctcccaagcgtctctacaatccggacaaaccgggtcaatatacgcctcgataagtatcgtatcccggtcgattttcc  7009200                                 <------NtERF2       <---------ARR14(2)       --------->LBD16       --------->ARR14(2)      --------->DEAR3(1)                                     ---------->DOF2     <---------MYB46(3)       <---------LBD16        --------->SPL7                   --------->MYB52(1)   <---------MYB52(1)  --------->ANAC58   --------->At4g35610                       <---------MYB52(2)  --------->LBD16      --------->ANAC58   <---------At4g35610                     --------->ZAT6 ---------LBD16        --------->ANAC46   --------->ZAT2                       ------->GAMYB -----ETT(1)         <---------ALFIN1     <---------ZAT2  --------->HSFB2a(1) <---------MYB52(2)    < ------>HVH21      <-----------HVH21      ----------->RAV1(2)                 --------->MYB46(3)    - -----GT1         --------->WOX13(1)    <-----------RAV1(2)                 --------->MYB52(1)     <- ----GT1--------->CCA1(2)   <---------DEAR3(1)   <----------DOF2 <---------------------WRI1 <--------   gacccggtggatacaaaaatccatcacgcctcgccggaggtatcagctgcgcttgtacgactgttccgacgaagaagacaacgaacactaacgccgttcg  7009300                                                                                                -----                                                                                       --------->HSFC1(1)                                                                                       --------->HSFB2a(2)   <---------ICU4                                                                      <---------HSFC1(1)  <---------YAB1        --------->AHL20(2)                                             <---------HSFB2a(2) ---------ICU4          --------->YAB1                                             --------->GLK1(1) -------->YAB1          *TSS                           <---------LBD16             <---------GLK1(1) --------ATHB12        <---------ATHB12          <---------YAB1                   <---------ARR11(3) -SPL7               --------->WOX13(1)      <---------GLK1(2) ----------->GT1    --------->ARR11(3)   aatcatcatcgctctctctgtatcaatcaaattttcttaagaaaacagattataaaactcggagaaggtagaatcaacgtccaagatttctcgaagacat  7009400                                                                           --------->O2                                                                           <---------ANAC58                                                                           <---------TGA1a   --------                                                                           <---------O2      <-------                                                                           <---------bZIP60(2)  <----                                                                           --------->TGA1a   <-------                                                                           <---------ANAC58  <-------                                                                           <---------ANAC46  ========                                                                           <---------ANAC55(1)-------                                                                          ----------->STF1   --------                      --------->ZAT2                             <------------CBF --------->KAN4(1)                      <---------At4g35610                      <---------------AGL15         --------                      --------->At4g35610                      <---------YAB1     <---------KAN4(1)         <---------YAB1                                <---------MYB52(1)<---------TGA2(2)   <-------         <---------TOE2(3)                           <---------MYB46(3) ----------->TGA1    <--------   --------->MYB46(3)--------->GLK1(2)             <---------At4g35610  ----------->HVH21<-----------HVH21 --------->MYB52(1)<---------At4g35610     --------->REM1(1)  <-----------------AGL2--------->GLK1(2) ---->ICU4 <------------CBF              ------>ZmHOX2a(1) <---------GLK1(1)     <---------KAN4(2)<--   aatcaacgactaagattgctcagaagctgagtgagacccagtccttcatcttcagccgttgatttctgattgtggtgacgtggaataatctggtcacgta  7009500                                       --------->AHL20(1)                               ----------->GT1 ----------->GT1               >>>>>>>>>>E2Fc ->ANAC55(2)                   >>>>>>>>>>E2Fd --ANAC55(2)                   >>>>>>>>>>E2Fa -----TOE2(2)                  >>>>>>>>>>E2Fe                                                  ====== --ANAC46                ---------->DOF2                                                       ------ --O2                <---------TOE1(3) <---------AHL20(2)                                     ------- ===================================bZIP_DOF          ------------>CBF                    --------->KAN4(2) -->TOE1(2)     --------->YAB1----------->GT1        --------->ANAC58                    <---------HSFB2a(1) ->O2--------->YAB1  <---------TOE2(3) <---------AHL20(1)                                --------->HSFC1(2) ->TGA1a        --------->ATHB12       --------->AHL20(2)                            ----------->GT1 --TGA1a      <---------WOX13(1)      --------->AHL20(2)   --------->YAB1      ----------->HVH21   <- ---------------TaNAC69(2)  <---------LBD16 <---------AHL20(2)        <---------ARR11(3) --------->HSFB2a(1) ----ZmHOX2a(1)--------->ICU4 --------->LBD16        --------->ANAC58 --------->ARR11(3) <---------HSFC1(2)   ggaagattaataagtgaatgattaaggttaagcgggaaaattttattttttagttaagcaatgacaaaacaagttcttccactgatagagaaaattcctc  7009600                                                                                            <--------                   --------->ARR14(2)                                                       <--------          <---------GLK1(2)                                                                 ---------       <---------TOE1(2)        --------->ATHB12                                            ---------     <-------GAMYB --------->ARR11(3)                                                    --------->LBD16    --------->MYB52(2)         <---------YAB1                                          <---------LBD16    ------>ZmHOX2a(2)--------->YAB1                                                  <---------ARR14(2)    <---------MYB46(3)       <---------CCA1(2)                               <---------ARR14(2) ==========HOX2a_HOX2a     --------->YAB1                       --------->ANAC58     --------->ARR14(2) >ZmHOX2a(1)       --------->GLK1(2)                            --------->ANAC58--------->ANAC46 -->TOE2(3)        <---------ARR14(2)                     ----------->RAV1(1)--------->ZAT14--------- --------ATHB12   <---------GLK1(2)               <---------HSFB2a(2)        --------->ARR14(2)   aatcgatcgttggattcttagaatcttcatcatatcattggtcttcttcgttgtcgaagacaacacaagctcatgctcgtatactcaaatccggagctca  7009700                                                                                             ------>ZmHOX2a(1)                                                                                            ---------                                                                                           ------>ZmHOX2a(2)                                                                                          <------ZmHOX2a(2)                                                                                         <---------ARR11(3)                                                                                         <---------ARR14(2)                                                                                         --------->ARR14(2)                        --------->ATHB12                                               --------->LBD16                        <---------ICU4                                                <---------HSFB2a(2)                --------->LBD16                                                       --------->HSFB2a(2)                --------->At4g35610                                                   <---------ANAC55(2)                <---------At4g35610                                                   --------->ANAC55(2) -ZAT2    --------->ARR11(3)                                                   <---------ATHB12 -At4g35610    --------->ANAC46               --------->YAB1       ------>ZmHOX2a(2) <---------LBD16< >ZAT2    <---------ARR11(3)               --------->YAB1          =================================HOX2a_HOX2a >GLK1(1)<---------CCA1(2)   <---------ANAC58 --------->ATHB51   --------->ARR11(3)--------->ARR14(2) >At4g35610   <---------LBD16<---------ANAC58<---------YAB1  <---------At4g35610   <---------ARR14(2)   aaacgatggctatatctccgctaaactcattgcttcatactcgaactataattgtttcaacgatgctgatctcgtcttgcaatcgattccggatcctact  7009800  Previous    Next  AGI:  At1g20225.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G76020.1); similar to unknown [Solanum tuberosum] (GB:ABB55396.1); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336) Range:  from: 7007747    to: 7009324    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g20230.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G23330.1); similar to Os05g0370000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055349.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN63659.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61959.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 7009561    to: 7011843    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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