Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                <------                                                                                             --------                                                                                            -------->P                                                                                            ------>MYB46(1)                                                                                            ------>MYB83                                                                                           <---------ALFIN1                                                                                          <---------SPL7                                                                                       <---------ZAT18                                                                                     --------->LBD16                                                                                    <---------ANAC58                                                                                    <---------ANAC58                                                 ----------->RAV1(2)                --------->ANAC55(2)                                         ---------->ID1                             <---------ANAC55(1)    --------->REM1(1)                 <----------DOF2                               <---------ANAC55(2)   --------->ZAT14               <------ZmHOX2a(2)                                  <---------ANAC46   <---------ZAT14              --------->ARR14(2)                               <---------ARR14(2) --------ICU4                   <---------ARR11(3)                               --------->ARR14(2) ------->ZAT6                   --------->ARR11(3)                          <---------REM1(1)<------- ---ARR10             <---------YAB1 <---------ICU4              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   atcactacaccaattcatagaaccatgaataccagatcatcttttcgcaatacctgaagaagagccatcgcataggtgatgtagttccgtgccctaccca  7007200           --------->GLK1(2)           ------->TEIL              --------->ANAC46           <-----------ARR10      <---------ARR14(2)          <---------GLK1(2)       --------->ARR14(2)        --------->ANAC58         <---------CCA1(2)                                ----------->RAV1(1)        --------->ANAC58        <---------SPL7                                 --------->ANAC58        --------->ANAC55(2)    <---------ANAC46                                --------->ANAC58        <---------ANAC55(2)    <---------ANAC58                              ---------->DOF2      --------->CCA1(2)        <---------ANAC58                         <---------At4g35610 ---------AGL15        <---------At4g35610                              --------->At4g35610 --------->AGL1        --------->At4g35610    <---------GLK1(2) --------->ANAC55(2)           ------- ----------AGL1       --------->ANAC46------>NtERF2             <---------ANAC55(2)         ---------   tactggtgatacgaatctcattctcagcaatcggcgtatccgccttcggcttctcaactctctgatacttatccatctgaaaagcaacacaaaatcagaa  7007300                                    <---------TOE2(3)                       <---------------------WRI1                                                  <-                     --------->TOE2(2)             <<<<<<<<<GATA-4                                <--                     --------->TOE1(2)             <<<<<<<<<GATA-3                                <--   ------>ZmHOX2a(1)--------->MYB46(3)             <<<<<<<<<GATA-2                     ------>ZmHOX2a(1) -->At4g35610     <-----------GT1   <---------TOE1(3)                                 --------->TOE2(3) >YAB1     --------->AHL20(2)    <---------MYB52(2)<<<<<<<<<GATA-1            --------->TOE2(3)   <--   gagtccttctcaaaaaaatgtaaccagcgatggaaactaaggtttctcgttcaatccacgatttagaagaaacagggttttcttaaatcctcagtaaatt  7007400                                    ====================================HOX2a_HOX2a                                    ------>ZmHOX2a(2)                                   <------ZmHOX2a(2)                                   =====================================HOX2a_HOX2a                                  <---------AGP1                                  <---------ARR14(2)                                  --------->AGP1                                 <---------CCA1(2)                                ----------->ARR10                              <--------P                        --------->GLK1(2)                        <---------ARR14(2)                        --------->ARR14(2)                                 <------MYB83                      <---------HSFB2a(1)                              <-----------RAV1(1)                      <---------HSFC1(2)                               ==========================RAV                     ----------->ARR10                                <---------TOE2(3)                     <---------TOE1(3)  --------->ANAC46         <------ZmHOX2a(1)      <---------ANAC58--------->HSFC1(2)--------->HSFB2a(2)      --------->YAB1      <---------ANAC58--------->HSFB2a(1)--------->LBD16        ----------->GT1      <-----------RAV1(2) ---------DOF2       <---------TOE1(2)  <---------HSFB2a(2)    <---------TOE1(3)     <---------HSFB2a(2) -------ANAC58    <---------ANAC58--------->ARR14(2)           <---------TOE2(3)     --------->HSFB2a(2) -------ANAC46    <---------ANAC58--------->ARR11(3)   --------->GLK1(2)   <---------MYB46(3) >>>>>>> -------ANAC58    <---------ANAC46<---------ARR11(3)  <---------ARR14(2)   <------MYB46(1)    >>>>>>>   gcttgaatgcttaccttgttgcgaaggttctggttagatcttccgaaaccctagaagaatcggataaggataaatgttggtttctgcccagaagaaattt  7007500                                                            <-------GAMYB                                                           <---------MYB46(3)                                                          <---------MYB55(1)                  <------                                                          <--------P                         --------                                                         <-------GAMYB <----------DOF2      ---------                                                       <---------RAP2.6(2)                  ---------                                           --------->ANAC46--------->MYB52(2)               ---------                                           --------->ANAC58--------->MYB111(2)              ---------              <---------ANAC58             --------->ANAC58--------->MYB55(2)              ----------              <---------ANAC58           <-----------GT1<---------MYB46(3)                --------->At4g35610 >>SARD1 --------->AHL20(2)          --------->AHL20(2)<---------DEAR3(1)                ------->GAMYB >>CBP60g<---------AHL20(2)      <---------YAB1      ------------>AtMYB77               --------->MYB46(3)   ggacgagagaattaattcttgtctcgtttctgtttctgattttatacgccctaagaggcggttgttgaaggcgcttctctgatatatataacagccgcac  7007600                                --------->ZAT18                             <---------At4g35610                           --------->ZAT18                           <---------ZAT18        --------->HSFB2a(2)<---------ZAT14 ---ALFIN1           ------->TEIL ->LBD16<---------HSFB2a(2)--------->ZAT14 >RAP2.6(2)          ----------->RAV1(1)                <---------TOE2(3)----------->GT1 >RAP2.3(2)       --------->ANAC58               <---------MYB52(1)  <-----------GT1 >DEAR3(1)        --------->AtLEC2         <---------GLK1(1)     --------->TOE2(3) -->RAV1(1)--------->AtMYB61 --------->At4g35610--------->LBD16  <----------DOF2 ----->AtSPL3     --------->ANAC58        *TSS<---------LBD16 <-----------GT1               <------ZmHOX2a(1)   aacttctcttccacaaacccatgcaccagtgaactgccctaatcgatttccggtttttaagtttttactttaaaccggttaaatatcaaatcgaggatta  7007700                <---------CCA1(2)           <------------CBF          --------->ATHB12 <----------DOF2                                          <-----------GT1         <---------YAB1   <------------------------ANAC81                          <---------YAB1        >>>>>>>>>>>>>>>>>LFY     <----------DOF2                             --------->AHL20(2)        <<<<<<<<<<<<<<<<<LFY    <------------------------ANAC81              <---------AHL20(2)       --------->YAB1   <------------------------ANAC81                    <----------DOF2  ------------>CBF  <----------DOF2                               <----------DOF2<---------ICU4 --------->ANAC58<---------ARR11(3)    <----------DOF2 <---------ICU4      --------->TOE2(3)   ------ --------->ANAC58--------->ARR11(3)  ---------->ID1   --------->ICU4--------->AHL20(2)       <-------   gaccagcaataaccattggtatcttttctctttctctttttctttttttttttgtcatcagtataaaacttttaatactttaatttttatcgtttataca  7007800                                                          <-------GAMYB       --------->ANAC58                                   --------->At4g35610       --------->ANAC58                                   <---------At4g35610  ------->TEIL --------->TOE1(2)                        --------->At4g35610        <-----------GT1 --->ANAC46                               <---------At4g35610     ----------->GT1 ----GT1                       <---------YAB1     <---------ATHB12<---------REM1(1)            <-----   aaacatgagaagcatttgaagaatttttggtttattatacattaagctgcaaatgaagacagttgaagatgtaacaatatgaacatgtatgagagttatg  7007900                                                                          <------ZmHOX2a(1)                              --------->MYB59                       <---------ANAC58                            --------->ALFIN1                        --------->ANAC55(2)                   --------->MYB111(2)                              <---------ANAC58         <-------                   --------->MYB46(2)        ----------->GT1        <---------ANAC55(2)    <---------ANAC46      <----------DOF2 --------->ALFIN1      --------------->AtSPL8  <---------ANAC55(1) --------->ALFIN1 --------->HSFB2a(2)<------MYB83            <---------------AtSPL8  <---------ANAC46  <------MYB83 <---------HSFB2a(2)<------MYB46(1)--------->bZIP60(2)          <-------GAMYB  ---------->DOF2  <---- ----YAB1          --------->MYB111(1)     ---------->DOF2     <---------MYB46(3)     <------MYB46(1)   cttctggacttttcaactaagtaggtgggagtttggcacatcatagaaagtacaaactagtaagatggttgcgtgaggaatgaaaggaaggtgtctcgta  7008000                                                                                    <---------ARR14(2)                                                                                    --------->ARR14(2)                                                                              --------->ZAT2                                                                              <------NtERF2                                                      --------->ATHB12        --------->At4g35610                                                    <---------ARR11(3)        <---------ZAT2                                                    --------->GLK1(2)         <---------At4g35610                          ===========================HOX2a_HOX2a          --------->ANAC46                          <------ZmHOX2a(2)     --------->YAB1          <-----------RAV1(2) --ANAC46               <------ZmHOX2a(1)     ------>ZmHOX2a(1)       ----------->RAV1(1)           < -----TOE1(2)   <-----------GT1              --------->TOE2(3)      --------->At4g35610      --------   tgtctacttcttgtggtttaaccagaggatcaatggtgtctctccatccttcataatctttgggagaaccagcaccaggcagctcgaatccattcacgta  7008100  Previous    Next  AGI:  At1g20220.1    Description:  nucleic acid binding. similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G76010.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73522.1); contains InterPro domain Alba, DNA/RNA-binding protein; (InterPro:IPR002775) Range:  from: 7004870    to: 7007642    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g20225.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G76020.1); similar to unknown [Solanum tuberosum] (GB:ABB55396.1); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336) Range:  from: 7007747    to: 7009324    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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